Speer6-ps1 (spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1) - Rat Genome Database

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Gene: Speer6-ps1 (spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1) Mus musculus
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Symbol: Speer6-ps1
Name: spermatogenesis associated glutamate (E)-rich protein 6, pseudogene 1
RGD ID: 1620748
MGI Page MGI
Description: ASSOCIATED WITH abdomen swellings; abnormal acetaminophen metabolism; abnormal aerobic respiration; INTERACTS WITH 1,2-dichloroethane; Benoxacor; trimellitic anhydride
Type: pseudo (Ensembl: lncRNA)
RefSeq Status: PROVISIONAL
Previously known as: 1700039A02Rik; Alb-cre; Alb; AlbCre; albumin-cre; cr; SPEE; SPEER-6; Tg(Alb-cre)21Mgn
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39133,199,475 - 3,239,678 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl133,236,206 - 3,239,317 (+)EnsemblGRCm39 Ensembl
GRCm39 Ensembl133,199,425 - 3,242,491 (+)EnsemblGRCm39 Ensembl
GRCm38133,149,475 - 3,189,678 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl133,149,475 - 3,189,678 (+)EnsemblGRCm38mm10GRCm38
MGSCv37133,148,721 - 3,188,924 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36133,148,721 - 3,188,924 (+)NCBIMGSCv36mm8
Celera133,135,860 - 3,175,371 (+)NCBICelera
Cytogenetic Map13A1NCBI
cM Map131.78NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abdomen swellings  (IAGP)
abnormal acetaminophen metabolism  (IAGP)
abnormal aerobic respiration  (IAGP)
abnormal amino acid metabolism  (IAGP)
abnormal apolipoprotein level  (IAGP)
abnormal autophagosome formation  (IAGP)
abnormal autophagy  (IAGP)
abnormal B cell differentiation  (IAGP)
abnormal bile canaliculus morphology  (IAGP)
abnormal bile composition  (IAGP)
abnormal bile duct development  (IAGP)
abnormal bile duct epithelium morphology  (IAGP)
abnormal bile duct morphology  (IAGP)
abnormal bile duct physiology  (IAGP)
abnormal bile salt homeostasis  (IAGP)
abnormal bile salt level  (IAGP)
abnormal bile secretion  (IAGP)
abnormal blood coagulation  (IAGP)
abnormal blood homeostasis  (IAGP)
abnormal blood vessel morphology  (IAGP)
abnormal carbohydrate metabolism  (IAGP)
abnormal cell differentiation  (IAGP)
abnormal cell migration  (IAGP)
abnormal cell morphology  (IAGP)
abnormal cell physiology  (IAGP)
abnormal cellular cholesterol metabolism  (IAGP)
abnormal cellular replicative senescence  (IAGP)
abnormal cellular respiration  (IAGP)
abnormal cholangiocyte morphology  (IAGP)
abnormal cholesterol homeostasis  (IAGP)
abnormal circulating alanine transaminase level  (IAGP)
abnormal circulating amino acid level  (IAGP)
abnormal circulating apolipoprotein level  (IAGP)
abnormal circulating cholesterol level  (IAGP)
abnormal circulating enzyme level  (IAGP)
abnormal circulating ketone body level  (IAGP)
abnormal circulating phospholipid level  (IAGP)
abnormal circulating serum albumin level  (IAGP)
abnormal DNA replication  (IAGP)
abnormal eating behavior  (IAGP)
abnormal endocytosis  (IAGP)
abnormal endoplasmic reticulum morphology  (IAGP)
abnormal energy homeostasis  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal enzyme/coenzyme level  (IAGP)
abnormal fat pad morphology  (IAGP)
abnormal fatty acid beta-oxidation  (IAGP)
abnormal fatty acid oxidation  (IAGP)
abnormal fatty acids level  (IAGP)
abnormal fear-related response  (IAGP)
abnormal feces composition  (IAGP)
abnormal feces lipid level  (IAGP)
abnormal gait  (IAGP)
abnormal gluconeogenesis  (IAGP)
abnormal glucose homeostasis  (IAGP)
abnormal glucose tolerance  (IAGP)
abnormal glycogen homeostasis  (IAGP)
abnormal heart echocardiography feature  (IAGP)
abnormal hepatic cord morphology  (IAGP)
abnormal hepatic duct morphology  (IAGP)
abnormal hepatobiliary system development  (IAGP)
abnormal hepatobiliary system physiology  (IAGP)
abnormal hepatoblast differentiation  (IAGP)
abnormal hepatocyte mitochondrial morphology  (IAGP)
abnormal hepatocyte morphology  (IAGP)
abnormal hepatocyte physiology  (IAGP)
abnormal homeostasis  (IAGP)
abnormal inflammatory response  (IAGP)
abnormal insulin clearance  (IAGP)
abnormal insulin secretion  (IAGP)
abnormal intestinal cholesterol absorption  (IAGP)
abnormal intrahepatic bile duct morphology  (IAGP)
abnormal iron homeostasis  (IAGP)
abnormal Ito cell morphology  (IAGP)
abnormal kidney development  (IAGP)
abnormal lipid homeostasis  (IAGP)
abnormal lipid level  (IAGP)
abnormal lipid oxidation  (IAGP)
abnormal liver development  (IAGP)
abnormal liver lobule morphology  (IAGP)
abnormal liver morphology  (IAGP)
abnormal liver parenchyma morphology  (IAGP)
abnormal liver physiology  (IAGP)
abnormal liver regeneration  (IAGP)
abnormal liver sinusoid morphology  (IAGP)
abnormal lysosome morphology  (IAGP)
abnormal macrophage morphology  (IAGP)
abnormal metabolism  (IAGP)
abnormal mitochondrial ATP synthesis coupled electron transport  (IAGP)
abnormal mitochondrial crista morphology  (IAGP)
abnormal mitochondrial inner membrane morphology  (IAGP)
abnormal mitochondrial morphology  (IAGP)
abnormal mitochondrial physiology  (IAGP)
abnormal mitochondrial shape  (IAGP)
abnormal mitophagy  (IAGP)
abnormal mitosis  (IAGP)
abnormal NK T cell physiology  (IAGP)
abnormal nucleotide metabolism  (IAGP)
abnormal oval cell morphology  (IAGP)
abnormal oval cell physiology  (IAGP)
abnormal oxidative phosphorylation  (IAGP)
abnormal pancreatic beta cell physiology  (IAGP)
abnormal phospholipid level  (IAGP)
abnormal physiological response to hypoxia  (IAGP)
abnormal phytosterol level  (IAGP)
abnormal portal lobule morphology  (IAGP)
abnormal portal triad morphology  (IAGP)
abnormal postnatal growth  (IAGP)
abnormal redox activity  (IAGP)
abnormal respiratory electron transport chain  (IAGP)
abnormal response to injury  (IAGP)
abnormal selenium level  (IAGP)
abnormal snout skin morphology  (IAGP)
abnormal spine curvature  (IAGP)
abnormal sterol level  (IAGP)
abnormal susceptibility to injury induced morbidity/mortality  (IAGP)
abnormal thrombosis  (IAGP)
abnormal thymus development  (IAGP)
abnormal tricarboxylic acid cycle  (IAGP)
abnormal triglyceride level  (IAGP)
abnormal urine homeostasis  (IAGP)
abnormal vasodilation  (IAGP)
abnormal xenobiotic pharmacokinetics  (IAGP)
anemia  (IAGP)
aneuploidy  (IAGP)
bile duct hyperplasia  (IAGP)
bile duct inflammation  (IAGP)
bile duct proliferation  (IAGP)
cachexia  (IAGP)
calcified skin  (IAGP)
calcinosis  (IAGP)
cardiac fibrosis  (IAGP)
cholestasis  (IAGP)
dark liver  (IAGP)
decreased acute inflammation  (IAGP)
decreased B cell number  (IAGP)
decreased basal metabolism  (IAGP)
decreased bile salt level  (IAGP)
decreased blood urea nitrogen level  (IAGP)
decreased body fat mass  (IAGP)
decreased body length  (IAGP)
decreased body size  (IAGP)
decreased body weight  (IAGP)
decreased bone mineral density  (IAGP)
decreased brown adipose tissue amount  (IAGP)
decreased brown fat cell lipid droplet size  (IAGP)
decreased cardiac muscle cell glucose uptake  (IAGP)
decreased cholesterol efflux  (IAGP)
decreased circulating alanine transaminase level  (IAGP)
decreased circulating alkaline phosphatase level  (IAGP)
decreased circulating amylase level  (IAGP)
decreased circulating aspartate transaminase level  (IAGP)
decreased circulating calcium level  (IAGP)
decreased circulating cholesterol level  (IAGP)
decreased circulating corticosterone level  (IAGP)
decreased circulating creatinine level  (IAGP)
decreased circulating cysteine level  (IAGP)
decreased circulating free fatty acids level  (IAGP)
decreased circulating glucagon level  (IAGP)
decreased circulating glucose level  (IAGP)
decreased circulating glycerol level  (IAGP)
decreased circulating HDL cholesterol level  (IAGP)
decreased circulating insulin level  (IAGP)
decreased circulating insulin-like growth factor I level  (IAGP)
decreased circulating ketone body level  (IAGP)
decreased circulating LDL cholesterol level  (IAGP)
decreased circulating leptin level  (IAGP)
decreased circulating phospholipid level  (IAGP)
decreased circulating serum albumin level  (IAGP)
decreased circulating thyroxine level  (IAGP)
decreased circulating triglyceride level  (IAGP)
decreased circulating unsaturated transferrin level  (IAGP)
decreased circulating VLDL cholesterol level  (IAGP)
decreased circulating VLDL phospholipid level  (IAGP)
decreased circulating VLDL triglyceride level  (IAGP)
decreased cysteine level  (IAGP)
decreased double-negative T cell number  (IAGP)
decreased fasting circulating glucose level  (IAGP)
decreased fat cell size  (IAGP)
decreased fatty acid beta-oxidation  (IAGP)
decreased fatty acid oxidation  (IAGP)
decreased fatty acids level  (IAGP)
decreased glycogen catabolism rate  (IAGP)
decreased glycogen level  (IAGP)
decreased gonadal fat pad weight  (IAGP)
decreased heart weight  (IAGP)
decreased hepatic glucose production  (IAGP)
decreased hepatocyte number  (IAGP)
decreased hepatocyte proliferation  (IAGP)
decreased incidence of induced tumors  (IAGP)
decreased incidence of tumors by chemical induction  (IAGP)
decreased inguinal fat pad weight  (IAGP)
decreased insulin secretion  (IAGP)
decreased intestinal cholesterol absorption  (IAGP)
decreased kidney copper level  (IAGP)
decreased kidney weight  (IAGP)
decreased lean body mass  (IAGP)
decreased leukocyte cell number  (IAGP)
decreased litter size  (IAGP)
decreased liver cholesterol level  (IAGP)
decreased liver copper level  (IAGP)
decreased liver free fatty acids level  (IAGP)
decreased liver function  (IAGP)
decreased liver glycogen level  (IAGP)
decreased liver iron level  (IAGP)
decreased liver manganese level  (IAGP)
decreased liver triglyceride level  (IAGP)
decreased liver tumor incidence  (IAGP)
decreased liver weight  (IAGP)
decreased locomotor activity  (IAGP)
decreased lymphocyte cell number  (IAGP)
decreased mitochondrial number  (IAGP)
decreased NK T cell number  (IAGP)
decreased pancreatic beta cell mass  (IAGP)
decreased percent body fat/body weight  (IAGP)
decreased physiological sensitivity to xenobiotic  (IAGP)
decreased phytosterol level  (IAGP)
decreased respiratory quotient  (IAGP)
decreased retroperitoneal fat pad weight  (IAGP)
decreased saturated fatty acids level  (IAGP)
decreased spleen iron level  (IAGP)
decreased spleen white pulp amount  (IAGP)
decreased susceptibility to age-related hepatic steatosis  (IAGP)
decreased susceptibility to atherosclerosis  (IAGP)
decreased susceptibility to diet-induced hepatic steatosis  (IAGP)
decreased susceptibility to diet-induced non-insulin dependent diabetes  (IAGP)
decreased susceptibility to diet-induced obesity  (IAGP)
decreased susceptibility to hepatic steatosis  (IAGP)
decreased susceptibility to injury  (IAGP)
decreased susceptibility to xenobiotic induced morbidity/mortality  (IAGP)
decreased systemic arterial diastolic blood pressure  (IAGP)
decreased T cell number  (IAGP)
decreased total body fat amount  (IAGP)
decreased total fat pad weight  (IAGP)
decreased triglyceride lipase activity  (IAGP)
decreased unsaturated fatty acids level  (IAGP)
decreased urine uric acid level  (IAGP)
decreased white adipose tissue amount  (IAGP)
decreased white adipose tissue mass  (IAGP)
decreased white fat cell lipid droplet size  (IAGP)
dilated bile duct  (IAGP)
dilated mitochondrion  (IAGP)
distended abdomen  (IAGP)
enhanced autophagy  (IAGP)
enhanced behavioral response to xenobiotic  (IAGP)
enhanced lipolysis  (IAGP)
enlarged adrenal glands  (IAGP)
enlarged gallbladder  (IAGP)
enlarged liver  (IAGP)
enlarged spleen  (IAGP)
female infertility  (IAGP)
focal hepatic necrosis  (IAGP)
genetic imprinting  (IAGP)
granulomatous inflammation  (IAGP)
hemochromatosis  (IAGP)
hemoperitoneum  (IAGP)
hemorrhagic ascites  (IAGP)
hemosiderosis  (IAGP)
hepatic necrosis  (IAGP)
hepatic steatosis  (IAGP)
hyperactivity  (IAGP)
hyperglycemia  (IAGP)
hypoglycemia  (IAGP)
impaired autophagy  (IAGP)
impaired blood coagulation  (IAGP)
impaired exercise endurance  (IAGP)
impaired gluconeogenesis  (IAGP)
impaired glucose tolerance  (IAGP)
impaired lipolysis  (IAGP)
impaired liver regeneration  (IAGP)
impaired wound healing  (IAGP)
improved glucose tolerance  (IAGP)
increased acute inflammation  (IAGP)
increased alkaline phosphatase activity  (IAGP)
increased anti-nuclear antigen antibody level  (IAGP)
increased apoptosis  (IAGP)
increased autoantibody level  (IAGP)
increased bile salt level  (IAGP)
increased bleeding time  (IAGP)
increased body surface temperature  (IAGP)
increased body weight  (IAGP)
increased brown fat lipid droplet number  (IAGP)
increased carbon dioxide production  (IAGP)
increased carcinoma incidence  (IAGP)
increased cell nucleus count  (IAGP)
increased cellular glucose import  (IAGP)
increased cholangiocarcinoma incidence  (IAGP)
increased cholesterol level  (IAGP)
increased circulating alanine transaminase level  (IAGP)
increased circulating alkaline phosphatase level  (IAGP)
increased circulating ammonia level  (IAGP)
increased circulating aspartate transaminase level  (IAGP)
increased circulating bilirubin level  (IAGP)
increased circulating carnitine level  (IAGP)
increased circulating cholesterol level  (IAGP)
increased circulating ferritin level  (IAGP)
increased circulating free fatty acids level  (IAGP)
increased circulating glucagon level  (IAGP)
increased circulating glucose level  (IAGP)
increased circulating growth hormone level  (IAGP)
increased circulating HDL cholesterol level  (IAGP)
increased circulating insulin level  (IAGP)
increased circulating interleukin-1 beta level  (IAGP)
increased circulating interleukin-18 level  (IAGP)
increased circulating interleukin-6 level  (IAGP)
increased circulating iron level  (IAGP)
increased circulating ketone body level  (IAGP)
increased circulating lactate dehydrogenase level  (IAGP)
increased circulating lactate level  (IAGP)
increased circulating LDL cholesterol level  (IAGP)
increased circulating lysine level  (IAGP)
increased circulating methionine level  (IAGP)
increased circulating phospholipid level  (IAGP)
increased circulating phytosterol level  (IAGP)
increased circulating progesterone level  (IAGP)
increased circulating proline level  (IAGP)
increased circulating serine level  (IAGP)
increased circulating testosterone level  (IAGP)
increased circulating threonine level  (IAGP)
increased circulating thyroxine level  (IAGP)
increased circulating triglyceride level  (IAGP)
increased circulating triiodothyronine level  (IAGP)
increased energy expenditure  (IAGP)
increased fasting circulating glucose level  (IAGP)
increased fatty acid oxidation  (IAGP)
increased fatty acids level  (IAGP)
increased feces cholesterol level  (IAGP)
increased hamartoma incidence  (IAGP)
increased hematocrit  (IAGP)
increased hepatobiliary system tumor incidence  (IAGP)
increased hepatocellular carcinoma incidence  (IAGP)
increased hepatocyte apoptosis  (IAGP)
increased hepatocyte karyomegaly  (IAGP)
increased hepatocyte mitochondrial DNA content  (IAGP)
increased hepatocyte number  (IAGP)
increased hepatocyte proliferation  (IAGP)
increased hepatoma incidence  (IAGP)
increased IgG level  (IAGP)
increased IgM level  (IAGP)
increased incidence of tumors by chemical induction  (IAGP)
increased insulin secretion  (IAGP)
increased insulin sensitivity  (IAGP)
increased interleukin-6 secretion  (IAGP)
increased kidney weight  (IAGP)
increased lean body mass  (IAGP)
increased lipogenesis  (IAGP)
increased liver adenoma incidence  (IAGP)
increased liver cholesterol level  (IAGP)
increased liver copper level  (IAGP)
increased liver free fatty acids level  (IAGP)
increased liver glycogen level  (IAGP)
increased liver iron level  (IAGP)
increased liver triglyceride level  (IAGP)
increased liver tumor incidence  (IAGP)
increased liver weight  (IAGP)
increased metastatic potential  (IAGP)
increased mitochondrial DNA content  (IAGP)
increased mitochondrial number  (IAGP)
increased mitochondrial size  (IAGP)
increased monocyte cell number  (IAGP)
increased neutrophil cell number  (IAGP)
increased oxygen consumption  (IAGP)
increased pancreas weight  (IAGP)
increased pancreatic alpha cell number  (IAGP)
increased pancreatic alpha cell proliferation  (IAGP)
increased pancreatic beta cell mass  (IAGP)
increased partial thromboplastin time  (IAGP)
increased physiological sensitivity to xenobiotic  (IAGP)
increased prothrombin time  (IAGP)
increased respiratory quotient  (IAGP)
increased saturated fatty acids level  (IAGP)
increased spleen iron level  (IAGP)
increased susceptibility to atherosclerosis  (IAGP)
increased susceptibility to autoimmune diabetes  (IAGP)
increased susceptibility to bacterial infection induced morbidity/mortality  (IAGP)
increased susceptibility to diet-induced hepatic steatosis  (IAGP)
increased susceptibility to diet-induced obesity  (IAGP)
increased susceptibility to induced morbidity/mortality  (IAGP)
increased susceptibility to injury  (IAGP)
increased susceptibility to weight gain  (IAGP)
increased susceptibility to weight loss  (IAGP)
increased susceptibility to xenobiotic induced morbidity/mortality  (IAGP)
increased triglyceride level  (IAGP)
increased tumor latency  (IAGP)
increased tumor necrosis factor secretion  (IAGP)
increased unsaturated fatty acids level  (IAGP)
increased urine selenium level  (IAGP)
increased vascular endothelial cell number  (IAGP)
insulin resistance  (IAGP)
intrahepatic cholestasis  (IAGP)
jaundice  (IAGP)
lethargy  (IAGP)
limb grasping  (IAGP)
liver cirrhosis  (IAGP)
liver failure  (IAGP)
liver fibrosis  (IAGP)
liver hemorrhage  (IAGP)
liver hyperplasia  (IAGP)
liver inflammation  (IAGP)
macrovesicular hepatic steatosis  (IAGP)
Mallory bodies  (IAGP)
microvesicular hepatic steatosis  (IAGP)
no abnormal phenotype detected  (IAGP)
oligozoospermia  (IAGP)
oxidative stress  (IAGP)
pale liver  (IAGP)
pancreatic islet hyperplasia  (IAGP)
patent ductus venosus  (IAGP)
paternal imprinting  (IAGP)
perinatal lethality, incomplete penetrance  (IAGP)
polycythemia  (IAGP)
polydipsia  (IAGP)
polyploidy  (IAGP)
polyuria  (IAGP)
postnatal growth retardation  (IAGP)
postnatal lethality, complete penetrance  (IAGP)
postnatal lethality, incomplete penetrance  (IAGP)
pregnancy-related premature death  (IAGP)
premature death  (IAGP)
preweaning lethality, incomplete penetrance  (IAGP)
prolonged PR interval  (IAGP)
prolonged QRS complex duration  (IAGP)
reddish skin  (IAGP)
reduced fertility  (IAGP)
reticulocytosis  (IAGP)
slow movement  (IAGP)
slow postnatal weight gain  (IAGP)
small liver  (IAGP)
spleen atrophy  (IAGP)
subcutaneous hemorrhage  (IAGP)
teratozoospermia  (IAGP)
uterine hemorrhage  (IAGP)
vaginal hemorrhage  (IAGP)
weight loss  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9867845   PMID:10349636   PMID:10686614   PMID:10825207   PMID:10866673   PMID:10938127   PMID:10949030   PMID:11042159   PMID:11076861   PMID:11108252   PMID:11171994   PMID:11217851  
PMID:11287642   PMID:11557972   PMID:11909940   PMID:12176043   PMID:12466851   PMID:12482952   PMID:12507915   PMID:12529398   PMID:12538623   PMID:12566435   PMID:12588884   PMID:12606357  
PMID:12697746   PMID:12829628   PMID:12929087   PMID:14550306   PMID:14613934   PMID:14614859   PMID:14660662   PMID:14749836   PMID:14769918   PMID:14985368   PMID:15070743   PMID:15082532  
PMID:15199412   PMID:15331603   PMID:15347677   PMID:15372107   PMID:15389868   PMID:15480996   PMID:15569412   PMID:15638810   PMID:15687502   PMID:15717863   PMID:15732085   PMID:15735717  
PMID:15738389   PMID:15798202   PMID:15821749   PMID:15841208   PMID:15899812   PMID:15908240   PMID:15930274   PMID:15958390   PMID:15989949   PMID:16006652   PMID:16054078   PMID:16122419  
PMID:16141072   PMID:16141073   PMID:16155866   PMID:16202981   PMID:16214396   PMID:16278235   PMID:16293230   PMID:16301529   PMID:16374520   PMID:16382155   PMID:16404553   PMID:16449639  
PMID:16467350   PMID:16469705   PMID:16527892   PMID:16543947   PMID:16557553   PMID:16679292   PMID:16710476   PMID:16717184   PMID:16738330   PMID:16804073   PMID:16807293   PMID:16831601  
PMID:16845389   PMID:16880400   PMID:16921198   PMID:16940190   PMID:16946132   PMID:16964311   PMID:16977322   PMID:17030618   PMID:17101329   PMID:17151194   PMID:17200715   PMID:17256747  
PMID:17283057   PMID:17295835   PMID:17374357   PMID:17404621   PMID:17416680   PMID:17442273   PMID:17464988   PMID:17556363   PMID:17557118   PMID:17567478   PMID:17570221   PMID:17597094  
PMID:17646385   PMID:17699762   PMID:17699788   PMID:17854601   PMID:17904103   PMID:17908794   PMID:17942915   PMID:17951359   PMID:17996733   PMID:17998203   PMID:18026104   PMID:18042552  
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PMID:31959914   PMID:31961719   PMID:31998431   PMID:32005828   PMID:32012211   PMID:32013718   PMID:32020053   PMID:32029233   PMID:32047110   PMID:32049014   PMID:32063360   PMID:32096546  
PMID:32117320   PMID:32139604   PMID:32149416   PMID:32156724   PMID:32170127   PMID:32180557   PMID:32186897   PMID:32188584   PMID:32203162   PMID:32213347   PMID:32214246   PMID:32231246  
PMID:32246987   PMID:32253259   PMID:32269221   PMID:32273468   PMID:32283081   PMID:32300166   PMID:32305562   PMID:32350388   PMID:32372053   PMID:32374849   PMID:32381628   PMID:32381739  
PMID:32405618   PMID:32408014   PMID:32442405   PMID:32451369   PMID:32453730   PMID:32460011   PMID:32470318   PMID:32473093   PMID:32502381   PMID:32513687   PMID:32516028   PMID:32518166  
PMID:32544390   PMID:32546802   PMID:32589943   PMID:32601222   PMID:32620541   PMID:32631996   PMID:32653576   PMID:32661427   PMID:32696422   PMID:32701506   PMID:32708970   PMID:32720643  
PMID:32727846   PMID:32731332   PMID:32733884   PMID:32769011   PMID:32808644   PMID:32849636   PMID:32903542   PMID:32912901   PMID:32916153   PMID:32917816   PMID:32926477   PMID:32926856  
PMID:32932016   PMID:32987186   PMID:33029008   PMID:33035451   PMID:33045621   PMID:33067530   PMID:33086070   PMID:33127392   PMID:33127558   PMID:33135359   PMID:33147210   PMID:33147459  
PMID:33151564   PMID:33152322   PMID:33168981   PMID:33177714   PMID:33179593   PMID:33182326   PMID:33184034   PMID:33210603   PMID:33271332   PMID:33287957   PMID:33315519   PMID:33320834  
PMID:33334822   PMID:33340456   PMID:33345777   PMID:33369618   PMID:33371336   PMID:33388316   PMID:33410752   PMID:33413510   PMID:33468997   PMID:33486744   PMID:33495342   PMID:33512716  
PMID:33513427   PMID:33515644   PMID:33516881   PMID:33516905   PMID:33524375   PMID:33539533   PMID:33564095   PMID:33567280   PMID:33567453   PMID:33592335   PMID:33626352   PMID:33631143  
PMID:33638902   PMID:33647942   PMID:33657206   PMID:33662272   PMID:33676028   PMID:33690219   PMID:33718833   PMID:33725483   PMID:33758417   PMID:33761350   PMID:33812059   PMID:33812996  
PMID:33856409   PMID:33887198   PMID:33894019   PMID:33894178   PMID:33951476   PMID:33980856   PMID:34011630   PMID:34015056   PMID:34023388   PMID:34031390   PMID:34042217   PMID:34050173  
PMID:34052855   PMID:34058074   PMID:34083580   PMID:34088666   PMID:34099657   PMID:34116232   PMID:34118488   PMID:34135321   PMID:34145024   PMID:34146477   PMID:34147666   PMID:34156032  
PMID:34175669   PMID:34192533   PMID:34237252   PMID:34246805   PMID:34270928   PMID:34280453   PMID:34284164   PMID:34290257   PMID:34290295   PMID:34298930   PMID:34302744   PMID:34303878  
PMID:34309874   PMID:34348664   PMID:34349157   PMID:34352206   PMID:34358714   PMID:34396783   PMID:34406362   PMID:34413467   PMID:34425214   PMID:34431407   PMID:34493807   PMID:34496251  
PMID:34527961   PMID:34547140   PMID:34578904   PMID:34604725   PMID:34609282   PMID:34610303   PMID:34622775   PMID:34628485   PMID:34644378   PMID:34678143   PMID:34699114   PMID:34715018  
PMID:34717896   PMID:34730871   PMID:34732735   PMID:34758313   PMID:34774847   PMID:34799628   PMID:34843716   PMID:34848557   PMID:34851150   PMID:34883214   PMID:34905649   PMID:34914893  
PMID:34921145   PMID:34954226   PMID:35008754   PMID:35023384   PMID:35024626   PMID:35032404   PMID:35032459   PMID:35036868   PMID:35093339   PMID:35100024   PMID:35108418   PMID:35108517  
PMID:35120589   PMID:35145074   PMID:35177623   PMID:35177822   PMID:35203398   PMID:35204252   PMID:35220898   PMID:35222391   PMID:35238641   PMID:35248949   PMID:35258009   PMID:35269415  
PMID:35293576   PMID:35325655   PMID:35385705   PMID:35409319   PMID:35420934   PMID:35429439   PMID:35436984   PMID:35452693   PMID:35476977   PMID:35476997   PMID:35500745   PMID:35592906  
PMID:35658976   PMID:35671973   PMID:35696550   PMID:35714811   PMID:35788583   PMID:35804007   PMID:35840554   PMID:35858541   PMID:35862186   PMID:35902556   PMID:35921818   PMID:35924448  
PMID:35930768   PMID:35932995   PMID:35933634   PMID:35946312   PMID:35959865   PMID:35977507   PMID:35981754   PMID:35985474   PMID:36001682   PMID:36036554   PMID:36044577   PMID:36044839  
PMID:36064109   PMID:36071453   PMID:36122209   PMID:36134579   PMID:36193893   PMID:36209041   PMID:36232770   PMID:36238898   PMID:36243006   PMID:36252490   PMID:36256480   PMID:36281643  
PMID:36282921   PMID:36283088   PMID:36301669   PMID:36322932   PMID:36349655   PMID:36351254   PMID:36353989   PMID:36395225   PMID:36396934   PMID:36400009   PMID:36413406   PMID:36414671  
PMID:36430486   PMID:36433941   PMID:36441025   PMID:36446858   PMID:36456043   PMID:36526632   PMID:36536133   PMID:36563662   PMID:36583714   PMID:36631664   PMID:36634736   PMID:36638912  
PMID:36656901   PMID:36689486   PMID:36696903   PMID:36759613   PMID:36759751   PMID:36765862   PMID:36775129   PMID:36787740   PMID:36812201   PMID:36889282   PMID:36979389   PMID:36996941  
PMID:37018396   PMID:37022664   PMID:37028770   PMID:37030549   PMID:37084733   PMID:37102225   PMID:37108182   PMID:37124481   PMID:37133648   PMID:37141889   PMID:37156795   PMID:37165006  
PMID:37166264   PMID:37169760   PMID:37174657   PMID:37202506   PMID:37209098   PMID:37212551   PMID:37216099   PMID:37224999   PMID:37253089   PMID:37263346   PMID:37291262   PMID:37291801  
PMID:37311583   PMID:37338984   PMID:37345525   PMID:37366543   PMID:37379215   PMID:37385404   PMID:37392854   PMID:37400498   PMID:37401371   PMID:37414763   PMID:37414850   PMID:37418003  
PMID:37439255   PMID:37450601   PMID:37456841   PMID:37461848   PMID:37463052   PMID:37478012   PMID:37490042   PMID:37520673   PMID:37524868   PMID:37539028   PMID:37557173   PMID:37563227  
PMID:37567517   PMID:37591884   PMID:37595802   PMID:37595871   PMID:37597423   PMID:37601634   PMID:37629051   PMID:37673062   PMID:37712426   PMID:37716594   PMID:37737207   PMID:37741434  
PMID:37777009   PMID:37804830   PMID:37805134   PMID:37813881   PMID:37826876   PMID:37834368   PMID:37843276   PMID:37844254   PMID:37846866   PMID:37847682   PMID:37848446   PMID:37857700  
PMID:37862166   PMID:37892137   PMID:37909854   PMID:37925639   PMID:37942005   PMID:37980429   PMID:37990129   PMID:38012287   PMID:38033027   PMID:38039134   PMID:38047073   PMID:38055645  
PMID:38060450   PMID:38139034   PMID:38143800   PMID:38154274   PMID:38171331   PMID:38194265   PMID:38237602   PMID:38238601   PMID:38280375   PMID:38338668   PMID:38347107   PMID:38397122  
PMID:38442019   PMID:38447582   PMID:38459588   PMID:38499523   PMID:38533551   PMID:38603632   PMID:38619277   PMID:38648183   PMID:38656880   PMID:38687799   PMID:38718791   PMID:38729601  
PMID:38750036   PMID:38788899   PMID:38790950   PMID:38795327   PMID:38811532   PMID:38820148   PMID:38830896   PMID:38901424   PMID:38922876   PMID:38935501   PMID:38992061   PMID:39019115  
PMID:39028754   PMID:39046829   PMID:39048831   PMID:39103523   PMID:39104322   PMID:39106859   PMID:39147934   PMID:39167490   PMID:39190492   PMID:39243761   PMID:39248019   PMID:39252970  
PMID:39329419   PMID:39412985   PMID:39490313   PMID:39499573   PMID:39525584   PMID:39536746   PMID:39608054   PMID:39656588   PMID:39661520   PMID:39671290   PMID:39695225   PMID:39746607  
PMID:39762645   PMID:39799115   PMID:39862865   PMID:39976226   PMID:40076869  


Genomics

Variants

.
Variants in Speer6-ps1
790 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:134
Count of miRNA genes:128
Interacting mature miRNAs:133
Transcripts:ENSMUST00000168736
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301890Adip7_madiposity 7 (mouse)Not determined13123454672Mouse
1301255Cd4ts6_mCD4 T cell subset 6 (mouse)Not determined1316854534168684Mouse
1301227Skull19_mskull morphology 19 (mouse)Not determined13123454672Mouse
10449140Eosn2_meosinophil differential 2 (mouse)1322131134221311Mouse
1301661Tshp13_mtooth shape 13 (mouse)Not determined13123454672Mouse
15039338Nmrs34_mNAFLD-associated magnetic resonance shift 34 (mouse)1322131134221311Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000168736
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,236,206 - 3,239,317 (+)Ensembl
GRCm38.p6 Ensembl133,186,206 - 3,189,317 (+)Ensembl
Ensembl Acc Id: ENSMUST00000222775
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,219,994 - 3,223,117 (+)Ensembl
GRCm38.p6 Ensembl133,169,994 - 3,173,117 (+)Ensembl
Ensembl Acc Id: ENSMUST00000223482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,199,475 - 3,239,678 (+)Ensembl
GRCm38.p6 Ensembl133,149,475 - 3,189,678 (+)Ensembl
Ensembl Acc Id: ENSMUST00000277562
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,199,447 - 3,242,491 (+)Ensembl
Ensembl Acc Id: ENSMUST00000277563
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,199,453 - 3,242,483 (+)Ensembl
Ensembl Acc Id: ENSMUST00000277564
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,199,452 - 3,239,696 (+)Ensembl
Ensembl Acc Id: ENSMUST00000277565
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,199,430 - 3,223,441 (+)Ensembl
Ensembl Acc Id: ENSMUST00000277566
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,199,453 - 3,223,441 (+)Ensembl
Ensembl Acc Id: ENSMUST00000277567
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,200,878 - 3,223,333 (+)Ensembl
Ensembl Acc Id: ENSMUST00000277568
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,199,448 - 3,219,161 (+)Ensembl
Ensembl Acc Id: ENSMUST00000277569
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,199,449 - 3,206,862 (+)Ensembl
Ensembl Acc Id: ENSMUST00000277570
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,199,425 - 3,206,121 (+)Ensembl
Ensembl Acc Id: ENSMUST00000277571
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,199,452 - 3,206,117 (+)Ensembl
Ensembl Acc Id: ENSMUST00000277572
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl133,220,824 - 3,223,439 (+)Ensembl
RefSeq Acc Id: NR_001581
RefSeq Status: PROVISIONAL
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39133,199,475 - 3,239,678 (+)NCBI
GRCm38133,149,475 - 3,189,678 (+)ENTREZGENE
MGSCv37133,148,721 - 3,188,924 (+)RGD
Celera133,135,860 - 3,175,371 (+)RGD
cM Map13 ENTREZGENE
Sequence:
Protein Sequences
GenBank Protein BAB24683 (Get FASTA)   NCBI Sequence Viewer  

Promoters
RGD ID:8679494
Promoter ID:EPDNEW_M17778
Type:multiple initiation site
Name:Speer6-ps1_1
Description:Mus musculus spermatogenesis associated glutamate -rich protein6, pseudogene 1 (Speer6-ps1), non-coding RNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38133,149,459 - 3,149,519EPDNEW

Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSMUSG00000091304 Ensembl
  ENSMUSG00000121349 Ensembl, ENTREZGENE
Ensembl Transcript ENSMUST00000223482 ENTREZGENE
MGD MGI:1920516 ENTREZGENE
NCBI Gene 73266 ENTREZGENE
PhenoGen Speer6-ps1 PhenoGen