Sdr16c6 (short chain dehydrogenase/reductase family 16C, member 6) - Rat Genome Database

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Gene: Sdr16c6 (short chain dehydrogenase/reductase family 16C, member 6) Mus musculus
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Symbol: Sdr16c6
Name: short chain dehydrogenase/reductase family 16C, member 6
RGD ID: 1620561
MGI Page MGI
Description: Predicted to enable oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor. Predicted to be active in lipid droplet. Orthologous to human SDR16C6P (short chain dehydrogenase/reductase family 16C member 6, pseudogene).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 4833413O15Rik; Gm423; short-chain dehydrogenase/reductase family 16C member 6
RGD Orthologs
Human
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3944,055,926 - 4,077,514 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl44,055,929 - 4,077,522 (-)EnsemblGRCm39 Ensembl
GRCm3844,055,926 - 4,077,514 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl44,055,929 - 4,077,522 (-)EnsemblGRCm38mm10GRCm38
MGSCv3743,983,812 - 4,004,661 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3643,983,076 - 4,004,669 (-)NCBIMGSCv36mm8
Celera44,015,758 - 4,036,630 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map42.27NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21677750   PMID:21873635   PMID:31562240   PMID:37075844  


Genomics

Comparative Map Data
Sdr16c6
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3944,055,926 - 4,077,514 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl44,055,929 - 4,077,522 (-)EnsemblGRCm39 Ensembl
GRCm3844,055,926 - 4,077,514 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl44,055,929 - 4,077,522 (-)EnsemblGRCm38mm10GRCm38
MGSCv3743,983,812 - 4,004,661 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3643,983,076 - 4,004,669 (-)NCBIMGSCv36mm8
Celera44,015,758 - 4,036,630 (-)NCBICelera
Cytogenetic Map4A1NCBI
cM Map42.27NCBI
SDR16C6P
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38856,374,718 - 56,390,710 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl856,373,064 - 56,395,365 (-)EnsemblGRCh38hg38GRCh38
GRCh38.p14 Ensembl856,374,766 - 56,390,811 (-)EnsemblGRCh38hg38GRCh38
GRCh37857,287,277 - 57,303,269 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36857,448,181 - 57,470,478 (-)NCBINCBI36Build 36hg18NCBI36
Celera853,276,414 - 53,298,711 (-)NCBICelera
Cytogenetic Map8q12.1NCBI
HuRef852,754,522 - 52,770,378 (-)NCBIHuRef
CHM1_1857,339,285 - 57,355,153 (-)NCBICHM1_1
T2T-CHM13v2.0856,751,944 - 56,767,935 (-)NCBIT2T-CHM13v2.0

Variants

.
Variants in Sdr16c6
499 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:434
Count of miRNA genes:174
Interacting mature miRNAs:206
Transcripts:ENSMUST00000095151, ENSMUST00000108383
Prediction methods:Miranda, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10412079Sm1_msusceptibility to Schistosoma mansoni infection 1 (mouse)Not determined4122955614Mouse
11567249Elorr3_methanol induced loss of righting response 3 (mouse)43722677156268235Mouse
11049579Lmr9b_mleishmaniasis resistance 9b (mouse)4120657234Mouse
11049580Lmr9a_mleishmaniasis resistance 9 (mouse)4120657234Mouse
1301510Bbaa13_mB.burgdorferi-associated arthritis 13 (mouse)Not determined4126395649Mouse
1301274Lmr9_mleishmaniasis resistance 9 (mouse)Not determined4120657234Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000095151   ⟹   ENSMUSP00000092773
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl44,055,929 - 4,076,931 (-)Ensembl
GRCm38.p6 Ensembl44,055,929 - 4,076,931 (-)Ensembl
Ensembl Acc Id: ENSMUST00000108383   ⟹   ENSMUSP00000104020
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl44,055,931 - 4,077,522 (-)Ensembl
GRCm38.p6 Ensembl44,055,931 - 4,077,522 (-)Ensembl
RefSeq Acc Id: NM_001080710   ⟹   NP_001074179
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3944,056,665 - 4,077,514 (-)NCBI
GRCm3844,056,665 - 4,077,514 (-)NCBI
MGSCv3743,983,812 - 4,004,661 (-)RGD
Celera44,015,758 - 4,036,630 (-)RGD
cM Map4 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_017320193   ⟹   XP_017175682
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3944,055,926 - 4,075,801 (-)NCBI
GRCm3844,055,926 - 4,075,803 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001074179 (Get FASTA)   NCBI Sequence Viewer  
  XP_017175682 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAI25451 (Get FASTA)   NCBI Sequence Viewer  
  AAI25453 (Get FASTA)   NCBI Sequence Viewer  
  EDL05701 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000092773.6
  ENSMUSP00000104020
  ENSMUSP00000104020.2
GenBank Protein Q05A13 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001074179   ⟸   NM_001080710
- UniProtKB: Q05A13 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_017175682   ⟸   XM_017320193
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSMUSP00000104020   ⟸   ENSMUST00000108383
Ensembl Acc Id: ENSMUSP00000092773   ⟸   ENSMUST00000095151

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q05A13-F1-model_v2 AlphaFold Q05A13 1-316 view protein structure

Promoters
RGD ID:6882740
Promoter ID:EPDNEW_M4820
Type:multiple initiation site
Name:Sdr16c6_1
Description:Mus musculus short chain dehydrogenase/reductase family 16C,member 6 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3844,077,519 - 4,077,579EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2685269 AgrOrtholog
Ensembl Genes ENSMUSG00000071019 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000095151.12 UniProtKB/Swiss-Prot
  ENSMUST00000108383 ENTREZGENE
  ENSMUST00000108383.2 UniProtKB/Swiss-Prot
Gene3D-CATH NAD(P)-binding Rossmann-like Domain UniProtKB/Swiss-Prot
InterPro NAD(P)-bd_dom_sf UniProtKB/Swiss-Prot
  SDR_fam UniProtKB/Swiss-Prot
KEGG Report mmu:242286 UniProtKB/Swiss-Prot
MGD MGI:2685269 ENTREZGENE
NCBI Gene 242286 ENTREZGENE
PANTHER PKSB UniProtKB/Swiss-Prot
  SHORT-CHAIN DEHYDROGENASE/REDUCTASE FAMILY 16C MEMBER 6 UniProtKB/Swiss-Prot
Pfam adh_short UniProtKB/Swiss-Prot
PhenoGen Sdr16c6 PhenoGen
PRINTS GDHRDH UniProtKB/Swiss-Prot
  SDRFAMILY UniProtKB/Swiss-Prot
Superfamily-SCOP SSF51735 UniProtKB/Swiss-Prot
UniProt Q05A13 ENTREZGENE, UniProtKB/Swiss-Prot