Btbd17 (BTB domain containing 17) - Rat Genome Database

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Gene: Btbd17 (BTB domain containing 17) Mus musculus
Analyze
Symbol: Btbd17
Name: BTB domain containing 17
RGD ID: 1619988
MGI Page MGI
Description: Predicted to be located in extracellular region. Is expressed in central nervous system; intestine; liver; olfactory epithelium; and retina. Orthologous to human BTBD17 (BTB domain containing 17).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: 1500005I02Rik; BTB (POZ) domain containing 17; BTB/POZ domain-containing protein 17; galectin-3-binding protein-like; Tang; Tango10a
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,681,495 - 114,692,738 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,682,043 - 114,686,771 (-)EnsemblGRCm39 Ensembl
GRCm3811114,790,669 - 114,801,916 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,791,217 - 114,795,945 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711114,651,983 - 114,657,206 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,606,759 - 114,611,982 (-)NCBIMGSCv36mm8
Celera11126,551,653 - 126,556,876 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.54NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15226823   PMID:15618518   PMID:16141072   PMID:16141073   PMID:16602821  
PMID:18287559   PMID:21677750   PMID:30635555   PMID:32581705   PMID:33601422   PMID:34321999   PMID:38355793  


Genomics

Comparative Map Data
Btbd17
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3911114,681,495 - 114,692,738 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl11114,682,043 - 114,686,771 (-)EnsemblGRCm39 Ensembl
GRCm3811114,790,669 - 114,801,916 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl11114,791,217 - 114,795,945 (-)EnsemblGRCm38mm10GRCm38
MGSCv3711114,651,983 - 114,657,206 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv3611114,606,759 - 114,611,982 (-)NCBIMGSCv36mm8
Celera11126,551,653 - 126,556,876 (-)NCBICelera
Cytogenetic Map11E2NCBI
cM Map1180.54NCBI
BTBD17
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381774,356,416 - 74,363,327 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1774,356,416 - 74,361,868 (-)EnsemblGRCh38hg38GRCh38
GRCh371772,352,555 - 72,358,007 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361769,864,150 - 69,869,553 (-)NCBINCBI36Build 36hg18NCBI36
Celera1768,945,277 - 68,950,680 (-)NCBICelera
Cytogenetic Map17q25.1NCBI
HuRef1767,762,254 - 67,767,273 (-)NCBIHuRef
CHM1_11772,417,197 - 72,422,598 (-)NCBICHM1_1
T2T-CHM13v2.01775,247,050 - 75,253,964 (-)NCBIT2T-CHM13v2.0
Btbd17
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr810100,325,177 - 100,331,669 (-)NCBIGRCr8
mRatBN7.21099,826,132 - 99,832,624 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1099,826,132 - 99,832,624 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx10104,884,580 - 104,891,092 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.010104,347,701 - 104,354,213 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01099,747,201 - 99,753,689 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.010103,334,052 - 103,341,820 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl10103,334,052 - 103,340,922 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.010102,991,771 - 102,999,504 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.410104,674,002 - 104,680,503 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1098,416,268 - 98,422,760 (-)NCBICelera
Cytogenetic Map10q32.1NCBI
Btbd17
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555531,247,702 - 1,252,581 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049555531,247,702 - 1,271,777 (-)NCBIChiLan1.0ChiLan1.0
BTBD17
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21990,386,874 - 90,402,269 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11795,209,808 - 95,225,216 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01768,295,368 - 68,302,595 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11773,853,405 - 73,858,760 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1773,853,645 - 73,858,684 (-)Ensemblpanpan1.1panPan2
BTBD17
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.196,046,811 - 6,052,843 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl96,047,911 - 6,052,088 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha96,668,812 - 6,674,822 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.096,719,394 - 6,725,404 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl96,720,247 - 6,724,688 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.196,759,917 - 6,765,926 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.096,863,516 - 6,869,577 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.096,923,390 - 6,929,270 (+)NCBIUU_Cfam_GSD_1.0
Btbd17
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244056026,628,736 - 6,633,081 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936655126,622 - 130,898 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936655126,645 - 130,898 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTBD17
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl126,770,172 - 6,775,152 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1126,770,105 - 6,775,595 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2126,735,809 - 6,741,912 (+)NCBISscrofa10.2Sscrofa10.2susScr3
BTBD17
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11647,262,362 - 47,277,915 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1647,272,495 - 47,277,672 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366607718,075,667 - 18,091,150 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Btbd17
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248014,319,607 - 4,324,214 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248014,319,216 - 4,325,131 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Btbd17
415 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1549
Count of miRNA genes:574
Interacting mature miRNAs:700
Transcripts:ENSMUST00000000206, ENSMUST00000137965, ENSMUST00000141386, ENSMUST00000141481, ENSMUST00000146853, ENSMUST00000156053, ENSMUST00000156192
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1302034Pkccl_mprotein kinase C content in lungs (mouse)Not determined1191604608121973369Mouse
1300944Alcp20_malcohol preference locus 20 (mouse)Not determined1195403965121973369Mouse
1301072Eae22_mexperimental allergic encephalomyelitis 22 (mouse)Not determined1182377698116377820Mouse
39128214Lwq20_mliver weight QTL 20 (mouse)1112268637118022724Mouse
1301012Vispl_mvisual placing (mouse)Not determined11101022590121973369Mouse
1301983Berr2_mberghei resistance locus 2 (mouse)Not determined1198352609121973369Mouse
4141939Pregq2_mpregnancy QTL 2 (mouse)Not determined1194063779118022724Mouse
1300766Skull16_mskull morphology 16 (mouse)Not determined1181574481115574636Mouse
10043976Obq33_mobesity QTL 33 (mouse)Not determined1198500469121973369Mouse
1301057Nidd4_mnon-insulin-dependent diabetes mellitus 4 (mouse)Not determined1196810136121973369Mouse
4141612Cia40_mcollagen induced arthritis 40 (mouse)Not determined11103273992115021444Mouse
1301958Alcp18_malcohol preference locus 18 (mouse)Not determined1195403965121973369Mouse
14747003Mancz9_mmandible centroid size 9 (mouse)1185844911119844911Mouse
10412288Carg4_mCandida albicans resistance gene 4 (mouse)Not determined1181810267115810267Mouse
11251723Ewc5_methanol withdrawal and consumption 5 (mouse)1189869251121973369Mouse
15014785Mvlq1_mmacrovesicular liver lesion QTL 1 (mouse)1186608320120608320Mouse
4141465Dbm2_mdiabetes modifier 2 (mouse)Not determined94437183118022724Mouse
15039374Adip29_madiposity 29 (mouse)1186608320120608320Mouse
1300962Cd8mts4_mCD8 memory T cell subset 4 (mouse)Not determined1196137674121973369Mouse
1301095El6_mepilepsy 6 (mouse)Not determined1193229183121973369Mouse
11341721Rvfs2_mRift Valley fever susceptibility 2 (mouse)11100254186120887165Mouse
27226731Tibmd4_mtibia midshaft diameter 4, 10 week (mouse)1194190826118890826Mouse
15039376Bw42_mbody weight QTL 42 (mouse)1186608320120608320Mouse
1558753Ath19_matherosclerosis 19 (mouse)Not determined1191604608121973369Mouse
10044001Alcw8_malcohol withdrawal 8 (mouse)Not determined1199254187121973369Mouse
1300649Crhq1_mcompensatory renal hypertrophy QTL 1 (mouse)Not determined1181574481115574636Mouse
27226789Feml16_mfemur length 16, 10 week (mouse)1187490826121873369Mouse
11553867Stmm5_mskin tumor modifier of MSM 5 (mouse)11100058103121973369Mouse
10044007Hbnr14_mHeligmosomoides bakeri nematode resistance 14 (mouse)Not determined1187502600121502698Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000000206   ⟹   ENSMUSP00000000206
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,682,043 - 114,686,723 (-)Ensembl
GRCm38.p6 Ensembl11114,791,217 - 114,795,897 (-)Ensembl
Ensembl Acc Id: ENSMUST00000137965
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,683,295 - 114,686,718 (-)Ensembl
GRCm38.p6 Ensembl11114,792,469 - 114,795,892 (-)Ensembl
Ensembl Acc Id: ENSMUST00000141386
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,683,258 - 114,686,699 (-)Ensembl
GRCm38.p6 Ensembl11114,792,432 - 114,795,873 (-)Ensembl
Ensembl Acc Id: ENSMUST00000141481
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,682,932 - 114,686,771 (-)Ensembl
GRCm38.p6 Ensembl11114,792,106 - 114,795,945 (-)Ensembl
Ensembl Acc Id: ENSMUST00000146853
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,683,111 - 114,686,725 (-)Ensembl
GRCm38.p6 Ensembl11114,792,285 - 114,795,899 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156053
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,682,043 - 114,686,699 (-)Ensembl
GRCm38.p6 Ensembl11114,791,217 - 114,795,873 (-)Ensembl
Ensembl Acc Id: ENSMUST00000156192
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl11114,682,043 - 114,686,736 (-)Ensembl
GRCm38.p6 Ensembl11114,791,217 - 114,795,910 (-)Ensembl
RefSeq Acc Id: NM_028055   ⟹   NP_082331
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911114,681,495 - 114,686,718 (-)NCBI
GRCm3811114,790,669 - 114,795,892 (-)NCBI
MGSCv3711114,651,983 - 114,657,206 (-)RGD
Celera11126,551,653 - 126,556,876 (-)RGD
cM Map11 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006534278   ⟹   XP_006534341
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911114,682,043 - 114,688,739 (-)NCBI
GRCm3811114,791,217 - 114,797,913 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006534280   ⟹   XP_006534343
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911114,682,043 - 114,692,738 (-)NCBI
GRCm3811114,791,217 - 114,801,916 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314777   ⟹   XP_017170266
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911114,682,043 - 114,692,679 (-)NCBI
GRCm3811114,791,217 - 114,801,853 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017314778   ⟹   XP_017170267
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3911114,682,043 - 114,686,751 (-)NCBI
GRCm3811114,791,217 - 114,795,897 (-)NCBI
Sequence:
RefSeq Acc Id: NP_082331   ⟸   NM_028055
- Peptide Label: precursor
- UniProtKB: Q9DB72 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006534343   ⟸   XM_006534280
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_006534341   ⟸   XM_006534278
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_017170266   ⟸   XM_017314777
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017170267   ⟸   XM_017314778
- Peptide Label: isoform X3
- Sequence:
Ensembl Acc Id: ENSMUSP00000000206   ⟸   ENSMUST00000000206
Protein Domains
BACK   BTB

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9DB72-F1-model_v2 AlphaFold Q9DB72 1-478 view protein structure

Promoters
RGD ID:6820510
Promoter ID:MM_KWN:10483
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   Spleen
Transcripts:ENSMUST00000000206,   OTTMUST00000007349,   OTTMUST00000007351,   OTTMUST00000007352,   OTTMUST00000007353,   OTTMUST00000007354,   UC007MFT.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv3611114,656,776 - 114,658,222 (-)MPROMDB
RGD ID:8677284
Promoter ID:EPDNEW_M16672
Type:single initiation site
Name:Btbd17_1
Description:Mus musculus BTB domain containing 17 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm3811114,795,894 - 114,795,954EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1919264 AgrOrtholog
Ensembl Genes ENSMUSG00000000202 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000000206 ENTREZGENE
  ENSMUST00000000206.4 UniProtKB/Swiss-Prot
Gene3D-CATH 1.25.40.420 UniProtKB/Swiss-Prot
InterPro BACK UniProtKB/Swiss-Prot
  BTB-POZ/Galectin-3-binding UniProtKB/Swiss-Prot
  BTB/POZ_dom UniProtKB/Swiss-Prot
  SKP1/BTB/POZ_sf UniProtKB/Swiss-Prot
KEGG Report mmu:72014 UniProtKB/Swiss-Prot
MGD MGI:1919264 ENTREZGENE
NCBI Gene 72014 ENTREZGENE
PANTHER BTB/POZ DOMAIN-CONTAINING PROTEIN 17 UniProtKB/Swiss-Prot
  HL07962P-RELATED UniProtKB/Swiss-Prot
Pfam BACK UniProtKB/Swiss-Prot
  BTB UniProtKB/Swiss-Prot
PhenoGen Btbd17 PhenoGen
PROSITE BTB UniProtKB/Swiss-Prot
SMART BACK UniProtKB/Swiss-Prot
  BTB UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54695 UniProtKB/Swiss-Prot
UniProt BTBDH_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-04 Btbd17  BTB domain containing 17  Btbd17  BTB (POZ) domain containing 17  Symbol and/or name change 5135510 APPROVED