Lrtm2 (leucine-rich repeats and transmembrane domains 2)

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Gene: Lrtm2 (leucine-rich repeats and transmembrane domains 2) Mus musculus

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Symbol:

Lrtm2

Name:

leucine-rich repeats and transmembrane domains 2

RGD ID:

1619882

MGI Page

MGI

Description:

Predicted to enable Roundabout binding activity and heparin binding activity. Acts upstream of or within positive regulation of synapse assembly. Predicted to be located in membrane. Orthologous to human LRTM2 (leucine rich repeats and transmembrane domains 2).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

A230084J22; AI841794; expressed sequence AI841794; leucine-rich repeat and transmembrane domain-containing protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	119,292,094 - 119,315,009 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	119,292,094 - 119,307,727 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	119,315,133 - 119,332,270 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	119,315,133 - 119,330,766 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	119,265,151 - 119,280,784 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	119,280,752 - 119,296,352 (-)	NCBI		MGSCv36	mm8
Celera	6	121,147,730 - 121,163,399 (-)	NCBI		Celera
Cytogenetic Map	6	F1	NCBI
cM Map	6	56.73	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Hyperphosphatemic Familial Tumoral Calcinosis 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (EXP)

1,2-dichloroethane (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (EXP)

aflatoxin B1 (ISO)

amitrole (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[b]fluoranthene (EXP)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbon nanotube (EXP)

choline (EXP)

chrysene (EXP)

diethyl maleate (ISO)

dioxygen (ISO)

doxorubicin (ISO)

endosulfan (ISO)

folic acid (EXP)

furan (ISO)

L-methionine (EXP)

methapyrilene (ISO)

methimazole (ISO)

ozone (EXP)

perfluorooctane-1-sulfonic acid (EXP)

rotenone (ISO)

sodium arsenite (EXP)

sodium dichromate (ISO)

testosterone (ISO)

tetrachloromethane (ISO)

tetraphene (EXP)

thioacetamide (ISO)

trichloroethene (ISO)

triptonide (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IBA)

negative chemotaxis (IBA)

positive regulation of synapse assembly (IDA)

Cellular Component

membrane (IEA)

Molecular Function

heparin binding (IBA)

Roundabout binding (IBA)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal response to novel object (IAGP)

abnormal response to novelty (IAGP)

decreased body weight (IAGP)

decreased nervous system dopamine level (IAGP)

decreased serotonin level (IAGP)

decreased social investigation (IAGP)

enhanced coordination (IAGP)

increased coping response (IAGP)

increased noradrenaline level (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:14610273	PMID:15489334	PMID:16141072	PMID:16141073	PMID:18799693
PMID:21677750	PMID:21873635	PMID:23375831	PMID:24613359	PMID:35615067

Genomics

Comparative Map Data

Lrtm2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	119,292,094 - 119,315,009 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	119,292,094 - 119,307,727 (-)	Ensembl		GRCm39 Ensembl
GRCm38	6	119,315,133 - 119,332,270 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	119,315,133 - 119,330,766 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	6	119,265,151 - 119,280,784 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	6	119,280,752 - 119,296,352 (-)	NCBI		MGSCv36	mm8
Celera	6	121,147,730 - 121,163,399 (-)	NCBI		Celera
Cytogenetic Map	6	F1	NCBI
cM Map	6	56.73	NCBI

LRTM2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	12	1,820,565 - 1,836,753 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	12	1,820,267 - 1,836,753 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	12	1,929,731 - 1,945,919 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	12	1,799,956 - 1,816,179 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	12	3,537,149 - 3,553,636 (+)	NCBI		Celera
Cytogenetic Map	12	p13.33	NCBI
HuRef	12	1,783,986 - 1,800,486 (+)	NCBI		HuRef
CHM1_1	12	1,928,563 - 1,945,065 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	12	1,816,705 - 1,832,896 (+)	NCBI		T2T-CHM13v2.0

Lrtm2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	154,158,165 - 154,180,389 (-)	NCBI		GRCr8
mRatBN7.2	4	152,485,863 - 152,508,248 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	152,485,866 - 152,500,377 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	4	158,752,102 - 158,766,645 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	154,535,796 - 154,550,343 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	153,159,133 - 153,173,676 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	151,375,568 - 151,397,485 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	151,375,572 - 151,390,263 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	4	217,290,880 - 217,306,404 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	4	155,624,127 - 155,638,784 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	4	141,350,062 - 141,364,759 (-)	NCBI		Celera
Cytogenetic Map	4	q42	NCBI

Lrtm2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955454	4,355,695 - 4,373,207 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955454	4,355,698 - 4,372,041 (+)	NCBI	ChiLan1.0	ChiLan1.0

LRTM2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	10	7,342,264 - 7,377,148 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	12	7,339,023 - 7,373,909 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	12	1,932,851 - 1,949,485 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	12	1,882,930 - 1,899,407 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	12	1,882,930 - 1,899,407 (+)	Ensembl	panpan1.1		panPan2

LRTM2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	27	43,870,799 - 43,887,584 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	27	43,877,684 - 43,887,595 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	27	2,797,581 - 2,814,474 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	27	44,240,902 - 44,257,802 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	27	44,241,162 - 44,257,803 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	27	44,168,928 - 44,185,811 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	27	44,141,593 - 44,158,471 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	27	2,155,295 - 2,172,195 (-)	NCBI		UU_Cfam_GSD_1.0

Lrtm2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404945	107,131,669 - 107,148,423 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936606	2,042,844 - 2,055,028 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936606	2,035,359 - 2,052,188 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRTM2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	5	68,822,539 - 68,836,514 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	5	68,821,815 - 68,836,518 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	5	70,968,145 - 70,992,730 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRTM2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	11	1,867,081 - 1,884,255 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666063	6,442,908 - 6,452,268 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrtm2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624735	11,055,971 - 11,066,338 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624735	11,056,080 - 11,073,939 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Lrtm2
824 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	2610
Count of miRNA genes:	555
Interacting mature miRNAs:	683
Transcripts:	ENSMUST00000068351, ENSMUST00000112756, ENSMUST00000124192, ENSMUST00000168793
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4142079	Skmw15_m	skeletal muscle weight 15 (mouse)			Not determined		6	116829851	149588044	Mouse
10043864	T2dm4sa_m	type 2 diabetes mellitus 4 in SMXA RI mice (mouse)			Not determined		6	83690851	146954059	Mouse
11252138	Clas1_m	carcinogen-induced lung adenoma susceptibility 1 (mouse)					6	112246918	146954059	Mouse
8552704	Cia43_m	collagen induced arthritis QTL 43 (mouse)			Not determined		6	114159241	119737532	Mouse
1300887	Pabr1_m	plasma apolipoprotein B (human) regulator 1 (mouse)			Not determined		6	103754405	136400690	Mouse
1301915	Chab3_m	cholesterol absorption 3 (mouse)			Not determined		6	98908709	132916997	Mouse
1301083	Bhr5_m	bronchial hyperresponsiveness 5 (mouse)			Not determined		6	115694477	132578150	Mouse
1301658	Radpf3_m	radiation pulmonary fibrosis 3 (mouse)			Not determined		6	115219814	146330736	Mouse
10043923	Bhr7_m	bronchial hyperresponsiveness 7 (mouse)			Not determined		6	98219814	132219938	Mouse
4141940	W6q5_m	weight 6 weeks QTL 5 (mouse)			Not determined			96632912	146535124	Mouse
4140980	Mvwf2_m	modifier of von Willebrand factor 2 (mouse)			Not determined			114345693	145601739	Mouse
4142259	Tabw2_m	tally ho associated body weight 2 (mouse)			Not determined			46912919	136400690	Mouse
25314319	Histh6_m	histamine hypersensitivity 6 (mouse)					6	48696934	125336963	Mouse
4141295	Rua_m	raffinose acetate tasting (mouse)			Not determined			115546805	149549364	Mouse
25314320	Histh5_m	histamine hypersensitivity 5 (mouse)					6	48696934	148351498	Mouse
1301509	Sluc3_m	susceptibility to lung cancer 3 (mouse)			Not determined		6	104480321	127019938	Mouse
1301962	Eila2_m	ethanol induced locomotor activity 2 (mouse)			Not determined		6	48703490	125333748	Mouse
1301262	Gasa3_m	gastritis type A susceptibility locus 3 (mouse)			Not determined		6	88982366	122982564	Mouse
1301518	Bbaa5_m	B.burgdorferi-associated arthritis 5 (mouse)			Not determined		6	98483798	145881170	Mouse
11353842	Bmiq4_m	body mass index QTL 4 (mouse)					6	92584287	146330736	Mouse
1302131	Bmd8_m	bone mineral density 8 (mouse)			Not determined		6	99132089	133132228	Mouse
10412157	Fl1n_m	fatty liver 1 in NSY (mouse)			Not determined		6	45290993	128811995	Mouse
1301744	Hdlq11_m	HDL QTL 11 (mouse)			Not determined		6	87480321	121480516	Mouse
26884414	Bzwq12_m	bi-zygomatic width QTL 12, 16 week (mouse)					6	3400000	139076998	Mouse
1357555	Tesq2_m	testis weight QTL 2 (mouse)			Not determined		6	96632912	146535124	Mouse
10043891	Tilss4_m	TNF-induced lethal shock susceptibility 3 (mouse)			Not determined		6	112246918	125333748	Mouse
1301244	Ichs_m	immediate cutaneous hypersensitivity QTL (mouse)			Not determined		6	90772571	124772807	Mouse
4142416	Egq11_m	early growth QTL 11 (mouse)			Not determined			96632912	146535124	Mouse
1301923	Lith6_m	lithogenic gene 6 (mouse)			Not determined		6	98694477	132694676	Mouse
10412207	Cypr5_m	cytokine production 5 (mouse)			Not determined		6	110815180	144815323	Mouse
1300704	Cia3_m	collagen induced arthritis QTL 3 (mouse)			Not determined		6	96324286	130324483	Mouse
1301152	Athsq2_m	atherosclerosis susceptibility QTL 2 (mouse)			Not determined		6	117059949	149588044	Mouse
13463481	Mcvq14_m	mean corpuscular volume QTL 14 (mouse)					6	111142448	145142541	Mouse
1301927	Etohcta6_m	ethanol conditioned taste aversion 6 (mouse)			Not determined		6	115578005	149578150	Mouse
4141194	Cyx_m	cycloheximide tasting (mouse)			Not determined			115546805	149549364	Mouse
4141064	Ath37_m	atherosclerosis 37 (mouse)			Not determined		6	116641858	128495988	Mouse
1357806	Aaj3_m	anxiety in A/J 3 (mouse)			Not determined		6	104480321	136400690	Mouse
13506930	Recrq9_m	recombination rate in male meiosis QTL 9 (mouse)					6	73476983	134676963	Mouse
4141699	Ibdq2_m	inflammatory bowel disease QTL 2 (mouse)			Not determined			105982366	120894102	Mouse
4141889	Qui_m	quinine sensitivity, taste (mouse)			Not determined			115546805	149549364	Mouse
4141376	Dbm1_m	diabetes modifier 1 (mouse)			Not determined		6	78606487	121092347	Mouse
1301292	Cfbw2_m	cystic fibrosis body weight 2 (mouse)			Not determined		6	94981612	128981699	Mouse
11040599	Lmr4b_m	leishmaniasis resistance 4b (mouse)					6	96324286	130324483	Mouse

Markers in Region

AI841794

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	6	119,315,298 - 119,315,401	UniSTS	GRCm38
MGSCv37	6	119,265,316 - 119,265,419	UniSTS	GRCm37
Celera	6	121,147,895 - 121,147,998	UniSTS
Cytogenetic Map	6	F1	UniSTS
Whitehead/MRC_RH	6	1223.41	UniSTS

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001172207	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001411507	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001411508	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_172492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_177279	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_177280	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_177281	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036166005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_036166006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC115816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AEKQ02165760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK039006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK045494	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BB561311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC058944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BY240877	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CJ164348	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000068351 ⟹ ENSMUSP00000063882

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	119,292,094 - 119,307,727 (-)	Ensembl
GRCm38.p6 Ensembl	6	119,315,133 - 119,330,766 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000112756 ⟹ ENSMUSP00000108376

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	119,292,094 - 119,307,718 (-)	Ensembl
GRCm38.p6 Ensembl	6	119,315,133 - 119,330,757 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000124192 ⟹ ENSMUSP00000115884

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	119,300,610 - 119,306,165 (-)	Ensembl
GRCm38.p6 Ensembl	6	119,323,649 - 119,329,204 (-)	Ensembl

Ensembl Acc Id:

ENSMUST00000168793 ⟹ ENSMUSP00000126661

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	6	119,292,094 - 119,306,165 (-)	Ensembl
GRCm38.p6 Ensembl	6	119,315,133 - 119,329,204 (-)	Ensembl

RefSeq Acc Id:

NM_001172207 ⟹ NP_001165678

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	119,292,094 - 119,306,301 (-)	NCBI
GRCm38	6	119,315,133 - 119,329,204 (-)	NCBI
MGSCv37	6	119,265,151 - 119,280,784 (-)	RGD
Celera	6	121,147,730 - 121,163,399 (-)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

TTTGAGGTTTGGCTAGAGGATGTGTCTGCGCTCAGGACAAGCTTACCCTAGTCTCATTTTCCAA
GTGCCAAGACCCAGAGTCAGGGTCTTGCTTTAGTCAGGTCGTTGTGTCTCTCAGGCCAGCAGCA
GAAGAGCAGGAAGCCCTGACCTGCGGGAGTTATAAATCGGCCAGCTGGCAGAAGACCAAGCTTG
TAATTCACCTCAAGGTGATAGTGGGCTCAGAGGCAGGGGGTGGTGCAGCAGCTCACTCCCTACC
TGTCAGCAGCAGCTACAAGGGAAGGGCCTCGCCTCTGCCTCCCCACAGCTATGGACTGACACGT
GGCACATGCTGAGGGGCTCTCTCCAGAGCTGCGGAGAGTGTGGGTTTCACCATGTTGGCACCAG
GCGGTGGCCCAGAGCAGAGGAGCAAGCTTGTCCTGCAATGGAGGCAGGTCTCCTGGATCACCTG
CTGGATTGCCCTGTGTGCTGTGGAGGTGATCCCTGCCTGCCCCTTCTCCTGCACATGTGACAGT
CGCAGCTTGGAGGTGGACTGCAGTGGCCTGGGTCTCACCACTGTACCCCCGGATGTGCCCGCGG
CCACCCAAAGCCTTTTGCTCCTGAACAATAAGCTGAGTGCCCTACCAAGCTGGGCATTCGCCAA
CCTGTCCAACCTGCAGCGACTGGACCTGTCCAACAACTTTCTTGACCAGCTCCCCCGGTCCATT
TTCGAGGACTTGGTCAATCTGACAGAGCTCCAGCTTCGGAATAACAGCATCAGGACCCTGGACA
GGGACCTGCTCCAGCACTCCCCACTACTTAGACATCTGGATTTGTCTATCAACGGCTTGGCCCA
GCTGCCCCCGGGGCTTTTTGATGGGCTCCTGGCTCTGCGCTCCTTGTCCCTCCGCTCCAATCGT
CTGCAGAGCCTGGACCGGCTGACGTTCGAGCCCCTGGCAAGCCTGCAGCTGCTTCAGGTTGGGG
ACAACCCGTGGGAGTGTGACTGCAACCTTCGGGAATTCAAACACTGGCTGGAGTGGTTCTCCTA
CAGAGGGGGTCGCCTGGATCAGCTTGCCTGTACCCTACCCAAGGAGCTAAGGGGGAAGGACATG
CGTGCGGTCCCCATGGAGATGTTTAACTACTGTTCCCAGCTAGAGGATGAGAACAACTCTGCTG
GGCTAGATGCTCCAGGACCACCCTGCACCAAGGCCAGCCCGGAGCCTCCTAAACCTAAGCCTGG
GGCTGAGCCTGAGCCCGAACCCAGCACTGCCTGCCCACAGAAGCAGAGGTACCGGCCCGTGAGT
GTGCGGCGAGCCATTGGCACAGTGATCATCGCCGGGGTCGTGTGTGGCATTGTCTGCATCATGA
TGGTGGTGGCCGCTGCTTACGGCTGCATCTACGCATCTCTCATGGCCAAGTACCACCGTGAGCT
CAAGAAGCGCCAGCCGCTGATGGGGGACCCTGAGGGTGAGCATGAAGATCAGAAGCAGATCTCG
TCTGTGGCATGAGAGCTGTCTGTCTGGCCCAGGTAGGACAGCAAGGAGACTCCATGGGACTGCT
ACCAAAAGGGCTGCCCTTCCCTCCATCACAGGCCCCGTCTCAGCCTGACACTGGGACTGCCTCC
CTCAGCTCCCTCGTCCCAATCTCTTTCCAAGTTTCCCAGAGGCTTCCCTCGGGCCAAAGATTCC
CGTGGAAGGTCTTCTCTGGGCCTCTTGTCTTTGGAACCCCTGAGCCTCGCTGTAGGCTTCTGGC
CACAGGGAGGAAAGAACCTACTCTAGAGACATCATCTGCACTGAGCACTTCCCTCCTGCCCAGG
GCTGCCAGAGCTGGTGACTCTCCCTACCTCTTTCTCATTCCCACTTCAGTCTGCATTAGGGCCT
GGGAGGGAGGGACAGGAGGCCCAAAGGTAGATTTCTGTGACTCCTTTTAAAGCCAGAAAGATGT
CTCAAGTCTTTTGCAGTGTGAAGCTTGTCCAGCTCTTAGCCAATGTGAAACCACCCCAGTCCTG
TGATCTGGGTCCAATGTTTAGAAAAACCAAAGTGGCTATAATGTCCCCCTTGGGTGGATGTCAT
TATGTCCCTTTATTGGCTATAGACTCCTCTGACTACATTGCTCCAGGTTTACGAATTCTATCCA
TACTTTTTGTTCTAGCGTGAGGTTTTGAGACAGGGCCTTACTCTATATACTAATTCCTCTGTCA
GGCAGGGCATCAAAGTCACACACACACACACACACACACACAGACACACACACACATCATGAGA
ACTTGGGGCAGAGGCCTGCTATCCCCTGAGCCCAGAGGCCACAGCCCCTCTTACTTCCTGACTA
CAGTCTTCCCATGTCATCAGGGGTTGGGTCCTGGACGACAACACAGGGATCCTTTGAGACCCTC
TTAAGTGGGCCAAAGTATGCAGCTGGAGAAATTGCATTGTCCTGGCAGCCCTAGCACCTCTCTT
GCTAGGTTTACCAGAAGGGTGCACATATGCATGACGGGTTCCAGGCGTCTGAGAGCTCTGTTGC
AGACCCCCGGGCATGCCTAGGAACCTCTTCCCTGCAGGTTCCAGGTACACGCAGCAGTTTCTAC
CCCTGCAGCCTGGCTTCTCCTGTCTCCTCTGTCATCTGCATCATTTGTGCATGACCTCAGAGAC
TGGGTCTGGGCTGTGCTCTGAGTTTGGTGTTTCACCTTAAGGAAAGCAGATGTCAGGCAGTAAG
TCCTTGAGAAGGCTGGCTGCCTTCAACACATCCCCGACAGACTGCAGGAACAGGGACAGGATGG
CTACATTCTGTTCAGAGTCCTTGACGGTGGGGCTTTCTTTCCCAGGGGTTCATCGGCTCTGCCT
GGTTTCCTGGGAGTGTGCAATCGCACCTGGACTACCCAGGCTAAAAAAATGGCTGCAGTCCTAT
CTGGTTTGGAGATTCTTGCCCCTGGGCTGTGCACATTTTCAAGGTCACTGCTCTCTGTTCTAAA
CTGTCCCCTCCTTAGAGACTAGATACCTCTGTAGGAGATGCCAGACTGATACCTTACCCTGGGA
AGGTCTTGGTAGTAGCCAGGAACACACTTAGGCACTGACTATACACCTATGAGGGCCTCAGGGC
AGCCTCTCAGCCCTCCTTCTTGTCCTCGGCCACCTATTCGACTAGCAGGGGTGAGTACTGGAAG
TCTCAGAAGAGCCTCCAAGGTTGTTCTCTGGCAGGTAGACAGAGAGCACCGGCTGCTGTTCAGG
ATCACAGGATCCTCTAGGCTGGGCCACAGTCTTCCTTCCTCTTTTGACTGGTGGGCCAATCCCA
GAGCTGGGATTTTCTAAGGGCCTGGGGGAGGGAGGGTGTTGTCAGTGGTGATATCTTTAGCCTG
AGACAGAAGATTTTTAAAGGCAAAATTATATTTCTGGTTTGTCGTTTCAGAAGACCAATAAAGA
CTATTTTCCTATGTAA

hide sequence

RefSeq Acc Id:

NM_001411507 ⟹ NP_001398436

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	119,292,094 - 119,309,328 (-)	NCBI

RefSeq Acc Id:

NM_001411508 ⟹ NP_001398437

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	119,292,094 - 119,307,755 (-)	NCBI

RefSeq Acc Id:

NM_172492 ⟹ NP_766080

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	119,292,094 - 119,307,755 (-)	NCBI
GRCm38	6	119,315,133 - 119,330,766 (-)	NCBI
MGSCv37	6	119,265,151 - 119,280,784 (-)	RGD
Celera	6	121,147,730 - 121,163,399 (-)	RGD
cM Map	6		ENTREZGENE

Sequence:

show sequence

TTGCTTGCTGTTGAGCACGCGCGCTCTGATCCTTCTACCTCTCCCCCTCTTCGGTCTGTCTTCC
TCCCGCCCTCCCTCTTTCGCTTCAGTTTGTCGCTGACCCCGCAGCCCCCTCCCCGGCAGCGGCA
GCTCAGCCTGCGGGTCCGCCTCCTTCACAGGCGCTGCCCAGTCTCCCGCTGCCCTGAACCAGAC
CGGACATCCCTGCGTTCTGCCTGCCAAGCTGCCCGTGTGTCCGGCTACCTGGTCTGAGCATCAG
GTCCCGGTGCAAAAAGGTCGTTGTGTCTCTCAGGCCAGCAGCAGAAGAGCAGGAAGCCCTGACC
TGCGGGAGTTATAAATCGGCCAGCTGGCAGAAGACCAAGCTTGTAATTCACCTCAAGGTGATAG
TGGGCTCAGAGGCAGGGGGTGGTGCAGCAGCTCACTCCCTACCTGTCAGCAGCAGCTACAAGGG
AAGGGCCTCGCCTCTGCCTCCCCACAGCTATGGACTGACACGTGGCACATGCTGAGGGGCTCTC
TCCAGAGCTGCGGAGAGTGTGGGTTTCACCATGTTGGCACCAGGCGGTGGCCCAGAGCAGAGGA
GCAAGCTTGTCCTGCAATGGAGGCAGGTCTCCTGGATCACCTGCTGGATTGCCCTGTGTGCTGT
GGAGGTGATCCCTGCCTGCCCCTTCTCCTGCACATGTGACAGTCGCAGCTTGGAGGTGGACTGC
AGTGGCCTGGGTCTCACCACTGTACCCCCGGATGTGCCCGCGGCCACCCAAAGCCTTTTGCTCC
TGAACAATAAGCTGAGTGCCCTACCAAGCTGGGCATTCGCCAACCTGTCCAACCTGCAGCGACT
GGACCTGTCCAACAACTTTCTTGACCAGCTCCCCCGGTCCATTTTCGAGGACTTGGTCAATCTG
ACAGAGCTCCAGCTTCGGAATAACAGCATCAGGACCCTGGACAGGGACCTGCTCCAGCACTCCC
CACTACTTAGACATCTGGATTTGTCTATCAACGGCTTGGCCCAGCTGCCCCCGGGGCTTTTTGA
TGGGCTCCTGGCTCTGCGCTCCTTGTCCCTCCGCTCCAATCGTCTGCAGAGCCTGGACCGGCTG
ACGTTCGAGCCCCTGGCAAGCCTGCAGCTGCTTCAGGTTGGGGACAACCCGTGGGAGTGTGACT
GCAACCTTCGGGAATTCAAACACTGGCTGGAGTGGTTCTCCTACAGAGGGGGTCGCCTGGATCA
GCTTGCCTGTACCCTACCCAAGGAGCTAAGGGGGAAGGACATGCGTGCGGTCCCCATGGAGATG
TTTAACTACTGTTCCCAGCTAGAGGATGAGAACAACTCTGCTGGGCTAGATGCTCCAGGACCAC
CCTGCACCAAGGCCAGCCCGGAGCCTCCTAAACCTAAGCCTGGGGCTGAGCCTGAGCCCGAACC
CAGCACTGCCTGCCCACAGAAGCAGAGGTACCGGCCCGTGAGTGTGCGGCGAGCCATTGGCACA
GTGATCATCGCCGGGGTCGTGTGTGGCATTGTCTGCATCATGATGGTGGTGGCCGCTGCTTACG
GCTGCATCTACGCATCTCTCATGGCCAAGTACCACCGTGAGCTCAAGAAGCGCCAGCCGCTGAT
GGGGGACCCTGAGGGTGAGCATGAAGATCAGAAGCAGATCTCGTCTGTGGCATGAGAGCTGTCT
GTCTGGCCCAGGTAGGACAGCAAGGAGACTCCATGGGACTGCTACCAAAAGGGCTGCCCTTCCC
TCCATCACAGGCCCCGTCTCAGCCTGACACTGGGACTGCCTCCCTCAGCTCCCTCGTCCCAATC
TCTTTCCAAGTTTCCCAGAGGCTTCCCTCGGGCCAAAGATTCCCGTGGAAGGTCTTCTCTGGGC
CTCTTGTCTTTGGAACCCCTGAGCCTCGCTGTAGGCTTCTGGCCACAGGGAGGAAAGAACCTAC
TCTAGAGACATCATCTGCACTGAGCACTTCCCTCCTGCCCAGGGCTGCCAGAGCTGGTGACTCT
CCCTACCTCTTTCTCATTCCCACTTCAGTCTGCATTAGGGCCTGGGAGGGAGGGACAGGAGGCC
CAAAGGTAGATTTCTGTGACTCCTTTTAAAGCCAGAAAGATGTCTCAAGTCTTTTGCAGTGTGA
AGCTTGTCCAGCTCTTAGCCAATGTGAAACCACCCCAGTCCTGTGATCTGGGTCCAATGTTTAG
AAAAACCAAAGTGGCTATAATGTCCCCCTTGGGTGGATGTCATTATGTCCCTTTATTGGCTATA
GACTCCTCTGACTACATTGCTCCAGGTTTACGAATTCTATCCATACTTTTTGTTCTAGCGTGAG
GTTTTGAGACAGGGCCTTACTCTATATACTAATTCCTCTGTCAGGCAGGGCATCAAAGTCACAC
ACACACACACACACACACACAGACACACACACACATCATGAGAACTTGGGGCAGAGGCCTGCTA
TCCCCTGAGCCCAGAGGCCACAGCCCCTCTTACTTCCTGACTACAGTCTTCCCATGTCATCAGG
GGTTGGGTCCTGGACGACAACACAGGGATCCTTTGAGACCCTCTTAAGTGGGCCAAAGTATGCA
GCTGGAGAAATTGCATTGTCCTGGCAGCCCTAGCACCTCTCTTGCTAGGTTTACCAGAAGGGTG
CACATATGCATGACGGGTTCCAGGCGTCTGAGAGCTCTGTTGCAGACCCCCGGGCATGCCTAGG
AACCTCTTCCCTGCAGGTTCCAGGTACACGCAGCAGTTTCTACCCCTGCAGCCTGGCTTCTCCT
GTCTCCTCTGTCATCTGCATCATTTGTGCATGACCTCAGAGACTGGGTCTGGGCTGTGCTCTGA
GTTTGGTGTTTCACCTTAAGGAAAGCAGATGTCAGGCAGTAAGTCCTTGAGAAGGCTGGCTGCC
TTCAACACATCCCCGACAGACTGCAGGAACAGGGACAGGATGGCTACATTCTGTTCAGAGTCCT
TGACGGTGGGGCTTTCTTTCCCAGGGGTTCATCGGCTCTGCCTGGTTTCCTGGGAGTGTGCAAT
CGCACCTGGACTACCCAGGCTAAAAAAATGGCTGCAGTCCTATCTGGTTTGGAGATTCTTGCCC
CTGGGCTGTGCACATTTTCAAGGTCACTGCTCTCTGTTCTAAACTGTCCCCTCCTTAGAGACTA
GATACCTCTGTAGGAGATGCCAGACTGATACCTTACCCTGGGAAGGTCTTGGTAGTAGCCAGGA
ACACACTTAGGCACTGACTATACACCTATGAGGGCCTCAGGGCAGCCTCTCAGCCCTCCTTCTT
GTCCTCGGCCACCTATTCGACTAGCAGGGGTGAGTACTGGAAGTCTCAGAAGAGCCTCCAAGGT
TGTTCTCTGGCAGGTAGACAGAGAGCACCGGCTGCTGTTCAGGATCACAGGATCCTCTAGGCTG
GGCCACAGTCTTCCTTCCTCTTTTGACTGGTGGGCCAATCCCAGAGCTGGGATTTTCTAAGGGC
CTGGGGGAGGGAGGGTGTTGTCAGTGGTGATATCTTTAGCCTGAGACAGAAGATTTTTAAAGGC
AAAATTATATTTCTGGTTTGTCGTTTCAGAAGACCAATAAAGACTATTTTCCTATGTAA

hide sequence

RefSeq Acc Id:

NR_177279

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	119,299,124 - 119,309,328 (-)	NCBI

RefSeq Acc Id:

NR_177280

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	119,299,124 - 119,309,328 (-)	NCBI

RefSeq Acc Id:

NR_177281

RefSeq Status:

VALIDATED

Type:

NON-CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	119,299,124 - 119,307,755 (-)	NCBI

RefSeq Acc Id:

XM_036166005 ⟹ XP_036021898

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	119,292,094 - 119,315,009 (-)	NCBI

Sequence:

show sequence

GCTCACTCTAGCAGCCGAGGAGGGCTGAACCCTGCAGTCAGGGTCAGGAAGGGGGCCTTTGAGG
AAGAAGTAGTCCACAGAGCAACACAGGACACTGAACCTGTGCTCTGGGAAGAACTTACAGTGTC
CTCGCAGCTCTTCAGGCACGGCCCCTCTACAGCGTTGCACTGGAAGGAAGAAGGGACATCTGTG
AACGGTGTGCACCTGCCTGGCGCTGCCCAGTCTCCCGCTGCCCTGAACCAGACCGGACATCCCT
GCGTTCTGCCTGCCAAGCTGCCCGTGTGTCCGGCTACCTGGTCTGAGCATCAGGTCCCGGTGCA
AAAAGGTCGTTGTGTCTCTCAGGCCAGCAGCAGAAGAGCAGGAAGCCCTGACCTGCGGGAGTTA
TAAATCGGCCAGCTGGCAGAAGACCAAGCTTGTAATTCACCTCAAGGTGATAGTGGGCTCAGAG
GCAGGGGGTGGTGCAGCAGCTCACTCCCTACCTGTCAGCAGCAGCTACAAGGGAAGGGCCTCGC
CTCTGCCTCCCCACAGCTATGGACTGACACGTGGCACATGCTGAGGGGCTCTCTCCAGAGCTGC
GGAGAGTGTGGGTTTCACCATGTTGGCACCAGGCGGTGGCCCAGAGCAGAGGAGCAAGCTTGTC
CTGCAATGGAGGCAGGTCTCCTGGATCACCTGCTGGATTGCCCTGTGTGCTGTGGAGGTGATCC
CTGCCTGCCCCTTCTCCTGCACATGTGACAGTCGCAGCTTGGAGGTGGACTGCAGTGGCCTGGG
TCTCACCACTGTACCCCCGGATGTGCCCGCGGCCACCCAAAGCCTTTTGCTCCTGAACAATAAG
CTGAGTGCCCTACCAAGCTGGGCATTCGCCAACCTGTCCAACCTGCAGCGACTGGACCTGTCCA
ACAACTTTCTTGACCAGCTCCCCCGGTCCATTTTCGAGGACTTGGTCAATCTGACAGAGCTCCA
GCTTCGGAATAACAGCATCAGGACCCTGGACAGGGACCTGCTCCAGCACTCCCCACTACTTAGA
CATCTGGATTTGTCTATCAACGGCTTGGCCCAGCTGCCCCCGGGGCTTTTTGATGGGCTCCTGG
CTCTGCGCTCCTTGTCCCTCCGCTCCAATCGTCTGCAGAGCCTGGACCGGCTGACGTTCGAGCC
CCTGGCAAGCCTGCAGCTGCTTCAGGTTGGGGACAACCCGTGGGAGTGTGACTGCAACCTTCGG
GAATTCAAACACTGGCTGGAGTGGTTCTCCTACAGAGGGGGTCGCCTGGATCAGCTTGCCTGTA
CCCTACCCAAGGAGCTAAGGGGGAAGGACATGCGTGCGGTCCCCATGGAGATGTTTAACTACTG
TTCCCAGCTAGAGGATGAGAACAACTCTGCTGGGCTAGATGCTCCAGGACCACCCTGCACCAAG
GCCAGCCCGGAGCCTCCTAAACCTAAGCCTGGGGCTGAGCCTGAGCCCGAACCCAGCACTGCCT
GCCCACAGAAGCAGAGGTACCGGCCCGTGAGTGTGCGGCGAGCCATTGGCACAGTGATCATCGC
CGGGGTCGTGTGTGGCATTGTCTGCATCATGATGGTGGTGGCCGCTGCTTACGGCTGCATCTAC
GCATCTCTCATGGCCAAGTACCACCGTGAGCTCAAGAAGCGCCAGCCGCTGATGGGGGACCCTG
AGGGTGAGCATGAAGATCAGAAGCAGATCTCGTCTGTGGCATGAGAGCTGTCTGTCTGGCCCAG
GTAGGACAGCAAGGAGACTCCATGGGACTGCTACCAAAAGGGCTGCCCTTCCCTCCATCACAGG
CCCCGTCTCAGCCTGACACTGGGACTGCCTCCCTCAGCTCCCTCGTCCCAATCTCTTTCCAAGT
TTCCCAGAGGCTTCCCTCGGGCCAAAGATTCCCGTGGAAGGTCTTCTCTGGGCCTCTTGTCTTT
GGAACCCCTGAGCCTCGCTGTAGGCTTCTGGCCACAGGGAGGAAAGAACCTACTCTAGAGACAT
CATCTGCACTGAGCACTTCCCTCCTGCCCAGGGCTGCCAGAGCTGGTGACTCTCCCTACCTCTT
TCTCATTCCCACTTCAGTCTGCATTAGGGCCTGGGAGGGAGGGACAGGAGGCCCAAAGGTAGAT
TTCTGTGACTCCTTTTAAAGCCAGAAAGATGTCTCAAGTCTTTTGCAGTGTGAAGCTTGTCCAG
CTCTTAGCCAATGTGAAACCACCCCAGTCCTGTGATCTGGGTCCAATGTTTAGAAAAACCAAAG
TGGCTATAATGTCCCCCTTGGGTGGATGTCATTATGTCCCTTTATTGGCTATAGACTCCTCTGA
CTACATTGCTCCAGGTTTACGAATTCTATCCATACTTTTTGTTCTAGCGTGAGGTTTTGAGACA
GGGCCTTACTCTATATACTAATTCCTCTGTCAGGCAGGGCATCAAAGTCACACACACACACACA
CACACACACAGACACACACACACATCATGAGAACTTGGGGCAGAGGCCTGCTATCCCCTGAGCC
CAGAGGCCACAGCCCCTCTTACTTCCTGACTACAGTCTTCCCATGTCATCAGGGGTTGGGTCCT
GGACGACAACACAGGGATCCTTTGAGACCCTCTTAAGTGGGCCAAAGTATGCAGCTGGAGAAAT
TGCATTGTCCTGGCAGCCCTAGCACCTCTCTTGCTAGGTTTACCAGAAGGGTGCACATATGCAT
GACGGGTTCCAGGCGTCTGAGAGCTCTGTTGCAGACCCCCGGGCATGCCTAGGAACCTCTTCCC
TGCAGGTTCCAGGTACACGCAGCAGTTTCTACCCCTGCAGCCTGGCTTCTCCTGTCTCCTCTGT
CATCTGCATCATTTGTGCATGACCTCAGAGACTGGGTCTGGGCTGTGCTCTGAGTTTGGTGTTT
CACCTTAAGGAAAGCAGATGTCAGGCAGTAAGTCCTTGAGAAGGCTGGCTGCCTTCAACACATC
CCCGACAGACTGCAGGAACAGGGACAGGATGGCTACATTCTGTTCAGAGTCCTTGACGGTGGGG
CTTTCTTTCCCAGGGGTTCATCGGCTCTGCCTGGTTTCCTGGGAGTGTGCAATCGCACCTGGAC
TACCCAGGCTAAAAAAATGGCTGCAGTCCTATCTGGTTTGGAGATTCTTGCCCCTGGGCTGTGC
ACATTTTCAAGGTCACTGCTCTCTGTTCTAAACTGTCCCCTCCTTAGAGACTAGATACCTCTGT
AGGAGATGCCAGACTGATACCTTACCCTGGGAAGGTCTTGGTAGTAGCCAGGAACACACTTAGG
CACTGACTATACACCTATGAGGGCCTCAGGGCAGCCTCTCAGCCCTCCTTCTTGTCCTCGGCCA
CCTATTCGACTAGCAGGGGTGAGTACTGGAAGTCTCAGAAGAGCCTCCAAGGTTGTTCTCTGGC
AGGTAGACAGAGAGCACCGGCTGCTGTTCAGGATCACAGGATCCTCTAGGCTGGGCCACAGTCT
TCCTTCCTCTTTTGACTGGTGGGCCAATCCCAGAGCTGGGATTTTCTAAGGGCCTGGGGGAGGG
AGGGTGTTGTCAGTGGTGATATCTTTAGCCTGAGACAGAAGATTTTTAAAGGCAAAATTATATT
TCTGGTTTGTCGTTTCAGAAGACCAATAAAGACTATTTTCCTATGTA

hide sequence

RefSeq Acc Id:

XM_036166006 ⟹ XP_036021899

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	6	119,292,094 - 119,308,540 (-)	NCBI

Sequence:

show sequence

TCAAGGCGCGCCCAGCCCTGCATATAACATAGAGAAAGGACCCTGAGATACATATTCATGCTGT
GTTACCTACAAGCTAGATCATCTGCTGAACAGGCAGGATGTAAAGGAATGAGGCCTGTTTCAGG
CTGCAGGCTGGGAAGTCCAGCTTCTCTTCTGGCTTAGCCTCTGGCTCAGCCCCGCATTGGAAGG
AACACTCTTTATGCCAGTGAATGGCAATGTGTTAGACTTGCTCTGTCTTGATTGGGAGAGAGGT
CTTAGACCACCAAGGCCAGCTCCTTCAGTTCCCCGTGTGCACAGAGGCACATGGTCTCTGCTTG
TTGTTCCTTCAGGTTGCAGCTGCGTGCTCTGACACCTCTCTCTCCCAAATAGTCCTGGCCAAGG
GTGGTCACATCTACAGACTCAGCCCCTTGTCTAAAGGGCTTTCTGTTGCCTTGGCATCTCTGAG
GACCCTCAGCGTTCCTCTTGTAAGAGGAACTCAGCCTTTAAGGAGCTGGTTTTTCCTTATCAGA
ACTGGGGTCTGACACAGGAGACAGACCTAGTGTTCCGGCAGGTCTAAGATCCAAGACAGTCAGC
GGGGCTGTGTTTTGGGTCCTGTACCCCTTGGAAGGTCCTGCCTTCTAGACAGCCAGAGATGGCC
GCTCCTGGGAGGCGCTGCCCAGTCTCCCGCTGCCCTGAACCAGACCGGACATCCCTGCGTTCTG
CCTGCCAAGCTGCCCGTGTGTCCGGCTACCTGGTCTGAGCATCAGGTCCCGGTGCAAAAAGGTC
GTTGTGTCTCTCAGGCCAGCAGCAGAAGAGCAGGAAGCCCTGACCTGCGGGAGTTATAAATCGG
CCAGCTGGCAGAAGACCAAGCTTGTAATTCACCTCAAGGTGATAGTGGGCTCAGAGGCAGGGGG
TGGTGCAGCAGCTCACTCCCTACCTGTCAGCAGCAGCTACAAGGGAAGGGCCTCGCCTCTGCCT
CCCCACAGCTATGGACTGACACGTGGCACATGCTGAGGGGCTCTCTCCAGAGCTGCGGAGAGTG
TGGGTTTCACCATGTTGGCACCAGGCGGTGGCCCAGAGCAGAGGAGCAAGCTTGTCCTGCAATG
GAGGCAGGTCTCCTGGATCACCTGCTGGATTGCCCTGTGTGCTGTGGAGGTGATCCCTGCCTGC
CCCTTCTCCTGCACATGTGACAGTCGCAGCTTGGAGGTGGACTGCAGTGGCCTGGGTCTCACCA
CTGTACCCCCGGATGTGCCCGCGGCCACCCAAAGCCTTTTGCTCCTGAACAATAAGCTGAGTGC
CCTACCAAGCTGGGCATTCGCCAACCTGTCCAACCTGCAGCGACTGGACCTGTCCAACAACTTT
CTTGACCAGCTCCCCCGGTCCATTTTCGAGGACTTGGTCAATCTGACAGAGCTCCAGCTTCGGA
ATAACAGCATCAGGACCCTGGACAGGGACCTGCTCCAGCACTCCCCACTACTTAGACATCTGGA
TTTGTCTATCAACGGCTTGGCCCAGCTGCCCCCGGGGCTTTTTGATGGGCTCCTGGCTCTGCGC
TCCTTGTCCCTCCGCTCCAATCGTCTGCAGAGCCTGGACCGGCTGACGTTCGAGCCCCTGGCAA
GCCTGCAGCTGCTTCAGGTTGGGGACAACCCGTGGGAGTGTGACTGCAACCTTCGGGAATTCAA
ACACTGGCTGGAGTGGTTCTCCTACAGAGGGGGTCGCCTGGATCAGCTTGCCTGTACCCTACCC
AAGGAGCTAAGGGGGAAGGACATGCGTGCGGTCCCCATGGAGATGTTTAACTACTGTTCCCAGC
TAGAGGATGAGAACAACTCTGCTGGGCTAGATGCTCCAGGACCACCCTGCACCAAGGCCAGCCC
GGAGCCTCCTAAACCTAAGCCTGGGGCTGAGCCTGAGCCCGAACCCAGCACTGCCTGCCCACAG
AAGCAGAGGTACCGGCCCGTGAGTGTGCGGCGAGCCATTGGCACAGTGATCATCGCCGGGGTCG
TGTGTGGCATTGTCTGCATCATGATGGTGGTGGCCGCTGCTTACGGCTGCATCTACGCATCTCT
CATGGCCAAGTACCACCGTGAGCTCAAGAAGCGCCAGCCGCTGATGGGGGACCCTGAGGGTGAG
CATGAAGATCAGAAGCAGATCTCGTCTGTGGCATGAGAGCTGTCTGTCTGGCCCAGGTAGGACA
GCAAGGAGACTCCATGGGACTGCTACCAAAAGGGCTGCCCTTCCCTCCATCACAGGCCCCGTCT
CAGCCTGACACTGGGACTGCCTCCCTCAGCTCCCTCGTCCCAATCTCTTTCCAAGTTTCCCAGA
GGCTTCCCTCGGGCCAAAGATTCCCGTGGAAGGTCTTCTCTGGGCCTCTTGTCTTTGGAACCCC
TGAGCCTCGCTGTAGGCTTCTGGCCACAGGGAGGAAAGAACCTACTCTAGAGACATCATCTGCA
CTGAGCACTTCCCTCCTGCCCAGGGCTGCCAGAGCTGGTGACTCTCCCTACCTCTTTCTCATTC
CCACTTCAGTCTGCATTAGGGCCTGGGAGGGAGGGACAGGAGGCCCAAAGGTAGATTTCTGTGA
CTCCTTTTAAAGCCAGAAAGATGTCTCAAGTCTTTTGCAGTGTGAAGCTTGTCCAGCTCTTAGC
CAATGTGAAACCACCCCAGTCCTGTGATCTGGGTCCAATGTTTAGAAAAACCAAAGTGGCTATA
ATGTCCCCCTTGGGTGGATGTCATTATGTCCCTTTATTGGCTATAGACTCCTCTGACTACATTG
CTCCAGGTTTACGAATTCTATCCATACTTTTTGTTCTAGCGTGAGGTTTTGAGACAGGGCCTTA
CTCTATATACTAATTCCTCTGTCAGGCAGGGCATCAAAGTCACACACACACACACACACACACA
CAGACACACACACACATCATGAGAACTTGGGGCAGAGGCCTGCTATCCCCTGAGCCCAGAGGCC
ACAGCCCCTCTTACTTCCTGACTACAGTCTTCCCATGTCATCAGGGGTTGGGTCCTGGACGACA
ACACAGGGATCCTTTGAGACCCTCTTAAGTGGGCCAAAGTATGCAGCTGGAGAAATTGCATTGT
CCTGGCAGCCCTAGCACCTCTCTTGCTAGGTTTACCAGAAGGGTGCACATATGCATGACGGGTT
CCAGGCGTCTGAGAGCTCTGTTGCAGACCCCCGGGCATGCCTAGGAACCTCTTCCCTGCAGGTT
CCAGGTACACGCAGCAGTTTCTACCCCTGCAGCCTGGCTTCTCCTGTCTCCTCTGTCATCTGCA
TCATTTGTGCATGACCTCAGAGACTGGGTCTGGGCTGTGCTCTGAGTTTGGTGTTTCACCTTAA
GGAAAGCAGATGTCAGGCAGTAAGTCCTTGAGAAGGCTGGCTGCCTTCAACACATCCCCGACAG
ACTGCAGGAACAGGGACAGGATGGCTACATTCTGTTCAGAGTCCTTGACGGTGGGGCTTTCTTT
CCCAGGGGTTCATCGGCTCTGCCTGGTTTCCTGGGAGTGTGCAATCGCACCTGGACTACCCAGG
CTAAAAAAATGGCTGCAGTCCTATCTGGTTTGGAGATTCTTGCCCCTGGGCTGTGCACATTTTC
AAGGTCACTGCTCTCTGTTCTAAACTGTCCCCTCCTTAGAGACTAGATACCTCTGTAGGAGATG
CCAGACTGATACCTTACCCTGGGAAGGTCTTGGTAGTAGCCAGGAACACACTTAGGCACTGACT
ATACACCTATGAGGGCCTCAGGGCAGCCTCTCAGCCCTCCTTCTTGTCCTCGGCCACCTATTCG
ACTAGCAGGGGTGAGTACTGGAAGTCTCAGAAGAGCCTCCAAGGTTGTTCTCTGGCAGGTAGAC
AGAGAGCACCGGCTGCTGTTCAGGATCACAGGATCCTCTAGGCTGGGCCACAGTCTTCCTTCCT
CTTTTGACTGGTGGGCCAATCCCAGAGCTGGGATTTTCTAAGGGCCTGGGGGAGGGAGGGTGTT
GTCAGTGGTGATATCTTTAGCCTGAGACAGAAGATTTTTAAAGGCAAAATTATATTTCTGGTTT
GTCGTTTCAGAAGACCAATAAAGACTATTTTCCTATGTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001165678	(Get FASTA)	NCBI Sequence Viewer
	NP_001398436	(Get FASTA)	NCBI Sequence Viewer
	NP_001398437	(Get FASTA)	NCBI Sequence Viewer
	NP_766080	(Get FASTA)	NCBI Sequence Viewer
	XP_036021898	(Get FASTA)	NCBI Sequence Viewer
	XP_036021899	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH58944	(Get FASTA)	NCBI Sequence Viewer
	BAC30200	(Get FASTA)	NCBI Sequence Viewer
	BAC32394	(Get FASTA)	NCBI Sequence Viewer
	EDK99608	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000063882.8
	ENSMUSP00000108376
	ENSMUSP00000108376.2
	ENSMUSP00000115884.2
	ENSMUSP00000126661
	ENSMUSP00000126661.2
GenBank Protein	Q8BGX3	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_766080 ⟸ NM_172492
- Peptide Label:	precursor
- UniProtKB:	Q8BGX3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLAPGGGPEQRSKLVLQWRQVSWITCWIALCAVEVIPACPFSCTCDSRSLEVDCSGLGLTTVPP DVPAATQSLLLLNNKLSALPSWAFANLSNLQRLDLSNNFLDQLPRSIFEDLVNLTELQLRNNSI RTLDRDLLQHSPLLRHLDLSINGLAQLPPGLFDGLLALRSLSLRSNRLQSLDRLTFEPLASLQL LQVGDNPWECDCNLREFKHWLEWFSYRGGRLDQLACTLPKELRGKDMRAVPMEMFNYCSQLEDE NNSAGLDAPGPPCTKASPEPPKPKPGAEPEPEPSTACPQKQRYRPVSVRRAIGTVIIAGVVCGI VCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDPEGEHEDQKQISSVA hide sequence

RefSeq Acc Id:	NP_001165678 ⟸ NM_001172207
- Peptide Label:	precursor
- UniProtKB:	Q8BGX3 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MLAPGGGPEQRSKLVLQWRQVSWITCWIALCAVEVIPACPFSCTCDSRSLEVDCSGLGLTTVPP DVPAATQSLLLLNNKLSALPSWAFANLSNLQRLDLSNNFLDQLPRSIFEDLVNLTELQLRNNSI RTLDRDLLQHSPLLRHLDLSINGLAQLPPGLFDGLLALRSLSLRSNRLQSLDRLTFEPLASLQL LQVGDNPWECDCNLREFKHWLEWFSYRGGRLDQLACTLPKELRGKDMRAVPMEMFNYCSQLEDE NNSAGLDAPGPPCTKASPEPPKPKPGAEPEPEPSTACPQKQRYRPVSVRRAIGTVIIAGVVCGI VCIMMVVAAAYGCIYASLMAKYHRELKKRQPLMGDPEGEHEDQKQISSVA hide sequence

Ensembl Acc Id:

ENSMUSP00000115884 ⟸ ENSMUST00000124192

Ensembl Acc Id:

ENSMUSP00000063882 ⟸ ENSMUST00000068351

Ensembl Acc Id:

ENSMUSP00000108376 ⟸ ENSMUST00000112756

Ensembl Acc Id:

ENSMUSP00000126661 ⟸ ENSMUST00000168793

RefSeq Acc Id:	XP_036021898 ⟸ XM_036166005
- Peptide Label:	isoform X1
- UniProtKB:	Q8BGX3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	XP_036021899 ⟸ XM_036166006
- Peptide Label:	isoform X1
- UniProtKB:	Q8BGX3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001398436 ⟸ NM_001411507
- Peptide Label:	precursor
- UniProtKB:	Q8BGX3 (UniProtKB/Swiss-Prot)

RefSeq Acc Id:	NP_001398437 ⟸ NM_001411508
- Peptide Label:	precursor
- UniProtKB:	Q8BGX3 (UniProtKB/Swiss-Prot)

Protein Domains

LRRCT LRRNT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q8BGX3-F1-model_v2	AlphaFold	Q8BGX3	1-370	view protein structure

Promoters

RGD ID:

6839590

Promoter ID:

MM_KWN:47365

Type:

Non-CpG

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Brain, Kidney

Transcripts:

NM_001172207, OTTMUST00000057328

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	6	119,279,521 - 119,280,021 (-)	MPROMDB

RGD ID:

6890820

Promoter ID:

EPDNEW_M8861

Type:

initiation region

Name:

Lrtm2_1

Description:

Mus musculus leucine-rich repeats and transmembrane domains 2, transcript variant 1, mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	6	119,330,794 - 119,330,854	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2141485	AgrOrtholog
Ensembl Genes	ENSMUSG00000055003	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSMUST00000068351.14	UniProtKB/Swiss-Prot
	ENSMUST00000112756	ENTREZGENE
	ENSMUST00000112756.8	UniProtKB/Swiss-Prot
	ENSMUST00000124192.2	UniProtKB/TrEMBL
	ENSMUST00000168793	ENTREZGENE
	ENSMUST00000168793.8	UniProtKB/Swiss-Prot
Gene3D-CATH	3.80.10.10	UniProtKB/Swiss-Prot
InterPro	Cys-rich_flank_reg_C	UniProtKB/Swiss-Prot
	Leu-rich_rpt	UniProtKB/Swiss-Prot
	Leu-rich_rpt_typical-subtyp	UniProtKB/Swiss-Prot
	LRR_dom_sf	UniProtKB/Swiss-Prot
	LRR_TM_domain-containing	UniProtKB/Swiss-Prot
	LRRNT	UniProtKB/Swiss-Prot
KEGG Report	mmu:211187	UniProtKB/Swiss-Prot
MGD	MGI:2141485	ENTREZGENE
NCBI Gene	Lrtm2	ENTREZGENE
PANTHER	ANTIGEN BSP, PUTATIVE-RELATED	UniProtKB/Swiss-Prot
	LEUCINE RICH REPEATS AND TRANSMEMBRANE DOMAINS 2	UniProtKB/Swiss-Prot
Pfam	LRR_8	UniProtKB/Swiss-Prot
	LRRNT	UniProtKB/Swiss-Prot
PhenoGen	Lrtm2	PhenoGen
PROSITE	LRR	UniProtKB/Swiss-Prot
SMART	LRR_TYP	UniProtKB/Swiss-Prot
	LRRCT	UniProtKB/Swiss-Prot
	LRRNT	UniProtKB/Swiss-Prot
Superfamily-SCOP	L domain-like	UniProtKB/Swiss-Prot
UniProt	D3YY28_MOUSE	UniProtKB/TrEMBL
	LRTM2_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2024-08-21	Lrtm2	leucine-rich repeats and transmembrane domains 2	AI841794	expressed sequence AI841794	Symbol and/or name change	5135510	APPROVED
2024-08-21	AI841794	expressed sequence AI841794	Lrtm2	leucine-rich repeats and transmembrane domains 2	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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