1700067K01Rik (RIKEN cDNA 1700067K01 gene) - Rat Genome Database

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Gene: 1700067K01Rik (RIKEN cDNA 1700067K01 gene) Mus musculus
Analyze
Symbol: 1700067K01Rik
Name: RIKEN cDNA 1700067K01 gene
RGD ID: 1619106
MGI Page MGI
Description: Acts upstream of or within in utero embryonic development. Orthologous to human C19orf67 (chromosome 19 open reading frame 67).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC73453; UPF0575 protein C19orf67 homolog
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,727,145 - 84,731,399 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,728,131 - 84,731,399 (+)EnsemblGRCm39 Ensembl
GRCm38884,000,516 - 84,004,770 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,001,502 - 84,004,770 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,525,605 - 86,528,669 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,891,657 - 86,894,875 (+)NCBIMGSCv36mm8
Celera888,295,023 - 88,298,103 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.24NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:16141072   PMID:16141073   PMID:21267068   PMID:21677750   PMID:27996060   PMID:28185240  
PMID:29539633   PMID:30973865   PMID:38355793  


Genomics

Comparative Map Data
1700067K01Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39884,727,145 - 84,731,399 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl884,728,131 - 84,731,399 (+)EnsemblGRCm39 Ensembl
GRCm38884,000,516 - 84,004,770 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl884,001,502 - 84,004,770 (+)EnsemblGRCm38mm10GRCm38
MGSCv37886,525,605 - 86,528,669 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36886,891,657 - 86,894,875 (+)NCBIMGSCv36mm8
Celera888,295,023 - 88,298,103 (+)NCBICelera
Cytogenetic Map8C2NCBI
cM Map840.24NCBI
C19orf67
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381914,081,624 - 14,085,783 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1914,081,624 - 14,085,875 (-)EnsemblGRCh38hg38GRCh38
GRCh371914,192,436 - 14,196,595 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361914,052,952 - 14,057,439 (-)NCBINCBI36Build 36hg18NCBI36
Celera1914,085,754 - 14,090,241 (-)NCBICelera
Cytogenetic Map19p13.12NCBI
HuRef1913,764,099 - 13,768,262 (-)NCBIHuRef
CHM1_11914,193,014 - 14,197,177 (-)NCBICHM1_1
T2T-CHM13v2.01914,207,916 - 14,212,075 (-)NCBIT2T-CHM13v2.0
C19h19orf67
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81941,051,577 - 41,054,875 (-)NCBIGRCr8
mRatBN7.21924,146,815 - 24,150,983 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1924,146,815 - 24,150,095 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01925,122,870 - 25,126,960 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1925,123,724 - 25,127,145 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01936,100,780 - 36,103,979 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41925,832,898 - 25,835,839 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1923,694,648 - 23,699,266 (-)NCBICelera
Cytogenetic Map19q11NCBI
CUNH19orf67
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541532,785,649 - 32,788,706 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541532,785,472 - 32,789,328 (-)NCBIChiLan1.0ChiLan1.0
C20H19orf67
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22019,013,748 - 19,017,951 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11918,015,415 - 18,020,865 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01913,646,905 - 13,651,425 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11914,374,098 - 14,378,137 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1914,374,098 - 14,378,134 (-)Ensemblpanpan1.1panPan2
C20H19orf67
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12048,431,736 - 48,435,274 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2048,432,244 - 48,435,273 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2048,306,586 - 48,310,955 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02048,949,871 - 48,954,194 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2048,949,670 - 48,952,956 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12048,161,041 - 48,165,383 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02048,587,607 - 48,591,946 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02048,830,424 - 48,834,765 (+)NCBIUU_Cfam_GSD_1.0
CUNH19orf67
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118207,611,022 - 207,614,129 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366592,740,728 - 2,743,490 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366592,740,595 - 2,743,490 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C2H19orf67
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl265,100,755 - 65,104,628 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1265,100,933 - 65,103,997 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2265,374,485 - 65,378,332 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CUNH19orf67
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1612,723,781 - 12,733,587 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl612,723,991 - 12,733,051 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660746,921,343 - 6,925,797 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH19orf67
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046249011,310,605 - 1,314,415 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046249011,310,671 - 1,314,361 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in 1700067K01Rik
249 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1278
Count of miRNA genes:517
Interacting mature miRNAs:586
Transcripts:ENSMUST00000060357, ENSMUST00000140120, ENSMUST00000172548, ENSMUST00000174570, ENSMUST00000174587
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10043992Hbnr11_mHeligmosomoides bakeri nematode resistance 11 (mouse)Not determined866326836100326976Mouse
1301013Capsq4_mcapsaicin sensitivity related QTL 4 (mouse)Not determined83663015493455280Mouse
12904012Cfq10_mconditioned fear QTL 10 (mouse)88079340489740987Mouse
11353828Gf7_mgonadal fat pad weight 7 (mouse)85892810792928107Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
1357787Vtbt5_mvertebral trabecular bone trait 5 (mouse)Not determined866084397100084549Mouse
1301506Aevm1_mautoimmune extremity vasculitis in MRL mice 1 (mouse)Not determined85474046188740637Mouse
1301952Im3_mimmunoregulatory 3 (mouse)Not determined85515925889159407Mouse
1301767Fcsa2_mfemoral cross-sectional area 2 (mouse)Not determined871032003105032123Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
4141285Tgq18_mtriglyceride QTL 18 (mouse)Not determined6418673698186736Mouse
4141797Skmw16_mskeletal muscle weight 16 (mouse)Not determined86466617698666325Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
10043975Obq31_mobesity QTL 31 (mouse)Not determined85913640493136404Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
10412287Carg3_mCandida albicans resistance gene 3 (mouse)Not determined85629887290298872Mouse
1301872Cd4ts3_mCD4 T cell subset 3 (mouse)Not determined872122809106123021Mouse
1301688Orch6_mautoimmune orchitis resistance 6 (mouse)Not determined86151347995513605Mouse
1558780Idd22_minsulin dependent diabetes susceptibility 22 (mouse)Not determined871829531105829637Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
4141395Char2a_mP. chabaudi malaria resistance QTL 2a (mouse)Not determined7158942790929226Mouse
12904744Carcdq1_mcardiac collagen deposition QTL 1 (mouse)84016229795416226Mouse
14700686Civq3_mcerebral infarct volume QTL 3 (mouse)85233484386334843Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
4142283Imraq2_mimmune response to AAV2 QTL 2 (mouse)Not determined871032003105032123Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse

Markers in Region
RH124985  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38883,999,833 - 84,000,153UniSTSGRCm38
MGSCv37886,523,732 - 86,524,052UniSTSGRCm37
Celera888,293,151 - 88,293,471UniSTS
Cytogenetic Map8C3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000060357   ⟹   ENSMUSP00000062468
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl884,728,131 - 84,731,399 (+)Ensembl
GRCm38.p6 Ensembl884,001,502 - 84,004,770 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140120
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl884,728,958 - 84,729,918 (+)Ensembl
GRCm38.p6 Ensembl884,002,329 - 84,003,289 (+)Ensembl
Ensembl Acc Id: ENSMUST00000174570   ⟹   ENSMUSP00000134486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl884,728,206 - 84,731,293 (+)Ensembl
GRCm38.p6 Ensembl884,001,577 - 84,004,664 (+)Ensembl
Ensembl Acc Id: ENSMUST00000239176   ⟹   ENSMUSP00000159263
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl884,728,206 - 84,731,299 (+)Ensembl
GRCm38.p6 Ensembl884,001,577 - 84,004,670 (+)Ensembl
RefSeq Acc Id: NM_183097   ⟹   NP_898920
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,728,092 - 84,731,398 (+)NCBI
GRCm38884,001,463 - 84,004,769 (+)NCBI
MGSCv37886,525,605 - 86,528,669 (+)RGD
Celera888,295,023 - 88,298,103 (+)RGD
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006531403   ⟹   XP_006531466
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39884,727,145 - 84,731,399 (+)NCBI
GRCm38884,000,516 - 84,004,770 (+)NCBI
Sequence:
RefSeq Acc Id: NP_898920   ⟸   NM_183097
- UniProtKB: Q8CF25 (UniProtKB/Swiss-Prot),   F6UZF9 (UniProtKB/Swiss-Prot),   A0A668KLB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006531466   ⟸   XM_006531403
- Peptide Label: isoform X1
- UniProtKB: Q8CF25 (UniProtKB/Swiss-Prot),   F6UZF9 (UniProtKB/Swiss-Prot),   A0A6E0D3Q4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000159263   ⟸   ENSMUST00000239176
Ensembl Acc Id: ENSMUSP00000134486   ⟸   ENSMUST00000174570
Ensembl Acc Id: ENSMUSP00000062468   ⟸   ENSMUST00000060357

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8CF25-F1-model_v2 AlphaFold Q8CF25 1-301 view protein structure

Promoters
RGD ID:6842485
Promoter ID:MM_KWN:55040
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day1,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_4Hour,   ES_Cell,   MEF_B6
Transcripts:ENSMUST00000060357,   NM_183097,   OTTMUST00000071647
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36886,524,701 - 86,526,822 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1920703 AgrOrtholog
Ensembl Genes ENSMUSG00000046408 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000060357 ENTREZGENE
  ENSMUST00000060357.15 UniProtKB/TrEMBL
  ENSMUST00000174570.9 UniProtKB/TrEMBL
  ENSMUST00000239176 ENTREZGENE
  ENSMUST00000239176.2 UniProtKB/TrEMBL
InterPro DUF3314 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:73453 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1920703 ENTREZGENE
NCBI Gene 73453 ENTREZGENE
PANTHER PTHR36292 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UPF0575 PROTEIN C19ORF67 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam DUF3314 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen 1700067K01Rik PhenoGen
UniProt A0A668KLB1 ENTREZGENE, UniProtKB/TrEMBL
  A0A6E0D3Q4 ENTREZGENE, UniProtKB/TrEMBL
  B2RVM9_MOUSE UniProtKB/TrEMBL
  B7ZWF8_MOUSE UniProtKB/TrEMBL
  CS067_MOUSE UniProtKB/Swiss-Prot
  F6UZF9 ENTREZGENE
  G3UZG4_MOUSE UniProtKB/TrEMBL
  Q8CF25 ENTREZGENE
UniProt Secondary F6UZF9 UniProtKB/Swiss-Prot