Gpa33 (glycoprotein A33 transmembrane) - Rat Genome Database

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Gene: Gpa33 (glycoprotein A33 transmembrane) Mus musculus
Analyze
Symbol: Gpa33
Name: glycoprotein A33 transmembrane
RGD ID: 1618387
MGI Page MGI
Description: Located in plasma membrane. Is expressed in several structures, including blastocyst; gut; sensory organ; skeleton; and urogenital sinus. Orthologous to human GPA33 (glycoprotein A33).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2010310L10Rik; 2210401D16Rik; A33 antigen; BB116197; cell surface A33 antigen; glycoprotein A33 (transmembrane); mA33
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,957,790 - 165,994,079 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1165,957,807 - 165,994,079 (+)EnsemblGRCm39 Ensembl
GRCm381166,130,221 - 166,166,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1166,130,238 - 166,166,510 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,060,591 - 168,096,641 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,967,135 - 168,003,185 (+)NCBIMGSCv36mm8
Celera1168,573,855 - 168,609,931 (+)NCBICelera
Cytogenetic Map1H2.3NCBI
cM Map173.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
plasma membrane  (IBA,IDA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:10960348   PMID:11042159   PMID:11044613   PMID:11076861   PMID:11217851   PMID:12114523   PMID:12351151   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12904583  
PMID:14610273   PMID:15489334   PMID:16141072   PMID:16141073   PMID:17967808   PMID:18799693   PMID:19856415   PMID:20531296   PMID:21267068   PMID:21677750   PMID:21873635   PMID:23064761  
PMID:26035389   PMID:26300002   PMID:26398937   PMID:38355793  


Genomics

Comparative Map Data
Gpa33
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391165,957,790 - 165,994,079 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1165,957,807 - 165,994,079 (+)EnsemblGRCm39 Ensembl
GRCm381166,130,221 - 166,166,510 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1166,130,238 - 166,166,510 (+)EnsemblGRCm38mm10GRCm38
MGSCv371168,060,591 - 168,096,641 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361167,967,135 - 168,003,185 (+)NCBIMGSCv36mm8
Celera1168,573,855 - 168,609,931 (+)NCBICelera
Cytogenetic Map1H2.3NCBI
cM Map173.49NCBI
GPA33
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381167,052,836 - 167,090,377 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1167,052,836 - 167,166,479 (-)EnsemblGRCh38hg38GRCh38
GRCh371167,022,073 - 167,059,614 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361165,288,706 - 165,326,492 (-)NCBINCBI36Build 36hg18NCBI36
Build 341163,753,739 - 163,791,526NCBI
Celera1140,127,216 - 140,164,992 (-)NCBICelera
Cytogenetic Map1q24.1NCBI
HuRef1138,268,969 - 138,306,291 (-)NCBIHuRef
CHM1_11168,443,791 - 168,482,342 (-)NCBICHM1_1
T2T-CHM13v2.01166,398,672 - 166,437,547 (-)NCBIT2T-CHM13v2.0
Gpa33
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81380,914,119 - 80,947,738 (+)NCBIGRCr8
mRatBN7.21378,381,141 - 78,414,765 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1378,381,141 - 78,414,765 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1380,998,111 - 81,033,883 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01382,302,583 - 82,338,338 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01379,550,433 - 79,586,107 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01384,334,598 - 84,368,154 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1384,334,598 - 84,368,154 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01389,212,323 - 89,245,475 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41381,858,333 - 81,892,579 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11381,872,514 - 81,906,767 (+)NCBI
Celera1378,091,717 - 78,124,683 (+)NCBICelera
Cytogenetic Map13q23NCBI
Gpa33
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_0049554629,840,188 - 9,869,938 (+)NCBIChiLan1.0ChiLan1.0
GPA33
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2182,701,392 - 82,723,572 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1182,369,779 - 82,391,975 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01142,473,352 - 142,512,364 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11146,259,431 - 146,298,105 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1146,259,431 - 146,298,105 (-)Ensemblpanpan1.1panPan2
GPA33
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1731,277,223 - 31,324,264 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl731,272,250 - 31,322,647 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha730,816,076 - 30,863,107 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0731,098,671 - 31,145,755 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl731,098,463 - 31,144,582 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1730,937,142 - 30,984,160 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0730,968,972 - 31,016,032 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0731,207,479 - 31,254,540 (+)NCBIUU_Cfam_GSD_1.0
Gpa33
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024409344101,006,407 - 101,033,696 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648118,853,301 - 18,880,391 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648118,866,637 - 18,880,391 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GPA33
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl483,904,915 - 83,941,563 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1483,904,651 - 83,943,238 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2491,579,032 - 91,642,186 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GPA33
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12561,944,882 - 61,983,695 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2561,945,340 - 61,985,078 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605563,698,214 - 63,720,635 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gpa33
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248265,152,114 - 5,183,403 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1377
Count of miRNA genes:531
Interacting mature miRNAs:625
Transcripts:ENSMUST00000027847, ENSMUST00000060833, ENSMUST00000166159, ENSMUST00000166860
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301523Ccrs1_mcorpus callosum hemisphere surface size 1 (mouse)Not determined1139602037173602216Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
12790987Tgl5_mtriglyceride 5 (mouse)1160097157194097157Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
12790984Pcho7_mplasma cholesterol 7 (mouse)1147219390181219390Mouse
12790988Phdlc5_mplasma HDL cholesterol 5 (mouse)9160097157194097157Mouse
1300740Tne1_mtotal number errors (mouse)Not determined1139602037173602216Mouse
12790996Aath2_maortic arch atherosclerosis 2 (mouse)1145077630179077630Mouse
12791001Aath6_maortic arch atherosclerosis 6 (mouse)1147219390181219390Mouse
1300745Gvhd1_mgraft-versus-host disease 1 (mouse)Not determined1157456299191456436Mouse
10412162Nobq3_mNew Zealand obese QTL 3 (mouse)Not determined1103933405191225397Mouse
4141346Skmw12_mskeletal muscle weight 12 (mouse)Not determined150756737184756922Mouse
1357618Splq5_mspleen weight QTL 5 (mouse)Not determined1150193673188359312Mouse
1301301Sle1_msystemic lupus erythmatosus susceptibility 1 (mouse)Not determined1152038741186038913Mouse
1301818Ap1q_malcohol preference 1 QTL (mouse)Not determined1146908199167586222Mouse
12904936Edlmmq1_mextensor digitorum longus muscle mass QTL 1 (mouse)1155002940189002940Mouse
1301565Mnotch_mmodifier of Notch (mouse)Not determined1157456299191456436Mouse
1301309Emo1_memotionality 1 (mouse)Not determined1162977097185994196Mouse
1301025Lbw7_mlupus NZB x NZW 7 (mouse)Not determined1152038741186038913Mouse
12904944Tammq1_mtibialis anterior muscle mass QTL 1 (mouse)1155002940189002940Mouse
1357602Vtbt2_mvertebral trabecular bone trait 2 (mouse)Not determined1139602037173602216Mouse
12904957Gmmq1_mgastrocnemius muscle mass QTL 1 (mouse)1155002940189002940Mouse
1300777Chol10_mcholesterol 10 (mouse)Not determined9147875502181875616Mouse
1302098Eila1_methanol induced locomotor activity 1 (mouse)Not determined1112008822175468938Mouse
1300823Ath9_matherosclerosis 9 (mouse)Not determined1160112768194112883Mouse
1300571Opfa_mopen field activity (mouse)Not determined1144531347178531592Mouse
1301339Hdlq15_mHDL QTL 15 (mouse)Not determined1165873675195154279Mouse
1301596Elnt_mescape latencies during navigation task (mouse)Not determined1162145207194111528Mouse
4141165Bglu3_mblood glucose level 3 (mouse)Not determined155831765189831892Mouse
1357889Lprq3_mlipoprotein QTL 3 (mouse)Not determined1152038741186038913Mouse
4141160Cq1_mcholesterol QTL 1 (mouse)Not determined1139452188173452308Mouse
4142182Shali5_msurvival time to hyperoxic acute lung injury 5 (mouse)Not determined155582237185994196Mouse
10402498Lmr20_mleishmaniasis resistance 20 (mouse)Not determined1158468817192468938Mouse
1301619Cafq1_mcaffeine metabolism QTL 1 (mouse)Not determined1155716221189716369Mouse
4141149Hbnr4_mHeligmosomoides bakeri nematode resistance 4 (mouse)Not determined147125258188983224Mouse
10043899Hdlq99_mHDL QTL 99 (mouse)Not determined1147875502181875616Mouse
11537365Cnes4_mC. neoformans susceptibility locus 4 (mouse)1144449142178449142Mouse
11081167Tir8_mtrypanosome infection response 8 (mouse)1155716221189716369Mouse
1302132Pbw1_mpentobarbital withdrawal QTL 1 (mouse)Not determined1155831765189831892Mouse
1357434Obsty1_mobesity 1 (mouse)Not determined1136209950170210094Mouse
4142159Nba2_mNew Zealand Black autoimmunity 2 (mouse)Not determined151835111185835280Mouse
1301602Bslm4_mbasal locomotor activity 4 (mouse)Not determined1157456299191456436Mouse
1301866Cplaq3_mcircadian period of locomotor activity 3 (mouse)Not determined1155721528189722608Mouse
1300842Sle9_msystematic lupus erythematosus susceptibility 9 (mouse)Not determined1158468817192468938Mouse
4142149Ctex_mCtla4 expression QTL (mouse)Not determined1153557406175468938Mouse
1301614Cgnz1_mchronic glomerulonephritis in NZM 1 (mouse)Not determined1152038741186038913Mouse
12910521Scgq1_mspontaneous crescentic glomerulonephritis QTL 1 (mouse)1156602037176262693Mouse
12910522Scgq2_mspontaneous crescentic glomerulonephritis QTL 2 (mouse)1147125258171632257Mouse
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
4142014Wbcq5_mwhite blood cell quantitative locus 5 (mouse)Not determined1141095010175095156Mouse
4141245Cq2_mcholesterol QTL 2 (mouse)Not determined1157456299191456436Mouse
4141244Bmd5c_mbone mineral density 5c (mouse)Not determined155526796189526897Mouse
14746980Manh50_mmandible shape 50 (mouse)1134131564168131564Mouse
13464138Hdlq107_mHDL QTL 107 (mouse)1152132744186132744Mouse
1300888Berr1_mberghei resistance locus 1 (mouse)Not determined1164143227190534272Mouse
1301151Hdlq14_mHDL QTL 14 (mouse)Not determined1142489543176489734Mouse
1301149Lrnx12_mlearning-contextual 12 (mouse)Not determined1112008822168186402Mouse
4141233Femwf12_mfemur work to failure 12 (mouse)Not determined141233173175233272Mouse
1301122Cd8mts1_mCD8 T memory cell subset 1 (mouse)Not determined1155831765189831892Mouse
1301632Bw8q1_mbody weight at 8 weeks QTL 1 (mouse)Not determined1161201261195154279Mouse
1301894Skull2_mskull morphology 2 (mouse)Not determined1139602037173602216Mouse
1301385Radpf2_mradiation pulmonary fibrosis 2 (mouse)Not determined1147125258182873798Mouse
1301134Bmd1_mbone mineral density 1 (mouse)Not determined1156602037189303617Mouse
13452397Leusq4_mleucocytosis susceptibility QTL 4 (mouse)1156602037170803640Mouse
1357493Lgaq3_mlate growth adjusted QTL 3 (mouse)Not determined1150193673188359312Mouse
11251722Ewc1_methanol withdrawal and consumption 1 (mouse)1152132744186132744Mouse
1302193Cpfd1_mcerebellum pattern fissures (mouse)Not determined1139602037173602216Mouse
10043963Obq25_mobesity QTL 25 (mouse)Not determined1154410512188410512Mouse
13452393Ity3b_mimmunity to S. typhimurium 3b (mouse)1156497439172097436Mouse
1301431Pcho1_mplasma cholesterol 1 (mouse)Not determined1159262573193262693Mouse
13452394Leusq1_mleucocytosis susceptibility QTL 1 (mouse)1156602037168186402Mouse
1301408Lore8_mloss of righting induced by ethanol 8 (mouse)Not determined1135877901169878015Mouse
10412074Nhdlt1_mnon-HDL cholesterol and triglyceride levels 1 (mouse)Not determined1153675990187676105Mouse
1357485Lgq4_mlate growth QTL 4 (mouse)Not determined1150193673188359312Mouse
1301932Ssta2_msusceptibility to Salmonella typhimurium antigens 2 (mouse)Not determined1155716221189716369Mouse
27095901Scvln8_msacral vertebrae length 2, 10 week (mouse)194127725172027567Mouse
11049576Lmr8a_mleishmaniasis resistance 8a (mouse)1139602037173602216Mouse
1301458Skts8_mskin tumor susceptibility 8 (mouse)Not determined1135794822169795012Mouse
1301202Yaa4_mY-linked autoimmune acceleration 4 (mouse)Not determined1158468817192468938Mouse
10054490Opefa_mopen field activity (mouse)Not determined1153712853187712853Mouse
1300948Fglu2_mfasting glucose 2 (mouse)Not determined1157456299191456436Mouse
1301467Pcir1_mperiosteal circumference 1 (mouse)Not determined1141233173175233272Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
1300696Bpq2_mblood pressure QTL 2 (mouse)Not determined1139602037173602216Mouse
11059556Lmr20b_mleishmaniasis resistance 20b (mouse)1158468817192468938Mouse
4141554Cfmq1_mcystic fibrosis modifier QTL 1 (mouse)Not determined1152038741186038913Mouse
11059557Lmr20a_mleishmaniasis resistance 20a (mouse)1158468817192468938Mouse
11059558Lmr20c_mleishmaniasis resistance 20c (mouse)1158468817192468938Mouse
1301191Stia1_mserum transfer induced arthritis 1 (mouse)Not determined1141233173175233272Mouse
1300934Cfbw1_mcystic fibrosis body weight 1 (mouse)Not determined1145145207179145325Mouse
1301189Lmr8_mleishmaniasis resistance 8 (mouse)Not determined1156602037189303617Mouse
1558720Bpq8_mblood pressure QTL 8 (mouse)Not determined1143284665177284803Mouse
10766456Sle21_msystematic lupus erythematosus susceptibility 21 (mouse)1155831765189831892Mouse
1301710Bmd5_mbone mineral density 5 (mouse)Not determined1139602037173602216Mouse
27095935Ulnl5_mulna length 5, 10 week (mouse)1128727737181327565Mouse
1301232Hcs7_mhepatocarcinogenesis susceptibility 7 (mouse)Not determined1156602037168186402Mouse
10054271Nba9_mNew Zealand Black autoimmunity 9 (mouse)Not determined1155525623189527533Mouse
10054270Nba10_mNew Zealand Black autoimmunity 10 (mouse)Not determined1152794822186438620Mouse
1357567Nidd3k_mNidd3 on KK-A<y> (mouse)Not determined7147125258169038913Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1300732Melm2_mmelanoma modifier 2 (mouse)Not determined1157456299191456436Mouse
1301216Cbm1_mcerebellum weight 1 (mouse)Not determined1157456299191456436Mouse
27095915Scvln13_msacral vertebrae length 2, 16 week (mouse)1117527730179827565Mouse
11533913Rd6m1_mretinal degeneration 6 modifier 1 (mouse)1141233173175233272Mouse
26884448Sklq1_mskull length QTL 1, 5 week (mouse)175976637181327565Mouse
1300969Sluc5_msusceptibility to lung cancer 5 (mouse)Not determined1151186243185186402Mouse

Markers in Region
BB116197  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381166,166,295 - 166,166,420UniSTSGRCm38
MGSCv371168,096,426 - 168,096,551UniSTSGRCm37
Celera1168,609,716 - 168,609,841UniSTS
Cytogenetic Map1H2.3UniSTS
Whitehead/MRC_RH12102.75UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000027847
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1165,957,986 - 165,981,705 (+)Ensembl
GRCm38.p6 Ensembl1166,130,417 - 166,154,136 (+)Ensembl
Ensembl Acc Id: ENSMUST00000060833   ⟹   ENSMUSP00000060147
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1165,957,807 - 165,994,079 (+)Ensembl
GRCm38.p6 Ensembl1166,130,238 - 166,166,510 (+)Ensembl
Ensembl Acc Id: ENSMUST00000166159   ⟹   ENSMUSP00000132753
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1165,957,909 - 165,985,098 (+)Ensembl
GRCm38.p6 Ensembl1166,130,340 - 166,157,529 (+)Ensembl
Ensembl Acc Id: ENSMUST00000166860   ⟹   ENSMUSP00000125903
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1165,958,036 - 165,994,078 (+)Ensembl
GRCm38.p6 Ensembl1166,130,467 - 166,166,509 (+)Ensembl
RefSeq Acc Id: NM_001360925   ⟹   NP_001347854
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,957,790 - 165,994,079 (+)NCBI
GRCm381166,130,221 - 166,166,510 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001360926   ⟹   NP_001347855
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,957,790 - 165,981,705 (+)NCBI
GRCm381166,130,221 - 166,154,136 (+)NCBI
Sequence:
RefSeq Acc Id: NM_021610   ⟹   NP_067623
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391165,957,790 - 165,994,079 (+)NCBI
GRCm381166,130,221 - 166,166,510 (+)NCBI
MGSCv371168,060,591 - 168,096,641 (+)RGD
Celera1168,573,855 - 168,609,931 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_067623   ⟸   NM_021610
- Peptide Label: isoform 1 precursor
- UniProtKB: Q922D5 (UniProtKB/Swiss-Prot),   Q9JKA5 (UniProtKB/Swiss-Prot),   A0A0R4J209 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001347854   ⟸   NM_001360925
- Peptide Label: isoform 2
RefSeq Acc Id: NP_001347855   ⟸   NM_001360926
- Peptide Label: isoform 3 precursor
- UniProtKB: Q9D7V7 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSMUSP00000132753   ⟸   ENSMUST00000166159
Ensembl Acc Id: ENSMUSP00000125903   ⟸   ENSMUST00000166860
Ensembl Acc Id: ENSMUSP00000060147   ⟸   ENSMUST00000060833
Protein Domains
Ig-like   Ig-like C2-type   Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JKA5-F1-model_v2 AlphaFold Q9JKA5 1-319 view protein structure

Promoters
RGD ID:6875562
Promoter ID:EPDNEW_M1232
Type:initiation region
Name:Gpa33_1
Description:Mus musculus glycoprotein A33 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381166,130,448 - 166,130,508EPDNEW
RGD ID:6817853
Promoter ID:MM_KWN:2729
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell
Transcripts:NM_021610,   OTTMUST00000041022
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361168,060,291 - 168,060,791 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1891703 AgrOrtholog
Ensembl Genes ENSMUSG00000000544 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027847 ENTREZGENE
  ENSMUST00000060833 ENTREZGENE
  ENSMUST00000060833.14 UniProtKB/TrEMBL
  ENSMUST00000166159.2 UniProtKB/TrEMBL
  ENSMUST00000166860.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro A33 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Immunoglobulin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:59290 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:1891703 ENTREZGENE
NCBI Gene 59290 ENTREZGENE
PANTHER CELL SURFACE A33 ANTIGEN UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR44969 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam PF00047 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Gpa33 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGv UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0R4J209 ENTREZGENE, UniProtKB/TrEMBL
  E9PY15_MOUSE UniProtKB/TrEMBL
  GPA33_MOUSE UniProtKB/Swiss-Prot
  Q922D5 ENTREZGENE
  Q9D7V7 ENTREZGENE, UniProtKB/TrEMBL
  Q9JKA5 ENTREZGENE
UniProt Secondary Q922D5 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-07-11 Gpa33  glycoprotein A33 transmembrane  Gpa33  glycoprotein A33 (transmembrane)  Symbol and/or name change 5135510 APPROVED