Slc4a5 (solute carrier family 4, sodium bicarbonate cotransporter, member 5) - Rat Genome Database

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Gene: Slc4a5 (solute carrier family 4, sodium bicarbonate cotransporter, member 5) Mus musculus
Analyze
Symbol: Slc4a5
Name: solute carrier family 4, sodium bicarbonate cotransporter, member 5
RGD ID: 1618147
MGI Page MGI
Description: Enables sodium:bicarbonate symporter activity. Acts upstream of or within several processes, including cerebrospinal fluid secretion; mitochondrion distribution; and retina development in camera-type eye. Predicted to be located in apical plasma membrane and basolateral plasma membrane. Predicted to be active in plasma membrane. Is expressed in several structures, including nervous system; retina; and thyroid gland. Orthologous to human SLC4A5 (solute carrier family 4 member 5).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C330006M16; C330016K18Rik; electrogenic sodium bicarbonate cotransporter 4; solute carrier family 4 member 5
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,184,561 - 83,281,927 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,196,810 - 83,281,927 (+)EnsemblGRCm39 Ensembl
GRCm38683,207,580 - 83,304,945 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,219,828 - 83,304,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,187,369 - 83,254,939 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,171,116 - 83,269,155 (+)NCBIMGSCv36mm8
Celera685,218,567 - 85,286,029 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11812828   PMID:12466851   PMID:14610273   PMID:14681479   PMID:16141072   PMID:16141073   PMID:18448421  
PMID:18588858   PMID:21052544   PMID:21267068   PMID:21677750   PMID:21705333   PMID:21873635   PMID:22082831   PMID:23341629   PMID:25941340   PMID:26109087   PMID:26110920   PMID:29956324  
PMID:32547422   PMID:33304758   PMID:33500475   PMID:35216333  


Genomics

Comparative Map Data
Slc4a5
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39683,184,561 - 83,281,927 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl683,196,810 - 83,281,927 (+)EnsemblGRCm39 Ensembl
GRCm38683,207,580 - 83,304,945 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl683,219,828 - 83,304,945 (+)EnsemblGRCm38mm10GRCm38
MGSCv37683,187,369 - 83,254,939 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36683,171,116 - 83,269,155 (+)NCBIMGSCv36mm8
Celera685,218,567 - 85,286,029 (+)NCBICelera
Cytogenetic Map6C3NCBI
cM Map635.94NCBI
SLC4A5
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38274,216,242 - 74,343,416 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl274,216,242 - 74,343,416 (-)EnsemblGRCh38hg38GRCh38
GRCh37274,443,369 - 74,570,543 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36274,296,877 - 74,424,042 (-)NCBINCBI36Build 36hg18NCBI36
Build 34274,360,215 - 74,481,317NCBI
Celera274,274,548 - 74,401,724 (-)NCBICelera
Cytogenetic Map2p13.1NCBI
HuRef274,179,673 - 74,306,847 (-)NCBIHuRef
CHM1_1274,372,727 - 74,499,962 (-)NCBICHM1_1
T2T-CHM13v2.0274,224,993 - 74,351,975 (-)NCBIT2T-CHM13v2.0
Slc4a5
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84117,267,803 - 117,368,024 (+)NCBIGRCr8
mRatBN7.24115,710,101 - 115,810,330 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4115,725,592 - 115,810,323 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4121,202,308 - 121,287,313 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04116,977,485 - 117,062,485 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04115,591,931 - 115,676,855 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04114,918,488 - 115,002,290 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4114,918,488 - 115,002,300 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04179,507,406 - 179,590,656 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44117,432,385 - 117,515,453 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.14117,676,865 - 117,759,934 (+)NCBI
Celera4104,719,746 - 104,803,062 (+)NCBICelera
Cytogenetic Map4q34NCBI
Slc4a5
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495542411,449,819 - 11,535,379 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495542411,426,020 - 11,537,141 (+)NCBIChiLan1.0ChiLan1.0
SLC4A5
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21252,051,754 - 52,171,182 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A52,054,507 - 52,173,935 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A74,288,481 - 74,428,014 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A75,795,839 - 75,915,842 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A75,798,510 - 75,888,448 (-)Ensemblpanpan1.1panPan2
SLC4A5
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11748,769,963 - 48,882,201 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1748,797,807 - 48,880,441 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1748,415,721 - 48,523,894 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01749,633,737 - 49,741,999 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1749,646,207 - 49,741,175 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11748,650,512 - 48,758,615 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01748,716,975 - 48,825,438 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01749,275,214 - 49,383,455 (+)NCBIUU_Cfam_GSD_1.0
Slc4a5
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629210,146,778 - 10,262,042 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936556475,394 - 577,168 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936556475,856 - 577,160 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SLC4A5
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl368,692,693 - 68,819,293 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1368,733,379 - 68,819,293 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2371,905,020 - 71,977,516 (+)NCBISscrofa10.2Sscrofa10.2susScr3
SLC4A5
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11432,923,507 - 33,060,085 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604579,103,896 - 79,251,010 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Slc4a5
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474929,146,873 - 29,266,050 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474929,148,666 - 29,264,193 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Slc4a5
3319 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:2292
Count of miRNA genes:706
Interacting mature miRNAs:901
Transcripts:ENSMUST00000039212, ENSMUST00000113899, ENSMUST00000113900, ENSMUST00000122897, ENSMUST00000130781, ENSMUST00000131432, ENSMUST00000141863
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
25440480Moaq2_mmodifier of alien QTL 2 (mouse)63050001117476961Mouse
26884414Bzwq12_mbi-zygomatic width QTL 12, 16 week (mouse)63400000139076998Mouse
1300556Cia6_mcollagen induced arthritis QTL 6 (mouse)Not determined6446488487403016Mouse
4142271Egq8_mearly growth QTL 8 (mouse)Not determined450382396633110Mouse
4142232W6q4_mweight 6 weeks QTL 4 (mouse)Not determined450382396633110Mouse
4142126W3q3_mweight 3 weeks QTL 3 (mouse)Not determined450382396633110Mouse
4142361W10q11_mweight 10 weeks QTL 11 (mouse)Not determined450382396633110Mouse
1558984Cplaq9_mcircadian period of locomotor activity 9 (mouse)Not determined63864656092584431Mouse
1300618Pgia19_mproteoglycan induced arthritis 19 (mouse)Not determined64529099387403016Mouse
10412157Fl1n_mfatty liver 1 in NSY (mouse)Not determined645290993128811995Mouse
4142259Tabw2_mtally ho associated body weight 2 (mouse)Not determined46912919136400690Mouse
25314319Histh6_mhistamine hypersensitivity 6 (mouse)648696934125336963Mouse
25314320Histh5_mhistamine hypersensitivity 5 (mouse)648696934148351498Mouse
1301962Eila2_methanol induced locomotor activity 2 (mouse)Not determined648703490125333748Mouse
1301254Skts11_mskin tumor susceptibility 11 (mouse)Not determined65115613485156284Mouse
1357683Igf1sl1_mIGF-1 serum levels 1 (mouse)Not determined652138693116132228Mouse
4141028Mclr_mmethylcholanthrene lymphoma resistance (mouse)Not determined5435041188356155Mouse
15039373Adip28_madiposity 28 (mouse)65628519490285194Mouse
15039375Bw41_mbody weight QTL 41 (mouse)65628519490285194Mouse
1558977Skmw10_mskeletal muscle weight 10 (mouse)Not determined65842456692424693Mouse
10043972Obq28_mobesity QTL 28 (mouse)Not determined65851741692517416Mouse
10412119Stv_mstriatal volumne (mouse)Not determined660026991100026967Mouse
1301740Bwq2_mbody weight QTL 2 (mouse)Not determined66003466394034782Mouse
1301369Im4_mimmunoregulatory 4 (mouse)Not determined66346172197461888Mouse
1300650Bw18_mbody weight QTL 18 (mouse)Not determined666690851100691013Mouse
1301813Skl3_mskeletal size (tail length) 3 (mouse)Not determined670402880104403016Mouse
1301034Egrm2_mearly growth rate (mouse)Not determined670402880104403016Mouse
1301876Bits2_mbitterness sensitivity 2 (mouse)Not determined670402880104403016Mouse
4141990Etax6_methanol induced ataxia 6 (mouse)Not determined7129960586252701Mouse
1302020Bbaa20_mB.burgdorferi-associated arthritis 20 (mouse)Not determined67129960593441074Mouse
1300869Stheal5_msoft tissue heal 5 (mouse)Not determined671552042105552160Mouse
1301521Pas1c_mpulmonary adenoma susceptibility 1c (mouse)Not determined671958006105958152Mouse
1300954Fcsa1_mfemoral cross-sectional area 1 (mouse)Not determined671958006105958152Mouse
13506930Recrq9_mrecombination rate in male meiosis QTL 9 (mouse)673476983134676963Mouse
12792979Fbmd2_mfemoral bone mineral density 2, females only (mouse)675026989115026943Mouse
1301320Ots1_movarian teratoma susceptibility 1 (mouse)Not determined675424566104480516Mouse
1301571Arrd1_mage-related retinal degeneration 1 (mouse)Not determined67552133992584431Mouse
10412195Efw_mepididymal fat weight (mouse)Not determined67552133994202936Mouse
1300674Nidd3n_mnon-insulin-dependent diabetes mellitus 3 in NSY (mouse)Not determined67552133994202936Mouse
10043901Pfat5_mpredicted fat percentage 5 (mouse)Not determined675584287109584431Mouse
10412208Cypr4_mcytokine production 4 (mouse)Not determined675693484109693678Mouse
1357875Pfat2_mpredicted fat percentage 2 (mouse)Not determined676440930110441074Mouse
14697704Stsl4_mSalmonella typhimurium susceptibility locus 4 (mouse)67707698389976982Mouse
13824985Alh1_mamplitude of lateral head displacement 1 (mouse)67797698396976961Mouse
4141376Dbm1_mdiabetes modifier 1 (mouse)Not determined678606487121092347Mouse
14696731Pairq1_mP. aeruginosa infection resistance QTL 1 (mouse)681476981102176961Mouse

Markers in Region
45.MMHAP68FLG6.seq  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,236,159 - 83,236,350UniSTSGRCm38
MGSCv37683,186,153 - 83,186,344UniSTSGRCm37
Celera685,217,351 - 85,217,542UniSTS
Cytogenetic Map6C3UniSTS
Whitehead_YAC6 UniSTS
D6Mit211  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,248,935 - 83,249,081UniSTSGRCm38
MGSCv37683,198,929 - 83,199,075UniSTSGRCm37
Celera685,230,145 - 85,230,285UniSTS
Cytogenetic Map6C3UniSTS
cM Map634.97UniSTS
Whitehead Genetic624.0UniSTS
D6Mit211.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,249,097 - 83,249,206UniSTSGRCm38
MGSCv37683,199,091 - 83,199,200UniSTSGRCm37
Celera685,230,301 - 85,230,410UniSTS
Cytogenetic Map6C3UniSTS
cM Map634.97UniSTS
cM Map6 UniSTS
Whitehead_YAC6 UniSTS
D6Mit360  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,250,612 - 83,250,733UniSTSGRCm38
MGSCv37683,200,606 - 83,200,727UniSTSGRCm37
Celera685,231,816 - 85,231,937UniSTS
Cytogenetic Map6C3UniSTS
cM Map634.3UniSTS
Whitehead Genetic624.0UniSTS
D6Mit360.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38683,250,477 - 83,250,612UniSTSGRCm38
MGSCv37683,200,471 - 83,200,606UniSTSGRCm37
Celera685,231,681 - 85,231,816UniSTS
Cytogenetic Map6C3UniSTS
cM Map634.3UniSTS
cM Map6 UniSTS
Whitehead_YAC6 UniSTS
Slc4a5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6C3UniSTS
cM Map635.94UniSTS
Slc4a5  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6C3UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001166067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505964 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505965 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505966 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006505967 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC159713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC160400 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049248 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BB398090 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ175480 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY732178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CA526642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CF725373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK626530 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK626745 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO424019 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO428205 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO431509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX562762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSMUST00000039212   ⟹   ENSMUSP00000041007
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,214,357 - 83,281,926 (+)Ensembl
GRCm38.p6 Ensembl683,237,375 - 83,304,944 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113899   ⟹   ENSMUSP00000109532
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,214,357 - 83,281,927 (+)Ensembl
GRCm38.p6 Ensembl683,237,375 - 83,304,945 (+)Ensembl
RefSeq Acc Id: ENSMUST00000113900   ⟹   ENSMUSP00000109533
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,196,810 - 83,280,458 (+)Ensembl
GRCm38.p6 Ensembl683,219,828 - 83,303,476 (+)Ensembl
RefSeq Acc Id: ENSMUST00000122897
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,214,172 - 83,238,435 (+)Ensembl
GRCm38.p6 Ensembl683,237,190 - 83,261,453 (+)Ensembl
RefSeq Acc Id: ENSMUST00000131432
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,264,617 - 83,273,727 (+)Ensembl
GRCm38.p6 Ensembl683,287,635 - 83,296,745 (+)Ensembl
RefSeq Acc Id: ENSMUST00000141863
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl683,254,375 - 83,265,433 (+)Ensembl
GRCm38.p6 Ensembl683,277,393 - 83,288,451 (+)Ensembl
RefSeq Acc Id: NM_001166067   ⟹   NP_001159539
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,214,357 - 83,281,927 (+)NCBI
GRCm38683,237,375 - 83,304,945 (+)NCBI
MGSCv37683,187,369 - 83,254,939 (+)RGD
Celera685,218,567 - 85,286,029 (+)RGD
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006505963   ⟹   XP_006506026
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,196,806 - 83,281,927 (+)NCBI
GRCm38683,219,823 - 83,304,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505964   ⟹   XP_006506027
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,184,561 - 83,281,927 (+)NCBI
GRCm38683,207,580 - 83,304,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505965   ⟹   XP_006506028
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,184,561 - 83,281,927 (+)NCBI
GRCm38683,207,580 - 83,304,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505966   ⟹   XP_006506029
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,214,348 - 83,281,927 (+)NCBI
GRCm38683,237,366 - 83,304,945 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006505967   ⟹   XP_006506030
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39683,184,561 - 83,281,927 (+)NCBI
GRCm38683,207,580 - 83,304,945 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001159539   ⟸   NM_001166067
- UniProtKB: D3YVG0 (UniProtKB/TrEMBL),   D3YX36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006506030   ⟸   XM_006505967
- Peptide Label: isoform X5
- UniProtKB: E9Q3M5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506027   ⟸   XM_006505964
- Peptide Label: isoform X2
- UniProtKB: E9Q3M5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506028   ⟸   XM_006505965
- Peptide Label: isoform X3
- UniProtKB: E9Q3M5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506026   ⟸   XM_006505963
- Peptide Label: isoform X1
- UniProtKB: E9Q3M5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006506029   ⟸   XM_006505966
- Peptide Label: isoform X4
- UniProtKB: E9Q3M5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000109532   ⟸   ENSMUST00000113899
RefSeq Acc Id: ENSMUSP00000109533   ⟸   ENSMUST00000113900
RefSeq Acc Id: ENSMUSP00000041007   ⟸   ENSMUST00000039212
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-E9Q3M5-F1-model_v2 AlphaFold E9Q3M5 1-1116 view protein structure

Promoters
RGD ID:6838880
Promoter ID:MM_KWN:46596
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lung
Transcripts:OTTMUST00000054188,   UC009CND.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36683,227,391 - 83,227,891 (+)MPROMDB
RGD ID:6890152
Promoter ID:EPDNEW_M8527
Type:initiation region
Name:Slc4a5_2
Description:Mus musculus solute carrier family 4, sodium bicarbonate cotransporter,member 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8528  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,237,569 - 83,237,629EPDNEW
RGD ID:6890154
Promoter ID:EPDNEW_M8528
Type:initiation region
Name:Slc4a5_1
Description:Mus musculus solute carrier family 4, sodium bicarbonate cotransporter,member 5 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M8527  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38683,277,393 - 83,277,453EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2443220 AgrOrtholog
Ensembl Genes ENSMUSG00000068323 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000039212 ENTREZGENE
  ENSMUST00000039212.8 UniProtKB/TrEMBL
  ENSMUST00000113899.8 UniProtKB/TrEMBL
  ENSMUST00000113900 ENTREZGENE
  ENSMUST00000113900.8 UniProtKB/Swiss-Prot
Gene3D-CATH Helical hairpin bin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Band3_cytoplasmic_dom UniProtKB/Swiss-Prot
  HCO3_transpt-like_TM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_cyt UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Na/HCO3_transpt UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTrfase/Anion_transptr UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:232156 UniProtKB/TrEMBL
MGD MGI:2443220 ENTREZGENE
NCBI Gene 232156 ENTREZGENE
PANTHER ELECTROGENIC SODIUM BICARBONATE COTRANSPORTER 4 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_transpt_euk UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
Pfam Band_3_cyto UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  HCO3_cotransp UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Slc4a5 PhenoGen
PRINTS HCO3TRNSPORT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  NAHCO3TRSPRT UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP PTrfase/Anion_transptr UniProtKB/TrEMBL, UniProtKB/Swiss-Prot
UniProt D3YVG0 ENTREZGENE, UniProtKB/TrEMBL
  D3YX36 ENTREZGENE, UniProtKB/TrEMBL
  E9Q3M5 ENTREZGENE
  Q8BX31_MOUSE UniProtKB/TrEMBL
  S4A5_MOUSE UniProtKB/Swiss-Prot