Cd79a (CD79A antigen (immunoglobulin-associated alpha)) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models   new Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Cd79a (CD79A antigen (immunoglobulin-associated alpha)) Mus musculus
Analyze
Symbol: Cd79a
Name: CD79A antigen (immunoglobulin-associated alpha)
RGD ID: 1617637
MGI Page MGI
Description: Enables transmembrane signaling receptor activity. Involved in B cell differentiation; B cell proliferation; and B cell receptor signaling pathway. Located in external side of plasma membrane; membrane raft; and multivesicular body. Part of B cell receptor complex. Is expressed in liver. Human ortholog(s) of this gene implicated in agammaglobulinemia 3. Orthologous to human CD79A (CD79a molecule).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: B-cell antigen receptor complex-associated protein alpha chain; Cd79; I; Ig; Ig alpha; Ig-; Ig-alpha; Iga; Igalpha; immunoglobulin-associated alpha; Ly-5; Ly-54; Ly5; Ly54; mb-1; MB-1 membrane glycoprotein; membrane-bound immunoglobulin-associated protein; surface IgM-associated protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: Gm32220  
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,596,922 - 24,601,283 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,596,806 - 24,601,622 (+)EnsemblGRCm39 Ensembl
GRCm38724,897,497 - 24,901,858 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl724,897,381 - 24,902,197 (+)EnsemblGRCm38mm10GRCm38
MGSCv37725,682,530 - 25,687,216 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,606,271 - 24,610,957 (+)NCBIMGSCv36mm8
Celera719,513,406 - 19,518,092 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.49NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
abnormal B cell activation  (IAGP)
abnormal B cell anergy  (IAGP)
abnormal B cell calcium ion homeostasis  (IAGP)
abnormal B cell differentiation  (IAGP)
abnormal B cell morphology  (IAGP)
abnormal B cell negative selection  (IAGP)
abnormal B cell number  (IAGP)
abnormal B cell physiology  (IAGP)
abnormal B cell proliferation  (IAGP)
abnormal B cell receptor editing  (IAGP)
abnormal B-1 B cell morphology  (IAGP)
abnormal bone marrow cell physiology  (IAGP)
abnormal calcium ion homeostasis  (IAGP)
abnormal cell cycle  (IAGP)
abnormal circulating chemokine level  (IAGP)
abnormal class switch recombination  (IAGP)
abnormal cytokine level  (IAGP)
abnormal enzyme/coenzyme activity  (IAGP)
abnormal follicular B cell physiology  (IAGP)
abnormal humoral immune response  (IAGP)
abnormal immune system cell morphology  (IAGP)
abnormal immune system physiology  (IAGP)
abnormal immunoglobulin heavy chain V(D)J recombination  (IAGP)
abnormal immunoglobulin level  (IAGP)
abnormal immunoglobulin V(D)J recombination  (IAGP)
abnormal lymphocyte cell number  (IAGP)
abnormal marginal zone B cell physiology  (IAGP)
abnormal memory B cell morphology  (IAGP)
abnormal memory B cell physiology  (IAGP)
abnormal metallophilic macrophage morphology  (IAGP)
abnormal mitosis  (IAGP)
abnormal plasma cell differentiation  (IAGP)
abnormal plasmablast number  (IAGP)
abnormal pro-B cell differentiation  (IAGP)
abnormal renal corpuscle morphology  (IAGP)
abnormal somatic hypermutation frequency  (IAGP)
abnormal spleen B cell follicle morphology  (IAGP)
abnormal spleen marginal zone macrophage morphology  (IAGP)
abnormal spleen morphology  (IAGP)
abnormal spleen red pulp morphology  (IAGP)
abnormal T cell differentiation  (IAGP)
absent B-1a cells  (IAGP)
absent immature B cells  (IAGP)
absent mature B cells  (IAGP)
absent pre-B cells  (IAGP)
anemia  (IAGP)
arrested B cell differentiation  (IAGP)
decreased B cell apoptosis  (IAGP)
decreased B cell number  (IAGP)
decreased B cell proliferation  (IAGP)
decreased B-1 B cell number  (IAGP)
decreased B-1a cell number  (IAGP)
decreased B-1b cell number  (IAGP)
decreased bone marrow cell number  (IAGP)
decreased double-positive T cell number  (IAGP)
decreased early pro-B cell number  (IAGP)
decreased follicular B cell number  (IAGP)
decreased germinal center B cell number  (IAGP)
decreased IgA level  (IAGP)
decreased IgD level  (IAGP)
decreased IgE level  (IAGP)
decreased IgG level  (IAGP)
decreased IgG1 level  (IAGP)
decreased IgG2a level  (IAGP)
decreased IgG2b level  (IAGP)
decreased IgG2c level  (IAGP)
decreased IgG3 level  (IAGP)
decreased IgM level  (IAGP)
decreased immature B cell number  (IAGP)
decreased immunoglobulin level  (IAGP)
decreased interleukin-10 secretion  (IAGP)
decreased interleukin-2 secretion  (IAGP)
decreased late pro-B cell number  (IAGP)
decreased lymphoma incidence  (IAGP)
decreased marginal zone B cell number  (IAGP)
decreased mature B cell number  (IAGP)
decreased pre-B cell number  (IAGP)
decreased pro-B cell number  (IAGP)
decreased spleen germinal center number  (IAGP)
decreased spleen germinal center size  (IAGP)
decreased spleen weight  (IAGP)
decreased splenocyte number  (IAGP)
decreased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
decreased T cell number  (IAGP)
decreased transitional stage B cell number  (IAGP)
decreased transitional stage T1 B cell number  (IAGP)
decreased transitional stage T2 B cell number  (IAGP)
decreased transitional stage T3 B cell number  (IAGP)
demyelination  (IAGP)
enlarged liver  (IAGP)
enlarged lymph nodes  (IAGP)
enlarged spleen  (IAGP)
glomerulonephritis  (IAGP)
impaired humoral immune response  (IEA)
increased anti-chromatin antibody level  (IAGP)
increased anti-double stranded DNA antibody level  (IAGP)
increased anti-nuclear antigen antibody level  (IAGP)
increased anti-single stranded DNA antibody level  (IAGP)
increased autoantibody level  (IAGP)
increased B cell acute lymphoblastic leukemia incidence  (IAGP)
increased B cell apoptosis  (IAGP)
increased B cell number  (IAGP)
increased B cell proliferation  (IAGP)
increased B-1b cell number  (IAGP)
increased bone marrow cell number  (IAGP)
increased CD4-positive, alpha-beta T cell number  (IAGP)
increased CD8-positive, alpha-beta T cell number  (IAGP)
increased circulating interferon-gamma level  (IAGP)
increased circulating interleukin-10 level  (IAGP)
increased circulating interleukin-6 level  (IAGP)
increased circulating tumor necrosis factor level  (IAGP)
increased follicular B cell number  (IAGP)
increased germinal center B cell number  (IAGP)
increased IgG level  (IAGP)
increased IgG2b level  (IAGP)
increased IgG2c level  (IAGP)
increased IgM level  (IAGP)
increased immature B cell number  (IAGP)
increased interferon-gamma secretion  (IAGP)
increased interleukin-10 secretion  (IAGP)
increased interleukin-17 secretion  (IAGP)
increased late pro-B cell number  (IAGP)
increased leukocyte cell number  (IAGP)
increased lymphoma incidence  (IAGP)
increased marginal zone B cell number  (IAGP)
increased plasma cell number  (IAGP)
increased pre-B cell number  (IAGP)
increased pre-pro B cell number  (IAGP)
increased pro-B cell number  (IAGP)
increased regulatory T cell number  (IAGP)
increased spleen weight  (IAGP)
increased susceptibility to experimental autoimmune encephalomyelitis  (IAGP)
increased susceptibility to Riboviria infection  (IAGP)
increased susceptibility to systemic lupus erythematosus  (IAGP)
increased T cell number  (IAGP)
increased transitional stage B cell number  (IAGP)
increased transitional stage T1 B cell number  (IAGP)
increased transitional stage T2 B cell number  (IAGP)
increased transitional stage T3 B cell number  (IAGP)
increased tumor latency  (IAGP)
increased tumor necrosis factor secretion  (IAGP)
no abnormal phenotype detected  (IAGP)
premature death  (IAGP)
small spleen  (IAGP)
spleen atrophy  (IAGP)
thrombocytopenia  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. Mouse MP Annotation Import Pipeline RGD automated import pipeline
4. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1373499   PMID:1639443   PMID:1922076   PMID:2023945   PMID:2269334   PMID:2358676   PMID:2463161   PMID:7916003   PMID:8001125   PMID:8168489   PMID:8626447   PMID:8650582  
PMID:8812484   PMID:9171887   PMID:10349636   PMID:10429672   PMID:10587346   PMID:10591178   PMID:10591179   PMID:10933603   PMID:11042159   PMID:11076861   PMID:11136817   PMID:11217851  
PMID:11238609   PMID:11514602   PMID:11854359   PMID:11857807   PMID:11869689   PMID:11909947   PMID:12006975   PMID:12097390   PMID:12165508   PMID:12446773   PMID:12466851   PMID:12477932  
PMID:12612069   PMID:14638847   PMID:14684824   PMID:15004164   PMID:15024049   PMID:15186779   PMID:15240688   PMID:15361869   PMID:15661879   PMID:15796902   PMID:15879130   PMID:15972641  
PMID:16141072   PMID:16141073   PMID:16292344   PMID:16690746   PMID:16782029   PMID:16818674   PMID:16860757   PMID:16940357   PMID:17082596   PMID:17110436   PMID:17114463   PMID:17163454  
PMID:17420268   PMID:17493844   PMID:17504937   PMID:18194817   PMID:18329371   PMID:18356083   PMID:18488031   PMID:18538592   PMID:18566414   PMID:18713867   PMID:18978794   PMID:19039769  
PMID:19109166   PMID:19155482   PMID:19407814   PMID:19412180   PMID:19567880   PMID:19812384   PMID:19828641   PMID:19843942   PMID:20130238   PMID:20176802   PMID:20194438   PMID:20231378  
PMID:20818374   PMID:20837062   PMID:20861359   PMID:20940318   PMID:21045148   PMID:21187409   PMID:21267068   PMID:21353603   PMID:21423173   PMID:21427701   PMID:21464221   PMID:21530328  
PMID:21549805   PMID:21572027   PMID:21572033   PMID:21604259   PMID:21606361   PMID:21625223   PMID:21646720   PMID:21688146   PMID:21708930   PMID:21788582   PMID:21795747   PMID:21841126  
PMID:21873635   PMID:21960637   PMID:21964606   PMID:21983080   PMID:22035845   PMID:22075701   PMID:22078222   PMID:22120117   PMID:22157821   PMID:22213803   PMID:22219325   PMID:22291095  
PMID:22302739   PMID:22327073   PMID:22431510   PMID:22473956   PMID:22517907   PMID:22560297   PMID:22665574   PMID:22761313   PMID:22891272   PMID:23027924   PMID:23027925   PMID:23027941  
PMID:23087187   PMID:23109291   PMID:23123062   PMID:23159227   PMID:23263181   PMID:23264658   PMID:23343763   PMID:23345428   PMID:23345431   PMID:23453632   PMID:23453634   PMID:23531880  
PMID:23669394   PMID:23704093   PMID:23850379   PMID:23874770   PMID:23913047   PMID:23942237   PMID:23955076   PMID:23977324   PMID:23991203   PMID:24043890   PMID:24045941   PMID:24129701  
PMID:24146823   PMID:24184055   PMID:24190965   PMID:24204255   PMID:24204301   PMID:24218606   PMID:24240234   PMID:24244019   PMID:24244439   PMID:24246674   PMID:24297995   PMID:24336796  
PMID:24376269   PMID:24379120   PMID:24442639   PMID:24487434   PMID:24509509   PMID:24563255   PMID:24590766   PMID:24747299   PMID:24757136   PMID:24833394   PMID:24887457   PMID:24888588  
PMID:24958853   PMID:24979759   PMID:24979783   PMID:25044405   PMID:25053813   PMID:25074913   PMID:25124037   PMID:25267612   PMID:25274307   PMID:25288397   PMID:25382621   PMID:25484301  
PMID:25630702   PMID:25676421   PMID:25680182   PMID:25706746   PMID:25753524   PMID:25987726   PMID:26004187   PMID:26046660   PMID:26059604   PMID:26100872   PMID:26150531   PMID:26195802  
PMID:26232433   PMID:26256668   PMID:26274929   PMID:26301816   PMID:26302788   PMID:26324445   PMID:26468226   PMID:26500062   PMID:26502404   PMID:26573295   PMID:26586568   PMID:26621859  
PMID:26660426   PMID:26673134   PMID:26714588   PMID:26810226   PMID:26832406   PMID:26903242   PMID:26932576   PMID:27013243   PMID:27091986   PMID:27099294   PMID:27102483   PMID:27114609  
PMID:27158841   PMID:27162138   PMID:27218486   PMID:27222343   PMID:27467586   PMID:27481093   PMID:27521345   PMID:27523608   PMID:27566940   PMID:27571405   PMID:27641147   PMID:27695000  
PMID:27705788   PMID:27758892   PMID:27798619   PMID:27810920   PMID:27869616   PMID:27875245   PMID:27880903   PMID:27883180   PMID:27886239   PMID:27889108   PMID:27895164   PMID:27924814  
PMID:28062693   PMID:28087665   PMID:28143955   PMID:28192788   PMID:28288979   PMID:28378742   PMID:28394372   PMID:28414328   PMID:28461481   PMID:28461496   PMID:28507547   PMID:28533444  
PMID:28566276   PMID:28620068   PMID:28636954   PMID:28724724   PMID:28739911   PMID:28747344   PMID:28805811   PMID:28916727   PMID:28916732   PMID:28922373   PMID:28972089   PMID:29042531  
PMID:29109124   PMID:29114251   PMID:29167438   PMID:29186690   PMID:29249358   PMID:29282308   PMID:29293266   PMID:29326381   PMID:29337116   PMID:29343683   PMID:29358707   PMID:29453398  
PMID:29520062   PMID:29521626   PMID:29551267   PMID:29562201   PMID:29599769   PMID:29654209   PMID:29712834   PMID:29728511   PMID:29750959   PMID:29791846   PMID:29802242   PMID:29871911  
PMID:29871912   PMID:29897930   PMID:29925675   PMID:29996100   PMID:30021765   PMID:30046110   PMID:30061199   PMID:30093657   PMID:30158115   PMID:30196744   PMID:30282750   PMID:30405245  
PMID:30467111   PMID:30478091   PMID:30566865   PMID:30604754   PMID:30605667   PMID:30779858   PMID:30936881   PMID:30948496   PMID:30962292   PMID:31000603   PMID:31015337   PMID:31042472  
PMID:31042474   PMID:31085655   PMID:31087643   PMID:31088898   PMID:31097467   PMID:31204070   PMID:31213601   PMID:31231033   PMID:31242236   PMID:31291582   PMID:31395740   PMID:31399517  
PMID:31474573   PMID:31533002   PMID:31548329   PMID:31644907   PMID:31676673   PMID:31699777   PMID:31722204   PMID:31804490   PMID:31836657   PMID:32005754   PMID:32081131   PMID:32169821  
PMID:32213346   PMID:32255767   PMID:32294437   PMID:32325489   PMID:32341059   PMID:32407154   PMID:32451433   PMID:32571841   PMID:32610122   PMID:32612238   PMID:32680956   PMID:32778659  
PMID:32868928   PMID:32878998   PMID:32889526   PMID:32907369   PMID:32918044   PMID:33024996   PMID:33119032   PMID:33148712   PMID:33149299   PMID:33207194   PMID:33214146   PMID:33264610  
PMID:33306108   PMID:33326791   PMID:33357426   PMID:33383090   PMID:33410591   PMID:33488628   PMID:33512383   PMID:33750849   PMID:33878293   PMID:33912157   PMID:34001658   PMID:34033676  
PMID:34112805   PMID:34193976   PMID:34214192   PMID:34220793   PMID:34255829   PMID:34336858   PMID:34392111   PMID:34406363   PMID:34450044   PMID:34469720   PMID:34499925   PMID:34762046  
PMID:34879220   PMID:34888947   PMID:34919144   PMID:35028616   PMID:35064115   PMID:35081372   PMID:35120522   PMID:35139388   PMID:35189575   PMID:35294874   PMID:35321883   PMID:35371049  
PMID:35379742   PMID:35379825   PMID:35451955   PMID:35531955   PMID:35634349   PMID:35696562   PMID:36104343   PMID:36110849   PMID:36115337   PMID:36167471   PMID:36190107   PMID:36316474  
PMID:36341341   PMID:36417848   PMID:36439112   PMID:36532012   PMID:36543128   PMID:36595686   PMID:36627370   PMID:36631557   PMID:36646114   PMID:36662229   PMID:36696903   PMID:36700204  
PMID:36717247   PMID:36719764   PMID:36759711   PMID:36802427   PMID:36803766   PMID:36868219   PMID:36890795   PMID:37000855   PMID:37095377   PMID:38011999   PMID:38049580   PMID:38095286  
PMID:38167945   PMID:38355795   PMID:38529289   PMID:38625151   PMID:38689024  


Genomics

Comparative Map Data
Cd79a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39724,596,922 - 24,601,283 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl724,596,806 - 24,601,622 (+)EnsemblGRCm39 Ensembl
GRCm38724,897,497 - 24,901,858 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl724,897,381 - 24,902,197 (+)EnsemblGRCm38mm10GRCm38
MGSCv37725,682,530 - 25,687,216 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36724,606,271 - 24,610,957 (+)NCBIMGSCv36mm8
Celera719,513,406 - 19,518,092 (+)NCBICelera
Cytogenetic Map7A3NCBI
cM Map713.49NCBI
CD79A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381941,877,279 - 41,881,372 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1941,877,279 - 41,881,372 (+)EnsemblGRCh38hg38GRCh38
GRCh371942,381,349 - 42,385,439 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361947,073,030 - 47,077,279 (+)NCBINCBI36Build 36hg18NCBI36
Build 341947,073,178 - 47,077,278NCBI
Celera1939,180,875 - 39,185,124 (+)NCBICelera
Cytogenetic Map19q13.2NCBI
HuRef1938,812,471 - 38,816,723 (+)NCBIHuRef
CHM1_11942,382,655 - 42,386,907 (+)NCBICHM1_1
T2T-CHM13v2.01944,696,761 - 44,700,859 (+)NCBIT2T-CHM13v2.0
Cd79a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8189,621,460 - 89,625,813 (+)NCBIGRCr8
mRatBN7.2180,493,581 - 80,497,936 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl180,493,581 - 80,497,935 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx185,886,132 - 85,890,482 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0194,436,945 - 94,441,299 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0187,641,892 - 87,646,243 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0181,763,609 - 81,768,039 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl181,763,614 - 81,767,980 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,020,638 - 83,024,665 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera174,941,067 - 74,945,272 (+)NCBICelera
Cytogenetic Map1q21NCBI
Cd79a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955555961,522 - 965,605 (-)EnsemblChiLan1.0
ChiLan1.0NW_004955555961,522 - 965,605 (-)NCBIChiLan1.0ChiLan1.0
CD79A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22047,981,999 - 47,986,396 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11949,850,959 - 49,856,232 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01938,765,067 - 38,769,556 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11947,270,377 - 47,274,711 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1947,270,377 - 47,274,711 (+)Ensemblpanpan1.1panPan2
CD79A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11112,411,281 - 112,414,827 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1112,411,281 - 112,427,381 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1111,847,599 - 111,851,145 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01113,035,214 - 113,038,758 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1113,035,113 - 113,038,688 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11112,588,584 - 112,592,129 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01112,224,735 - 112,228,272 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01113,151,211 - 113,154,758 (-)NCBIUU_Cfam_GSD_1.0
Cd79a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934916,213,842 - 16,217,393 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936706561,140 - 564,661 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936706561,195 - 564,577 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CD79A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl649,995,765 - 49,999,340 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1649,996,116 - 49,999,294 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2646,049,091 - 46,054,273 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CD79A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1636,078,057 - 36,089,367 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366607314,319,561 - 14,325,024 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cd79a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624907803,359 - 806,897 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624907803,439 - 806,879 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cd79a
165 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:321
Count of miRNA genes:223
Interacting mature miRNAs:224
Transcripts:ENSMUST00000003469
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300722Sle3_msystemic lupus erythmatosus susceptibility 3 (mouse)Not determined7351172887142720Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
4141566Femwf8_mfemur work to failure 8 (mouse)Not determined1303248547032621Mouse
1301041Prnr2_mprion resistance 2 (mouse)Not determined71872879439674033Mouse
12904742Litsq2_mlitter size QTL 2 (mouse)72267388756674033Mouse
1301622Eae12_msusceptibility to experimental allergic encephalomyelitis 12 (mouse)Not determined71928001553280104Mouse
11354952Pdcc1_mplasmacytoid dentritic cell compartment 1 (mouse)72306653157066531Mouse
38501068Tip1_mtuberculosis immunophenotype 1, spleen CFU (mouse)7360299972549748Mouse
1301115Lrdm1_mlymphoproliferation (Fas) renal disease modifier 1 (mouse)Not determined7335204824879418Mouse
25314314Sccor1_msynaptonemal complex length to mean MLH1 count ratio 1 (mouse)71333392547349748Mouse
10449139Eosn1_meosinophil differential 1 (mouse)71248087746480877Mouse
1301052Bhr6_mbronchial hyperresponsiveness 6 (mouse)Not determined71984225053842367Mouse
11522751Cocia17_mcocaine-induced activity, QTL 17 (mouse)71313520447135204Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
1301572Sluc30_msusceptibility to lung cancer 30 (mouse)Not determined7243169636431844Mouse
1357699Nhdlq6_mnon-HDL QTL 6 (mouse)Not determined7998886743988984Mouse
10449158Eosn3_meosinophil differential 3 (mouse)71248087746480877Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
1558893Spir1_mStreptococcus pneumoniae infection resistance 1 (mouse)Not determined71030579844305936Mouse
1301709Bdt4_mbone density traits 4 (mouse)Not determined72288857256888716Mouse
1559016Drsi_mDCC-related Spp1 induction (mouse)Not determined71663729349159331Mouse

Markers in Region
Cd79a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7A3UniSTS
cM Map75.5UniSTS
Cd79a  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7A3UniSTS


Expression


Sequence


Ensembl Acc Id: ENSMUST00000003469   ⟹   ENSMUSP00000003469
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl724,596,806 - 24,601,622 (+)Ensembl
GRCm38.p6 Ensembl724,897,381 - 24,902,197 (+)Ensembl
RefSeq Acc Id: NM_007655   ⟹   NP_031681
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39724,596,922 - 24,601,283 (+)NCBI
GRCm38724,897,497 - 24,901,858 (+)NCBI
MGSCv37725,682,530 - 25,687,216 (+)RGD
Celera719,513,406 - 19,518,092 (+)RGD
cM Map7 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_031681 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAA39494 (Get FASTA)   NCBI Sequence Viewer  
  AAH27633 (Get FASTA)   NCBI Sequence Viewer  
  BAE25458 (Get FASTA)   NCBI Sequence Viewer  
  CAA31801 (Get FASTA)   NCBI Sequence Viewer  
  EDL24308 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000003469
  ENSMUSP00000003469.8
GenBank Protein P11911 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_031681   ⟸   NM_007655
- Peptide Label: precursor
- UniProtKB: Q6GTY0 (UniProtKB/Swiss-Prot),   P11911 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000003469   ⟸   ENSMUST00000003469
Protein Domains
Ig-like C2-type   ITAM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P11911-F1-model_v2 AlphaFold P11911 1-220 view protein structure

Promoters
RGD ID:6892222
Promoter ID:EPDNEW_M9562
Type:initiation region
Name:Cd79a_1
Description:Mus musculus CD79A antigen (immunoglobulin-associated alpha), mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38724,897,497 - 24,897,557EPDNEW
RGD ID:6840811
Promoter ID:MM_KWN:49402
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:BoneMarrow_0Hour,   ES_Cell,   Lung,   Spleen
Transcripts:OTTMUST00000072520
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36725,681,451 - 25,682,517 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:101774 AgrOrtholog
Ensembl Genes ENSMUSG00000003379 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000003469 ENTREZGENE
  ENSMUST00000003469.8 UniProtKB/Swiss-Prot
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot
InterPro CD79a/CD79b UniProtKB/Swiss-Prot
  Ig-like_dom UniProtKB/Swiss-Prot
  Ig-like_dom_sf UniProtKB/Swiss-Prot
  Ig-like_fold UniProtKB/Swiss-Prot
  Ig_sub UniProtKB/Swiss-Prot
  Immunoglobulin UniProtKB/Swiss-Prot
  Phos_immunorcpt_sig_ITAM UniProtKB/Swiss-Prot
KEGG Report mmu:12518 UniProtKB/Swiss-Prot
MGD MGI:101774 ENTREZGENE
NCBI Gene 12518 ENTREZGENE
PANTHER B-CELL ANTIGEN RECEPTOR COMPLEX-ASSOCIATED PROTEIN ALPHA CHAIN UniProtKB/Swiss-Prot
  PTHR14334 UniProtKB/Swiss-Prot
Pfam ITAM UniProtKB/Swiss-Prot
  PF00047 UniProtKB/Swiss-Prot
PhenoGen Cd79a PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot
  ITAM_1 UniProtKB/Swiss-Prot
SMART ITAM UniProtKB/Swiss-Prot
  SM00409 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot
UniProt CD79A_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q6GTY0 ENTREZGENE
UniProt Secondary Q6GTY0 UniProtKB/Swiss-Prot