Cdh3 (cadherin 3) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Cdh3 (cadherin 3) Mus musculus
Analyze
Symbol: Cdh3
Name: cadherin 3
RGD ID: 1617635
MGI Page MGI
Description: Predicted to enable beta-catenin binding activity and cadherin binding activity. Acts upstream of or within cell-cell adhesion. Located in adherens junction and plasma membrane. Is expressed in several structures, including alimentary system; embryo ectoderm; genitourinary system; nervous system; and sensory organ. Human ortholog(s) of this gene implicated in congenital hypotrichosis with juvenile macular dystrophy and ectodermal dysplasia, ectrodactyly, and macular dystrophy syndrome. Orthologous to human CDH3 (cadherin 3).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AI385538; Ca; cadherin-3; Cadp; Cdhp; P-cad; P-cadherin; Pc; Pcad; placental cadherin; RPE-specific cadherin
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,237,484 - 107,283,543 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8107,237,523 - 107,283,929 (+)EnsemblGRCm39 Ensembl
GRCm388106,510,852 - 106,556,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8106,510,891 - 106,557,297 (+)EnsemblGRCm38mm10GRCm38
MGSCv378109,034,791 - 109,080,808 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368109,400,020 - 109,446,037 (+)NCBIMGSCv36mm8
Celera8110,734,945 - 110,781,298 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.16NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (ISO)
1-nitropyrene  (ISO)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2-acetamidofluorene  (ISO)
4,4'-diaminodiphenylmethane  (EXP)
4,4'-sulfonyldiphenol  (EXP,ISO)
4-hydroxynon-2-enal  (ISO)
5-aza-2'-deoxycytidine  (ISO)
6-propyl-2-thiouracil  (EXP,ISO)
acetamide  (ISO)
acrylamide  (ISO)
actinomycin D  (ISO)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (EXP,ISO)
ammonium chloride  (ISO)
amosite asbestos  (ISO)
apocynin  (EXP)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (ISO)
atrazine  (ISO)
belinostat  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[e]pyrene  (ISO)
beta-naphthoflavone  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
butan-1-ol  (ISO)
calcitriol  (ISO)
camptothecin  (ISO)
carbon nanotube  (EXP)
chlordecone  (EXP)
chloropicrin  (ISO)
chrysene  (EXP)
cisplatin  (ISO)
cobalt dichloride  (ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) chloride  (ISO)
crocidolite asbestos  (ISO)
Cuprizon  (ISO)
cyclophosphamide  (ISO)
cytarabine  (ISO)
deguelin  (ISO)
Deoxycorticosterone acetate  (EXP)
dibutyl phthalate  (EXP)
diiodine  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
elemental selenium  (ISO)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (EXP,ISO)
furan  (ISO)
genistein  (ISO)
glycidol  (ISO)
hexadecanoic acid  (ISO)
homocysteine  (EXP)
hydrogen peroxide  (ISO)
ibuprofen  (ISO)
inulin  (EXP)
isobutanol  (ISO)
lead diacetate  (ISO)
lead(0)  (ISO)
lipopolysaccharide  (ISO)
mercury dibromide  (ISO)
methapyrilene  (ISO)
methylmercury chloride  (ISO)
N-benzyloxycarbonyl-L-leucyl-L-leucyl-L-leucinal  (EXP)
N-nitrosodiethylamine  (ISO)
nickel atom  (ISO)
nickel sulfate  (ISO)
Nutlin-3  (ISO)
okadaic acid  (ISO)
orphenadrine  (ISO)
p-menthan-3-ol  (ISO)
panobinostat  (ISO)
paracetamol  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
phenylmercury acetate  (ISO)
potassium dichromate  (EXP)
puromycin  (EXP)
rofecoxib  (ISO)
rotenone  (ISO)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
S-nitrosoglutathione  (ISO)
SB 431542  (ISO)
selenium atom  (ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenite  (ISO)
sodium chloride  (EXP)
sotorasib  (ISO)
sunitinib  (ISO)
tert-butyl hydroperoxide  (ISO)
thiram  (ISO)
titanium dioxide  (EXP)
trametinib  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (EXP)
triptonide  (EXP)
valproic acid  (ISO)
vitamin E  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
adherens junction  (IBA,IDA,IEA)
catenin complex  (IBA)
cell junction  (IEA,ISO)
cytoplasm  (IBA)
membrane  (IEA)
plasma membrane  (IDA,IEA,ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:1886768   PMID:1904011   PMID:2317870   PMID:2793940   PMID:2806125   PMID:2806126   PMID:3428270   PMID:3539943   PMID:7743137   PMID:7750649   PMID:7781895   PMID:8227214  
PMID:8515462   PMID:8567126   PMID:8619966   PMID:8808390   PMID:8879495   PMID:8955792   PMID:9015265   PMID:9069116   PMID:9226036   PMID:9226037   PMID:9328434   PMID:9362520  
PMID:9383070   PMID:9449663   PMID:9682977   PMID:10333730   PMID:10349636   PMID:10439220   PMID:10545227   PMID:10707907   PMID:10771476   PMID:10922068   PMID:11032855   PMID:11042159  
PMID:11076861   PMID:11217851   PMID:11443471   PMID:11748141   PMID:11839813   PMID:12060406   PMID:12126948   PMID:12466851   PMID:12477932   PMID:12520002   PMID:12646922   PMID:12904583  
PMID:12919105   PMID:14610273   PMID:14681479   PMID:14997319   PMID:15148305   PMID:15306695   PMID:15630473   PMID:15728677   PMID:15775979   PMID:15805154   PMID:16141072   PMID:16141073  
PMID:16319116   PMID:16462742   PMID:16602821   PMID:16809539   PMID:16919267   PMID:17278136   PMID:17292359   PMID:18083014   PMID:18199584   PMID:18224708   PMID:18320359   PMID:18593557  
PMID:18676816   PMID:18799693   PMID:18809908   PMID:18829530   PMID:18849982   PMID:19165927   PMID:19427292   PMID:19474150   PMID:19521566   PMID:19596317   PMID:19666824   PMID:19783739  
PMID:19786578   PMID:20046825   PMID:20212509   PMID:20826529   PMID:20930145   PMID:20962855   PMID:21317933   PMID:21445019   PMID:21521738   PMID:21680756   PMID:21720740   PMID:21873635  
PMID:21926481   PMID:22115758   PMID:22144916   PMID:22168923   PMID:22223257   PMID:22495305   PMID:22710718   PMID:22792072   PMID:23034632   PMID:23108156   PMID:23271346   PMID:23277553  
PMID:23389444   PMID:23431057   PMID:23487314   PMID:23974039   PMID:24012369   PMID:24198274   PMID:24222445   PMID:24371086   PMID:24442140   PMID:24492243   PMID:24875170   PMID:24952961  
PMID:24982158   PMID:25126785   PMID:25253890   PMID:25691658   PMID:26256211   PMID:26405179   PMID:26450968   PMID:26765568   PMID:26783302   PMID:26792522   PMID:26952977   PMID:26992132  
PMID:27097562   PMID:27234308   PMID:27317810   PMID:27807348   PMID:28494434   PMID:28604778   PMID:29180573   PMID:29338041   PMID:29899403   PMID:30186101   PMID:30297418   PMID:30595533  
PMID:30735538   PMID:31672914   PMID:31835801   PMID:32109382   PMID:32845239   PMID:32878924   PMID:33227706   PMID:33297480   PMID:33304758   PMID:33833667   PMID:34108685   PMID:34757798  
PMID:34905516   PMID:34957547   PMID:35302059   PMID:35421372   PMID:35563773   PMID:35858560   PMID:36468795   PMID:36649236   PMID:36712970   PMID:37318953   PMID:38131461   PMID:38264972  
PMID:38828908   PMID:39361422  


Genomics

Comparative Map Data
Cdh3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm398107,237,484 - 107,283,543 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl8107,237,523 - 107,283,929 (+)EnsemblGRCm39 Ensembl
GRCm388106,510,852 - 106,556,911 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl8106,510,891 - 106,557,297 (+)EnsemblGRCm38mm10GRCm38
MGSCv378109,034,791 - 109,080,808 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv368109,400,020 - 109,446,037 (+)NCBIMGSCv36mm8
Celera8110,734,945 - 110,781,298 (+)NCBICelera
Cytogenetic Map8D3NCBI
cM Map853.16NCBI
CDH3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381668,645,310 - 68,733,771 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1668,636,189 - 68,727,468 (+)EnsemblGRCh38hg38GRCh38
GRCh371668,679,213 - 68,734,195 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361667,236,277 - 67,290,443 (+)NCBINCBI36Build 36hg18NCBI36
Build 341667,236,276 - 67,290,442NCBI
Celera1653,187,169 - 53,242,286 (+)NCBICelera
Cytogenetic Map16q22.1NCBI
HuRef1654,551,120 - 54,605,916 (+)NCBIHuRef
CHM1_11670,086,362 - 70,141,056 (+)NCBICHM1_1
T2T-CHM13v2.01674,441,601 - 74,531,453 (+)NCBIT2T-CHM13v2.0
Cdh3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81951,303,414 - 51,353,900 (+)NCBIGRCr8
GRCr8 Ensembl1951,300,083 - 51,354,257 (+)EnsemblGRCr8 Ensembl
mRatBN7.21934,393,596 - 34,444,084 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1934,393,727 - 34,444,084 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1941,209,266 - 41,259,606 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01941,862,587 - 41,912,930 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01944,161,722 - 44,212,069 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01938,668,957 - 38,719,801 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1938,669,230 - 38,719,677 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01949,536,859 - 49,587,578 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41936,343,823 - 36,393,819 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1933,820,490 - 33,870,862 (+)NCBICelera
RGSC_v3.11936,395,654 - 36,397,989 (+)NCBI
Cytogenetic Map19q12NCBI
Cdh3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554847,938,495 - 7,986,231 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554847,937,847 - 7,985,418 (-)NCBIChiLan1.0ChiLan1.0
CDH3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21878,185,107 - 78,242,221 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11684,096,426 - 84,153,602 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01649,015,115 - 49,071,903 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11668,408,078 - 68,465,287 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1668,407,625 - 68,465,287 (+)Ensemblpanpan1.1panPan2
CDH3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1580,864,859 - 80,912,136 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl580,863,661 - 80,913,019 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha580,855,712 - 80,903,039 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0581,300,176 - 81,347,383 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl581,300,808 - 81,348,235 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1581,126,956 - 81,174,134 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0580,810,235 - 80,857,421 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0581,450,703 - 81,498,265 (-)NCBIUU_Cfam_GSD_1.0
Cdh3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934940,634,712 - 40,682,648 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647518,906,493 - 18,955,072 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493647518,908,031 - 18,954,402 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CDH3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl618,191,664 - 18,235,862 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1618,190,971 - 18,236,184 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2616,844,456 - 16,853,923 (+)NCBISscrofa10.2Sscrofa10.2susScr3
CDH3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1558,717,600 - 58,775,033 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl558,717,597 - 58,775,339 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604721,455,596 - 21,513,438 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Cdh3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474617,616,940 - 17,658,548 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474617,616,296 - 17,659,021 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Cdh3
4093 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:477
Count of miRNA genes:367
Interacting mature miRNAs:402
Transcripts:ENSMUST00000080797
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300560Tgl1_mtriglyceride level 1 (mouse)Not determined8102486208111650036Mouse
4141435Fbtq3_mfemoral bone trait QTL 3 (mouse)Not determined8100965309130127694Mouse
11252141Fdr2_mfat response to dietary restriction 2 (mouse)898390634130127694Mouse
1357470Obq16_mobesity QTL 16 (mouse)Not determined876411976110412125Mouse
1302105Im1_mImmunoregulatory 1 (mouse)Not determined899828531130127694Mouse
1301080Sluc9_msusceptibility to lung cancer 9 (mouse)Not determined899828531130127694Mouse
1558875Eae31_mexperimental allergic encephalomyelitis susceptibility 31 (mouse)Not determined835109930115563747Mouse
14746994Manh65_mmandible shape 65 (mouse)8106489629130127694Mouse
10412234Nhdlq14_mnon-HDL QTL 14 (mouse)Not determined876411976110412125Mouse
1301766Desp1_mdespair 1 (mouse)Not determined885486208119486373Mouse
1301253Skmw2_mskeletal muscle weight 2 (mouse)Not determined886443553120443701Mouse
1301316Dntcs1_mdental caries susceptibility 1 (mouse)Not determined8103443553127781786Mouse
4140967Bmd39_mbone mineral density 39 (mouse)Not determined832506572117965439Mouse
1357708Orq1_movulation rate QTL 1 (mouse)Not determined871740461124622354Mouse
1300681Pgia22_mproteoglycan induced arthritis 22 (mouse)Not determined8102486208116025457Mouse
10755519Wbc1_mwhite blood cell count 1 (mouse)882345783116345783Mouse
27226754Femd6_mfemur midshaft diameter 6, 10 week (mouse)837867154110326632Mouse
1301581Char2_mP. chabaudi malaria resistance QTL 2 (mouse)Not determined879808806113809031Mouse
1301874Hdlq16_mHDL QTL 16 (mouse)Not determined876411976110412125Mouse
1357494Obsty2_mobesity 2 (mouse)Not determined896245241129745061Mouse
10045619Heal14_mwound healing/regeneration 14 (mouse)Not determined886443553120443701Mouse
1300920Pitm3_mprion incubation time 3 (mouse)Not determined873929123107929226Mouse
12880431Fgf23lq2_mFGF23 serum level QTL 2 (mouse)897626632130127694Mouse
10755530Wbc2_mwhite blood cell count 2 (mouse)881819296115819296Mouse
1302049Heal1_mwound healing/regeneration 1 (mouse)Not determined886443553120443701Mouse
27226796Scvln16_msacral vertebrae length 2, 16 week (mouse)889726628130027694Mouse
27095912Pglq14_mpelvic girdle length QTL 14, 16 week (mouse)874126628126826739Mouse
4142023W3q5_mweight 3 weeks QTL 5 (mouse)Not determined71740461124622354Mouse
1301099Cbm2_mcerebellum weight 2 (mouse)Not determined879245241113245331Mouse
1301481Lith11_mlithogenic gene 11 (mouse)Not determined898563635130127694Mouse
11532692Sluc38a_msusceptibility to lung cancer 38a (mouse)8105033977130127694Mouse
11532691Sluc38_msusceptibility to lung cancer 38 (mouse)8105033977130127694Mouse
1558890Lith18_mlithogenic gene 18 (mouse)Not determined876402145110402251Mouse

Markers in Region
AI385538  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388106,555,837 - 106,555,941UniSTSGRCm38
MGSCv378109,079,737 - 109,079,841UniSTSGRCm37
Celera8110,780,047 - 110,780,151UniSTS
Cytogenetic Map8D3UniSTS
cM Map853.3UniSTS
Whitehead/MRC_RH81269.3UniSTS
X06340  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm388106,555,726 - 106,555,925UniSTSGRCm38
MGSCv378109,079,626 - 109,079,825UniSTSGRCm37
Celera8110,779,936 - 110,780,135UniSTS
Cytogenetic Map8D3UniSTS
cM Map853.3UniSTS
Whitehead/MRC_RH9719.56UniSTS
Cdh3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8D3UniSTS
cM Map853.3UniSTS
cM Map853.3UniSTS
Cdh3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8D3UniSTS
cM Map853.3UniSTS
Cdh3  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map8D3UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000080797   ⟹   ENSMUSP00000079613
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl8107,237,523 - 107,283,929 (+)Ensembl
GRCm38.p6 Ensembl8106,510,891 - 106,557,297 (+)Ensembl
RefSeq Acc Id: NM_001037809   ⟹   NP_001032898
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398107,237,484 - 107,283,543 (+)NCBI
GRCm388106,510,852 - 106,556,911 (+)NCBI
MGSCv378109,034,791 - 109,080,808 (+)RGD
Celera8110,734,906 - 110,781,301 (+)NCBI
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_007665   ⟹   NP_031691
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm398107,237,484 - 107,283,543 (+)NCBI
GRCm388106,510,852 - 106,556,911 (+)NCBI
MGSCv378109,034,791 - 109,080,808 (+)RGD
Celera8110,734,906 - 110,781,301 (+)NCBI
cM Map8 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_031691   ⟸   NM_007665
- Peptide Label: isoform b preproprotein
- UniProtKB: Q8BRE1 (UniProtKB/TrEMBL),   Q80VY6 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001032898   ⟸   NM_001037809
- Peptide Label: isoform a preproprotein
- UniProtKB: Q61465 (UniProtKB/Swiss-Prot),   Q8BSL6 (UniProtKB/Swiss-Prot),   P10287 (UniProtKB/Swiss-Prot),   Q80VY6 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000079613   ⟸   ENSMUST00000080797
Protein Domains
Cadherin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-P10287-F1-model_v2 AlphaFold P10287 1-822 view protein structure

Promoters
RGD ID:8668183
Promoter ID:EPDNEW_M12122
Type:initiation region
Name:Cdh3_1
Description:Mus musculus cadherin 3 , transcript variant 1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm388106,510,891 - 106,510,951EPDNEW
RGD ID:6842916
Promoter ID:MM_KWN:55619
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain,   ES_Cell,   MEF_B4,   MEF_B6
Transcripts:ENSMUST00000080797,   UC009NGG.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv368109,034,769 - 109,035,269 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:88356 AgrOrtholog
Ensembl Genes ENSMUSG00000061048 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000080797 ENTREZGENE
  ENSMUST00000080797.8 UniProtKB/Swiss-Prot
Gene3D-CATH 4.10.900.10 UniProtKB/Swiss-Prot
  Cadherins UniProtKB/Swiss-Prot
InterPro Cadherin UniProtKB/Swiss-Prot
  Cadherin-like_dom UniProtKB/Swiss-Prot
  Cadherin-like_sf UniProtKB/Swiss-Prot
  Cadherin_CS UniProtKB/Swiss-Prot
  Cadherin_cytoplasmic-dom UniProtKB/Swiss-Prot
  Catenin_binding_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:12560 UniProtKB/Swiss-Prot
MGD MGI:88356 ENTREZGENE
NCBI Gene 12560 ENTREZGENE
PANTHER CADHERIN-3 UniProtKB/Swiss-Prot
  PTHR24027 UniProtKB/Swiss-Prot
Pfam Cadherin UniProtKB/Swiss-Prot
  Cadherin_C UniProtKB/Swiss-Prot
PhenoGen Cdh3 PhenoGen
PRINTS CADHERIN UniProtKB/Swiss-Prot
PROSITE CADHERIN_1 UniProtKB/Swiss-Prot
  CADHERIN_2 UniProtKB/Swiss-Prot
SMART SM00112 UniProtKB/Swiss-Prot
Superfamily-SCOP SSF49313 UniProtKB/Swiss-Prot
UniProt CADH3_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q61465 ENTREZGENE
  Q80VY6 ENTREZGENE, UniProtKB/TrEMBL
  Q8BRE1 ENTREZGENE, UniProtKB/TrEMBL
  Q8BSL6 ENTREZGENE
UniProt Secondary Q61465 UniProtKB/Swiss-Prot
  Q8BSL6 UniProtKB/Swiss-Prot