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Gene: Cdhr2 (cadherin-related family member 2) Mus musculus

Analyze

Symbol:

Cdhr2

Name:

cadherin-related family member 2

RGD ID:

1617254

MGI Page

MGI

Description:

Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in several processes, including cell-cell adhesion mediated by cadherin; intermicrovillar adhesion; and negative regulation of cell growth involved in contact inhibition. Predicted to be located in apical plasma membrane; brush border membrane; and microvillus membrane. Predicted to be active in plasma membrane. Orthologous to human CDHR2 (cadherin related family member 2).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Gm624; PC-LKC; Pcdh2; Pcdh24; protocadherin 24; protocadherin LKC

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CDHR2 (cadherin related family member 2)	HGNC	EggNOG, Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Cdhr2 (cadherin-related family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Cdhr2 (cadherin related family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CDHR2 (cadherin related family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CDHR2 (cadherin related family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Cdhr2 (cadherin related family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CDHR2 (cadherin related family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CDHR2 (cadherin related family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Cdhr2 (cadherin related family member 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Rattus norvegicus (Norway rat):	Cdhr2 (cadherin-related family member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	CDHR2 (cadherin related family member 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	cdhr2 (cadherin related family member 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Cad88C	Alliance	DIOPT (Ensembl Compara\|InParanoid\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	cdhr2	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	54,849,276 - 54,884,475 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	54,849,274 - 54,884,475 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	54,701,463 - 54,736,662 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	54,701,461 - 54,736,662 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	54,802,824 - 54,838,023 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	54,711,085 - 54,746,277 (+)	NCBI		MGSCv36	mm8
Celera	13	55,767,386 - 55,802,298 (+)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	29.03	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chromosome 5, Trisomy 5q (ISO)

Ehlers-Danlos syndrome dermatosparaxis type (ISO)

Marfanoid Mental Retardation Syndrome, Autosomal (ISO)

Sotos syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3,4-methylenedioxymethamphetamine (EXP)

4,4'-sulfonyldiphenol (EXP)

4-hydroxyphenyl retinamide (EXP)

6-propyl-2-thiouracil (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (EXP,ISO)

benzo[e]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

chlorpyrifos (EXP)

chromium(6+) (EXP)

Cuprizon (ISO)

cyclosporin A (ISO)

dextran sulfate (EXP)

folic acid (EXP)

GW 4064 (EXP)

isoflurane (EXP)

methamphetamine (ISO)

methapyrilene (ISO)

mono(2-ethylhexyl) phthalate (EXP)

N-nitrosodiethylamine (EXP)

niclosamide (ISO)

paracetamol (ISO)

paraquat (ISO)

phenobarbital (EXP)

potassium dichromate (EXP)

resveratrol (ISO)

sodium arsenite (EXP)

thioacetamide (ISO)

tributylstannane (EXP)

trichloroethene (ISO)

triphenyl phosphate (ISO)

triptonide (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

brush border assembly (ISO)

cell adhesion (IBA)

cell-cell adhesion mediated by cadherin (ISO,ISS)

epithelial cell differentiation (ISO,ISS)

homophilic cell adhesion via plasma membrane adhesion molecules (IEA)

intermicrovillar adhesion (ISO,ISS)

negative regulation of cell growth involved in contact inhibition (ISO,ISS)

regulation of microvillus length (ISO,ISS)

Cellular Component

anchoring junction (IEA)

apical plasma membrane (ISO,ISS)

brush border (ISO)

brush border membrane (ISO,ISS)

microvillus (ISO)

microvillus membrane (ISO,ISS)

plasma membrane (IBA,ISO,ISS)

Molecular Function

calcium ion binding (IEA)

cell adhesion molecule binding (ISO,ISS)

protein binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal duodenum crypts of Lieberkuhn morphology (IAGP)

abnormal enterocyte morphology (IAGP)

abnormal enterocyte physiology (IAGP)

abnormal intestinal epithelium morphology (IAGP)

abnormal jejunum morphology (IAGP)

abnormal small intestinal microvillus morphology (IAGP)

decreased body weight (IAGP)

decreased small intestinal villus height (IAGP)

postnatal growth retardation (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:10349636	PMID:11042159	PMID:11076861	PMID:11217851	PMID:12466851	PMID:12477932	PMID:16141072	PMID:16141073	PMID:21267068	PMID:21873635	PMID:30403560	PMID:37832537
PMID:39292922

Genomics

Comparative Map Data

Cdhr2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	54,849,276 - 54,884,475 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	54,849,274 - 54,884,475 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	54,701,463 - 54,736,662 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	54,701,461 - 54,736,662 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	54,802,824 - 54,838,023 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	54,711,085 - 54,746,277 (+)	NCBI		MGSCv36	mm8
Celera	13	55,767,386 - 55,802,298 (+)	NCBI		Celera
Cytogenetic Map	13	B1	NCBI
cM Map	13	29.03	NCBI

CDHR2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	176,542,511 - 176,595,974 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	176,542,511 - 176,595,974 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	175,969,512 - 176,022,975 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	175,908,971 - 175,955,375 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	172,478,089 - 172,531,637 (-)	NCBI		Celera
Cytogenetic Map	5	q35.2	NCBI
HuRef	5	170,893,401 - 170,947,042 (+)	NCBI		HuRef
CHM1_1	5	175,402,210 - 175,455,196 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	177,087,074 - 177,142,566 (+)	NCBI		T2T-CHM13v2.0

Cdhr2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	9,881,979 - 9,917,698 (-)	NCBI		GRCr8
mRatBN7.2	17	9,876,853 - 9,913,356 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	9,876,860 - 9,912,575 (-)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	17	10,415,044 - 10,450,589 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	17	10,415,123 - 10,439,691 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	17	12,540,996 - 12,576,334 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	15,937,987 - 15,962,796 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	9,951,957 - 9,976,839 (-)	NCBI		Celera
Cytogenetic Map	17	p14	NCBI

Cdhr2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955408	28,832,325 - 28,875,534 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955408	28,832,362 - 28,871,345 (+)	NCBI	ChiLan1.0	ChiLan1.0

CDHR2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	4	171,630,262 - 171,676,130 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	5	169,769,801 - 169,815,669 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	171,846,538 - 171,893,797 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	178,916,707 - 178,963,944 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	178,916,707 - 178,964,893 (+)	Ensembl	panpan1.1		panPan2

CDHR2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	4	36,740,964 - 36,777,118 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	4	36,740,966 - 36,777,803 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	4	36,707,763 - 36,743,827 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	4	37,107,067 - 37,143,175 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	4	37,107,075 - 37,143,174 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	4	36,932,892 - 36,968,996 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	4	37,120,701 - 37,156,839 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	4	37,628,842 - 37,664,949 (-)	NCBI		UU_Cfam_GSD_1.0

Cdhr2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	121,785,575 - 121,831,018 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936597	831,855 - 857,013 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936597	831,895 - 855,925 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CDHR2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	81,318,407 - 81,361,606 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	81,319,179 - 81,361,598 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	82,920,844 - 82,963,238 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CDHR2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	78,571,170 - 78,602,699 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	78,571,792 - 78,602,552 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666075	9,688,711 - 9,736,431 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cdhr2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624733	13,535,809 - 13,576,940 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624733	13,537,363 - 13,582,390 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Cdhr2
1208 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	174
Count of miRNA genes:	169
Interacting mature miRNAs:	173
Transcripts:	ENSMUST00000037145
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1300561	Heal7_m	wound healing/regeneration 7 (mouse)			Not determined		13	36144820	70144904	Mouse
1357591	Tesq1_m	testis weight QTL 1 (mouse)			Not determined		13	20615512	55720517	Mouse
1301015	Sysbp2_m	systolic blood pressure 2 (mouse)			Not determined		13	20477612	59821605	Mouse
4142331	Bxs6_m	BXSB/MpJ autoimmune nephritis 6 (mouse)			Not determined			45210442	83744746	Mouse
12738439	Twq4_m	testis weight QTL 4 (mouse)					13	31129110	65129110	Mouse
4142009	Pregq3_m	pregnancy QTL 3 (mouse)			Not determined		13	20615512	72385189	Mouse
1357587	Pfat3_m	predicted fat percentage 3 (mouse)			Not determined		13	36101530	70101640	Mouse
10401111	Pgia40_m	proteoglycan induced arthritis 40 (mouse)			Not determined		13	27918469	61918560	Mouse
1300573	Elsgp2_m	elevated serum gp70 2 (mouse)			Not determined		13	50616828	84617027	Mouse
25671382	Hrsq4_m	host response to SARS QTL 4, vascular cuffing (mouse)					13	52881651	54992738	Mouse
10412109	Bxs7_m	BXSB/MpJ autoimmune nephritis 7 (mouse)			Not determined		13	45210442	83744746	Mouse
10412235	Scgq5_m	spontaneous crescentic glomerulonephritis QTL 5 (mouse)			Not determined		13	36060908	96239162	Mouse
10755517	Chol15_m	cholesterol 15 (mouse)					13	30969467	64969467	Mouse
4142372	Moo2_m	modifier of Odc2 (mouse)			Not determined		X	50318411	84318559	Mouse
15039353	Nmrs35_m	NAFLD-associated magnetic resonance shift 35 (mouse)					13	40588253	74588253	Mouse
1302157	Bwem2_m	body weight day 30 males 2 (mouse)			Not determined		13	39629249	73629397	Mouse
1301299	Sluc23_m	susceptibility to lung cancer 23 (mouse)			Not determined		13	34921943	68922081	Mouse
4142489	Ath25_m	atherosclerosis 25 (mouse)			Not determined			25836529	59836529	Mouse
10755533	Chol18_m	cholesterol 18 (mouse)					13	30969467	64969467	Mouse
1300985	Bmd13_m	bone mineral density 13 (mouse)			Not determined		13	39629249	73629397	Mouse
1302073	Pgct1_m	primordial germ cell tumor locus 1 (mouse)			Not determined		13	53820783	87820897	Mouse
10045621	Heal21_m	wound healing/regeneration 21 (mouse)			Not determined		13	28217379	62217515	Mouse
1300862	Cfbw5_m	cystic fibrosis body weight 5 (mouse)			Not determined		13	38720358	72720517	Mouse
1300668	Pas10_m	pulmonary adenoma susceptibility 10 (mouse)			Not determined		13	41489042	75489158	Mouse
1301666	Eae13_m	susceptibility to experimental allergic encephalomyelitis 13 (mouse)			Not determined		13	50318411	84318559	Mouse
26884393	Humsd7_m	humerus midshaft diameter 7, 16 week (mouse)					13	3950000	76048119	Mouse
1300710	Pcd4ts2_m	p-glycoprotein positive CD4 T cell subset 2 (mouse)			Not determined		13	28210442	62210544	Mouse
1301734	Acsns2_m	Angiostrongylus costaricensis nematode susceptibility 2 (mouse)			Not determined		13	36101530	70101640	Mouse
26884396	Humsd4_m	humerus midshaft diameter 4, 10 week (mouse)					13	47853476	73148119	Mouse
14696729	Kidlq2_m	kidney weight, left QTL 2 (mouse)					13	31344736	65344736	Mouse
1301801	Cpfd5_m	cerebellum pattern fissures (mouse)			Not determined		13	39629249	73629397	Mouse
4142147	Mvwf4_m	modifier of von Willebrand factor 4 (mouse)			Not determined			20477612	112898424	Mouse
1357802	Vtbt15_m	vertebral trabecular bone trait 15 (mouse)			Not determined		13	28217379	62217515	Mouse
14746975	Manh74_m	mandible shape 74 (mouse)					13	52477269	86477269	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001033364	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC162526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AEKQ02135325	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK144400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC034067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC040758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC141301	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC145624	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BX630481	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000037145 ⟹ ENSMUSP00000043596

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	54,849,274 - 54,884,475 (+)	Ensembl
GRCm38.p6 Ensembl	13	54,701,461 - 54,736,662 (+)	Ensembl

RefSeq Acc Id:

NM_001033364 ⟹ NP_001028536

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	13	54,849,276 - 54,884,475 (+)	NCBI
GRCm38	13	54,701,463 - 54,736,662 (+)	ENTREZGENE
MGSCv37	13	54,802,824 - 54,838,023 (+)	RGD
Celera	13	55,767,386 - 55,802,298 (+)	RGD
cM Map	13		ENTREZGENE

Sequence:

show sequence

GCCGGCCCCAGACGGCGCCCACCTGTGACTGGTGTACATCACTGCCTCTGGGCCCCTTCCAGGG
GCTGTCCAGATCAGCTGCTTCTGGGGGGGCTCTTAGCCCGAGGGTCCCTTCAAGATGGCCTGGC
TGTGGCTGCTTTGTGCACTGCTTCCTGCCTTCATGGTATCTGTGACAGCCAACTCGCCACCATC
ATTTGGGGTCAATATGACATTAGTAACCCTGCCAGAGGACTTACCAGTGGGTGCCGTGGCCTTC
TGGTTGGTGGCTACAGACAGTGATAATGACCACCTGACCTATGGAATCAGTGGCCCAAACGCCA
GCTACTTCTCCGTCAACGCGAACACTGGGGAAGTGAAGCTTGCCAGCCCTTTGGACTTTGAGAC
AGTTCCTTTCTTCAAGATCACCATCTCCACAAGTGATGGTCTCAACATCAGAACAGCCGAGATG
CAAGTGATTGTGGAAGACAGAAATGATAACATACCTGTTTTCCTGAACACTGAATTCTCCACCA
GCATCAATGAGACCCTGCCAGTCGGTTCTGTGGTGTTTTCTGTGCTGGCAGAGGACAAGGACAC
AGGGACAGCCGGTTTGGTGCAATATTTCATAGAGAAGGTCATCCCCAGCACCGCCAACAGCAAT
AATCTCTTCCGCATCCTGGAAAATGGCTCCATTGTACTGAATGACACGCTCAGTTACAACAACA
AGAGTGCCTTCTACCAGCTGGAGCTGAAGGCCTGTGACTCAGGGGGAATATTGGATAACAAGCC
AAAAACCCAATGCTCCCAGCCGGTCTTCGTATCCATCTCAGTGATTGATGAGCCAGACCTGGAC
CCTCGGTTTATCAGGGAGTTCTACTCAGCCTCTGTGGCTGAGGATGCCACCTTGGGGACGTCCG
TGCTGACCGTGGAGGCTGTGGACAGTGACAAAGGCATCAATGACATTGTGACCTACAGTGTCTC
CAACTCCACGAGGCCTGGGTGGTTCGACATCAGGGAAGATGGGGTCATCTTCGTCAATGGCTCC
CTGGACAGAGAGCAGCTGCTTCTGGAAAACGAAGAAGTGCAGATACAGGTCACGGCCACCGAGA
AGAATCTGAACATCTACGGGCAAGAGGCCAAGGCAAGCATGTGGGTCACAATAAGGGTGACAGA
TGTCAACGACCACAAGCCGGAATTTTACAACTGCAGCCTCCCTGGCTGCTCCTTTAGCCCCCAG
GAGGCCCAAGTCAACTTCATAGGCTACGTGGACGAGCATGCCTCTGCCCGAATCTCCATCGATG
GTCTGACCATGGTGGCCTATGATCCAGACCAGGGCGACAATGGTACCTTCCTGCTGTCCCTGAA
TGGCCAGGATGCTGAAGCCTTCAATGTGTCCCCAGAGCGAGCAGCAGGGTCTGTCAGTGTGCAG
GTGGTGGTGAGAAACTCAGAGATGGTGGACTATGAGAAGGAGACAGTGATGGTTGTGGAGGTTG
TGGCCACTGACTCAGTCAGCAACAACTACTCTGTTGCCACGGTGACCATCCACCTTAGAAACAT
CAATGACCACAGGCCTGTGTTCTCTCAGAGCCTGTATGAACTCACTGTGCCAGAGCACTGTCCA
ACAGGTTATCTGGTCACTGACAAAATCCAGGCTACAGACCTGGATGGGGATGAATGGGGTCCTA
TCACCTACAGTCTGCTTCCAGGAAATGGAGCTGACCTGTTTGAGGTGGAGCCAAACTCAGGGAA
TCTGACGGTGAAAAATGGCACGCTGCTGGACCGAGAGAAGCAGGCTGTGTACTACCTCACGCTG
CAGGCCACTGACGGTGGCAACCAGTCGACCACCACCGCCCTGGAGATCACTCTGCTGGATATCA
ATGACAACCCGCCTGTGGTCCGAGGCTCCTATAACGTCTTCGTGCCGGAGGAGAATGGCAATGT
CTCTGTGACCATCCAGGCCTATGATGATGACCAGCCAGACACTAACAACAGCCTCCTGGTCTTC
AGCCTGCTTCCTGGGCCCTACAGCAGCAACTTCTCCTTAGACCCCAACACAGGGCTCCTCAGGA
ATCTTGGGCCCCTGGACCGAGAGGCCATTGACCCTGCCCTGGAGGGACGCATCGTGCTAACTGT
GATTGTGGCTGACTGCGGCGAGCCTTCCCTGAGCACTAATGTCAATGTCACCATCACGGTAGAG
GACATCAATGACAACCTGCCTGTCTTCAACCAGTCTTATGAATTCTCTGTGTGGGAGAGAGTTC
CAGGAGCATGGGTGGGCACAGTGAAGGCCTGGGATGCTGACCAGACGGCAGCCAACAACCGCAT
CAGCTTCAGCTTGTCTGGGACTGGCGCCAACAATTTTATCCTCCAAGGCAACGTGCTGGAACAA
GGGTGGGCAGAGGGTAGCCTCTGGCTGCTCCCGGATGTGAGACTGGATTACGAGACACAGAAGT
TCTTCCACCTGACAGTGAGTGCTGAGAACCCAGGCCCCCAGGGCCTCGATTCTACAGCCAATGT
CACCGTCACGGTGATGGATGTGAATGATGAGCCGCCCACCCTGGATGCAGCCTCACTCCAGGCC
ATCTCTGTGACTGAGAATGGCTCTGAGCATGGCCAGGTGACTCGGGTGATAGCCCAGGATGTGG
ATACTGCTGCGTTGCTGAGGATAGAGCTGGTGGACGTCATCTGCACCAAGGCTGGGGTTGACGT
GGGCAGCGTGTGTCACGGCTGGTTCTCTGTGGATGGCAACGGCTCTGTGTACATCAATCAGAGT
GAGGCCATCGACTATGAGGCTTGTCACCTGGTCACGCTGGTCGTGCGGGCGTATGACCTCAACA
CGGATCCGGGCTTTGATGCTTACAGCAGCAATGGAAGCCTTCTCATCAACATCAAGGACAAGAA
TGACAATGCCCCCTATTTTCTGCCTAACAACCAGACCTTCGTGATCATCCCAGAGCTTGTGTTG
CCCAACCAGCAGGTGGCTTCTGTCCAGGCCAGAGATGAGGACTCAGAAGACAATGGGATCATCA
TGTTCTCCATCCTGAAAGCAGAATTTGTCCGCAAAGATGGAACTTCCAACCCTGTCCAGGTCTT
CCGGATTACCAGATCAGTGGAAGCTGGCCTGTTCACTGGCAGCATCGAGTTGGTGACCAACCTA
GATTCTACTATCCAAGGCACATACCAGGTGACAGTTCAGGCCCAAGATCAGCCCACATTGGGTC
CTGCCCTAGAGACACAGACCACTCTGAATCTCTTCACTGTGGACCAGAGTTACCGTGTGAGGCT
GCAGTTCTCCACCAGCAAGGAGGATGTTGGTGCCAATATGGAGGAGATCAAGGAGGCTCTTATC
CAGGCGACCAGAACCTCTGTCTACGTTGTGACCATCCAGAACATAGACTCTACGGCTCGGGCCC
GAGCCAGCTCCTACATGGACGCCTACTTTGTCTTTTCCAATGGGACAGCCCTGACACTCACTGA
GCTGAATATGATGATCCGGAAAGACCAGGATGCACTGAGGCAGCTGCTGCAACTGGGGCTGGTG
GTGGTGAGCTCCCAGGAGAGCCAGGAGCCCGATCAGCAGAAACTGCTCACCAGTGTCATCATAG
GACTGGTGGTGTCTTTGGTGCTGGTCCTTGTGATTTTGATTACGGCCCTTGTGTGTTTGCGGAA
GAGCTATCACCGGAAGCTTCGAGCTATGAAGGCTGGCAAGGAGGCCCGAAAGACACCAATAGAG
ACGACAGCTCCAACTGCTGCTATCCCAGGGACTAACATGTACAATACTGATCGGGCCAACCCCG
TGCTGGACCTCCCCACCAAGGATCTGGGCTTGGAGTGCCACTCCTCCAGTGACTTGGACTATGA
CAGCCTCAATTCCCTAGATGAGAACTCTGTGGACTTGGACATGGACAGTAAGGAATTCAAGAGG
AAGGATCTTCCAGGAGACCCTCCTGAGCCTGACCCTGAGCCCCTGACTGCAGTGCTCTCAGGAA
GGTCGGCAGGTGCGAGCGAACAGCAGAAAAAGAATCTGTCCTTCACCAACCCTGGCCTGGACAC
CACAGATCTGTGACGGAGCCTGTCATTCTTCGAGCTCAAACCGTACTGTCTGCCCTCCCCTAAA
ATATAATATATGGCCTTGCTTGTCAATCATAAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001028536	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH34067	(Get FASTA)	NCBI Sequence Viewer
	AAI41302	(Get FASTA)	NCBI Sequence Viewer
	AAI45625	(Get FASTA)	NCBI Sequence Viewer
	BAE25870	(Get FASTA)	NCBI Sequence Viewer
	E9Q7P9	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000043596
	ENSMUSP00000043596.8

RefSeq Acc Id:	NP_001028536 ⟸ NM_001033364
- Peptide Label:	precursor
- UniProtKB:	B9EJ32 (UniProtKB/Swiss-Prot), B7ZP46 (UniProtKB/Swiss-Prot), Q3UN77 (UniProtKB/Swiss-Prot), E9Q7P9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAWLWLLCALLPAFMVSVTANSPPSFGVNMTLVTLPEDLPVGAVAFWLVATDSDNDHLTYGISG PNASYFSVNANTGEVKLASPLDFETVPFFKITISTSDGLNIRTAEMQVIVEDRNDNIPVFLNTE FSTSINETLPVGSVVFSVLAEDKDTGTAGLVQYFIEKVIPSTANSNNLFRILENGSIVLNDTLS YNNKSAFYQLELKACDSGGILDNKPKTQCSQPVFVSISVIDEPDLDPRFIREFYSASVAEDATL GTSVLTVEAVDSDKGINDIVTYSVSNSTRPGWFDIREDGVIFVNGSLDREQLLLENEEVQIQVT ATEKNLNIYGQEAKASMWVTIRVTDVNDHKPEFYNCSLPGCSFSPQEAQVNFIGYVDEHASARI SIDGLTMVAYDPDQGDNGTFLLSLNGQDAEAFNVSPERAAGSVSVQVVVRNSEMVDYEKETVMV VEVVATDSVSNNYSVATVTIHLRNINDHRPVFSQSLYELTVPEHCPTGYLVTDKIQATDLDGDE WGPITYSLLPGNGADLFEVEPNSGNLTVKNGTLLDREKQAVYYLTLQATDGGNQSTTTALEITL LDINDNPPVVRGSYNVFVPEENGNVSVTIQAYDDDQPDTNNSLLVFSLLPGPYSSNFSLDPNTG LLRNLGPLDREAIDPALEGRIVLTVIVADCGEPSLSTNVNVTITVEDINDNLPVFNQSYEFSVW ERVPGAWVGTVKAWDADQTAANNRISFSLSGTGANNFILQGNVLEQGWAEGSLWLLPDVRLDYE TQKFFHLTVSAENPGPQGLDSTANVTVTVMDVNDEPPTLDAASLQAISVTENGSEHGQVTRVIA QDVDTAALLRIELVDVICTKAGVDVGSVCHGWFSVDGNGSVYINQSEAIDYEACHLVTLVVRAY DLNTDPGFDAYSSNGSLLINIKDKNDNAPYFLPNNQTFVIIPELVLPNQQVASVQARDEDSEDN GIIMFSILKAEFVRKDGTSNPVQVFRITRSVEAGLFTGSIELVTNLDSTIQGTYQVTVQAQDQP TLGPALETQTTLNLFTVDQSYRVRLQFSTSKEDVGANMEEIKEALIQATRTSVYVVTIQNIDST ARARASSYMDAYFVFSNGTALTLTELNMMIRKDQDALRQLLQLGLVVVSSQESQEPDQQKLLTS VIIGLVVSLVLVLVILITALVCLRKSYHRKLRAMKAGKEARKTPIETTAPTAAIPGTNMYNTDR ANPVLDLPTKDLGLECHSSSDLDYDSLNSLDENSVDLDMDSKEFKRKDLPGDPPEPDPEPLTAV LSGRSAGASEQQKKNLSFTNPGLDTTDL hide sequence

Ensembl Acc Id:

ENSMUSP00000043596 ⟸ ENSMUST00000037145

Protein Domains

Cadherin

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9Q7P9-F1-model_v2	AlphaFold	E9Q7P9	1-1308	view protein structure

Promoters

RGD ID:

8680402

Promoter ID:

EPDNEW_M18232

Type:

multiple initiation site

Name:

Cdhr2_1

Description:

Mus musculus cadherin-related family member 2 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	54,701,472 - 54,701,532	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2687323	AgrOrtholog
Ensembl Genes	ENSMUSG00000034918	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000037145	ENTREZGENE
	ENSMUST00000037145.8	UniProtKB/Swiss-Prot
Gene3D-CATH	Cadherins	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Cadherin	UniProtKB/Swiss-Prot
	Cadherin-like_dom	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cadherin-like_sf	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Cadherin_CS	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Protocadherin/Cadherin-CA	UniProtKB/TrEMBL
KEGG Report	mmu:268663	UniProtKB/Swiss-Prot
MGD	MGI:2687323	ENTREZGENE
NCBI Gene	268663	ENTREZGENE
PANTHER	CADHERIN-23	UniProtKB/Swiss-Prot
	CADHERIN-87A	UniProtKB/Swiss-Prot
	CADHERIN-87A	UniProtKB/TrEMBL
	CADHERIN-RELATED FAMILY MEMBER 2	UniProtKB/TrEMBL
Pfam	Cadherin	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Cdhr2	PhenoGen
PRINTS	CADHERIN	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE	CADHERIN_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CADHERIN_2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART	SM00112	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP	SSF49313	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	B7ZP46	ENTREZGENE
	B9EJ32	ENTREZGENE
	CDHR2_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q3UN77	ENTREZGENE
	Q8K066_MOUSE	UniProtKB/TrEMBL
UniProt Secondary	B7ZP46	UniProtKB/Swiss-Prot
	B9EJ32	UniProtKB/Swiss-Prot
	Q3UN77	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-07-27	Cdhr2	cadherin-related family member 2	Pcdh24	protocadherin 24	Symbol and/or name change	5135510	APPROVED

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype