Nup98 (nucleoporin 98) - Rat Genome Database

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Gene: Nup98 (nucleoporin 98) Mus musculus
Analyze
Symbol: Nup98
Name: nucleoporin 98
RGD ID: 1617247
MGI Page MGI
Description: Predicted to enable several functions, including molecular condensate scaffold activity; nuclear localization sequence binding activity; and promoter-specific chromatin binding activity. Predicted to be a structural constituent of nuclear pore. Predicted to be involved in several processes, including nucleocytoplasmic transport; positive regulation of mRNA splicing, via spliceosome; and post-transcriptional tethering of RNA polymerase II gene DNA at nuclear periphery. Located in nucleus. Is expressed in several structures, including nervous system; neural retina; and olfactory epithelium. Human ortholog(s) of this gene implicated in T-cell acute lymphoblastic leukemia. Orthologous to human NUP98 (nucleoporin 98 and 96 precursor).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4732457F17; AI849286; MGC118567; nuclear pore complex protein Nup98-Nup96; Nup; Nup96
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397101,768,607 - 101,859,359 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7101,768,605 - 101,859,383 (-)EnsemblGRCm39 Ensembl
GRCm387102,119,400 - 102,210,166 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7102,119,398 - 102,210,176 (-)EnsemblGRCm38mm10GRCm38
MGSCv377109,282,717 - 109,358,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367102,008,024 - 102,083,941 (-)NCBIMGSCv36mm8
Celera7102,501,532 - 102,578,156 (-)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.71NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-epigallocatechin 3-gallate  (ISO)
1-naphthyl isothiocyanate  (ISO)
2,2',4,4'-Tetrabromodiphenyl ether  (ISO)
2,3',4,4',5-Pentachlorobiphenyl  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,6-tribromophenol  (ISO)
2,4-dinitrotoluene  (ISO)
3,3',5,5'-tetrabromobisphenol A  (ISO)
3,4-methylenedioxymethamphetamine  (EXP)
3-chloropropane-1,2-diol  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
4,4'-sulfonyldiphenol  (ISO)
6-propyl-2-thiouracil  (ISO)
acrolein  (ISO)
aflatoxin B1  (ISO)
ammonium chloride  (ISO)
antirheumatic drug  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (EXP,ISO)
benzo[a]pyrene diol epoxide I  (ISO)
benzo[e]pyrene  (ISO)
beta-lapachone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (ISO)
C60 fullerene  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
cobalt dichloride  (ISO)
coumarin  (ISO)
Cuprizon  (ISO)
curcumin  (ISO)
decabromodiphenyl ether  (ISO)
deguelin  (ISO)
deoxynivalenol  (EXP)
dexamethasone  (ISO)
Dibutyl phosphate  (ISO)
disodium selenite  (ISO)
doxorubicin  (ISO)
enzyme inhibitor  (ISO)
ethanol  (ISO)
fenthion  (EXP)
formaldehyde  (ISO)
FR900359  (ISO)
gentamycin  (ISO)
indometacin  (ISO)
ivermectin  (ISO)
lead(0)  (ISO)
methapyrilene  (ISO)
methidathion  (EXP)
nickel atom  (ISO)
nickel sulfate  (ISO)
ozone  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (ISO)
potassium chromate  (ISO)
resveratrol  (EXP)
silicon dioxide  (EXP)
sodium arsenite  (ISO)
Soman  (ISO)
thapsigargin  (EXP)
titanium dioxide  (EXP)
triphenyl phosphate  (ISO)
trovafloxacin  (ISO)
tungsten  (EXP)
valproic acid  (ISO)
valsartan  (ISO)
zinc atom  (ISO)
zinc(0)  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Regulation of mRNA trafficking by nuclear pore complexes. Bonnet A and Palancade B, Genes (Basel). 2014 Sep 2;5(3):767-91. doi: 10.3390/genes5030767.
2. The (4;11)(q21;p15) translocation fuses the NUP98 and RAP1GDS1 genes and is recurrent in T-cell acute lymphocytic leukemia. Hussey DJ, etal., Blood. 1999 Sep 15;94(6):2072-9.
3. Postage for the messenger: designating routes for nuclear mRNA export. Natalizio BJ and Wente SR, Trends Cell Biol. 2013 Aug;23(8):365-73. doi: 10.1016/j.tcb.2013.03.006. Epub 2013 Apr 11.
4. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
5. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:8995226   PMID:9027506   PMID:10321731   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11106761   PMID:11217851   PMID:11248054   PMID:12032333   PMID:12466851  
PMID:12477932   PMID:12520002   PMID:12543865   PMID:12791264   PMID:12904583   PMID:14610273   PMID:15226823   PMID:15615787   PMID:15629720   PMID:16033648   PMID:16141072   PMID:16141073  
PMID:16355229   PMID:16546098   PMID:17442773   PMID:17545593   PMID:17967808   PMID:18539113   PMID:18799693   PMID:19000832   PMID:19581287   PMID:19841179   PMID:20335358   PMID:20360068  
PMID:20375145   PMID:21130494   PMID:21267068   PMID:21677750   PMID:21873635   PMID:22323452   PMID:22480613   PMID:22613470   PMID:23086144   PMID:23131583   PMID:24090997   PMID:24449168  
PMID:24943837   PMID:25737280   PMID:26202421   PMID:26496610   PMID:26510501   PMID:26731471   PMID:27889185   PMID:28392395   PMID:30683868   PMID:30700838   PMID:31077711   PMID:31427429  
PMID:32554809   PMID:32652111   PMID:34582559   PMID:37019383   PMID:37839992   PMID:38355793   PMID:38940430  


Genomics

Comparative Map Data
Nup98
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm397101,768,607 - 101,859,359 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl7101,768,605 - 101,859,383 (-)EnsemblGRCm39 Ensembl
GRCm387102,119,400 - 102,210,166 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl7102,119,398 - 102,210,176 (-)EnsemblGRCm38mm10GRCm38
MGSCv377109,282,717 - 109,358,634 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv367102,008,024 - 102,083,941 (-)NCBIMGSCv36mm8
Celera7102,501,532 - 102,578,156 (-)NCBICelera
Cytogenetic Map7E2NCBI
cM Map754.71NCBI
NUP98
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38113,675,010 - 3,797,554 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl113,671,083 - 3,797,792 (-)EnsemblGRCh38hg38GRCh38
GRCh37113,696,240 - 3,818,784 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36113,652,816 - 3,775,468 (-)NCBINCBI36Build 36hg18NCBI36
Build 34113,652,816 - 3,775,468NCBI
Celera113,701,320 - 3,824,093 (-)NCBICelera
Cytogenetic Map11p15.4NCBI
HuRef113,430,150 - 3,552,853 (-)NCBIHuRef
CHM1_1113,695,309 - 3,818,528 (-)NCBICHM1_1
T2T-CHM13v2.0113,740,382 - 3,862,891 (-)NCBIT2T-CHM13v2.0
Nup98
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81165,906,405 - 166,003,366 (-)NCBIGRCr8
mRatBN7.21156,494,423 - 156,591,415 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1156,494,423 - 156,591,415 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1164,472,406 - 164,569,303 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01171,652,494 - 171,749,393 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01164,530,067 - 164,627,102 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01167,213,866 - 167,308,851 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1167,213,866 - 167,308,851 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01173,402,761 - 173,497,459 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41159,598,048 - 159,696,720 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11159,712,571 - 159,775,713 (-)NCBI
Celera1154,562,755 - 154,659,380 (-)NCBICelera
Cytogenetic Map1q32NCBI
Nup98
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541419,499,406 - 19,607,075 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541419,499,577 - 19,607,075 (-)NCBIChiLan1.0ChiLan1.0
NUP98
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v295,940,414 - 6,063,306 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1115,179,925 - 5,302,842 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0113,553,379 - 3,669,367 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1113,660,482 - 3,782,552 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl113,661,568 - 3,767,443 (-)Ensemblpanpan1.1panPan2
NUP98
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12126,231,585 - 26,348,019 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2126,220,963 - 26,336,020 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2126,000,857 - 26,119,031 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02126,440,102 - 26,558,550 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2126,440,111 - 26,558,538 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12126,231,727 - 26,349,986 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02126,447,562 - 26,565,737 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02126,349,660 - 26,468,000 (-)NCBIUU_Cfam_GSD_1.0
Nup98
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494759,513,173 - 59,620,245 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364981,112,663 - 1,220,634 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364981,112,724 - 1,219,790 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NUP98
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl96,319,650 - 6,419,660 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.196,319,616 - 6,419,652 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.297,103,733 - 7,180,578 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NUP98
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1162,924,514 - 63,050,060 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl162,925,050 - 63,050,111 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604362,849,965 - 62,977,060 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nup98
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248175,123,977 - 5,245,286 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248175,125,658 - 5,245,453 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Nup98
4117 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:103
Count of miRNA genes:87
Interacting mature miRNAs:99
Transcripts:ENSMUST00000070165
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357460Vtbt4_mvertebral trabecular bone trait 4 (mouse)Not determined7101693381135693530Mouse
25314307Mlh1fc2_mMLH1 foci count 2 (mouse)76502999133501729Mouse
27226781Tibl3_mtibia length 3, 5 week (mouse)774849748122199223Mouse
25314305Vmm6_mvariable multisystem mineralization 6, eye (mouse)761849748102749207Mouse
27226778Femd11_mfemur midshaft diameter 11, 16 week (mouse)756949748134001729Mouse
1301781Capsq3_mcapsaicin sensitivity related QTL 3 (mouse)Not determined787143137119485380Mouse
14746989Manh62_mmandible shape 62 (mouse)775742528109742528Mouse
11039524Tbbr3_mTrypanosoma brucei brucei response 3 (mouse)7100750722134750843Mouse
27226769Tibl12_mtibia length 12, 10 week (mouse)787249208126499172Mouse
10043926Bw1n_mbody weight 1 in NSY (mouse)Not determined745161966118693530Mouse
27226765Tibl18_mtibia length 18, 16 week (mouse)781849748126499172Mouse
27226763Feml20_mfemur length 20, 16 week (mouse)785049208124199223Mouse
4142500Morq1_mmodifier of Rs1 QTL 1 (mouse)Not determined80551681114551791Mouse
1301647Elpt_melevated leptin (mouse)Not determined786500186120500329Mouse
13208555Lgth10_mbody length 10 (mouse)751649748125599172Mouse
26884408Bzwq13_mbi-zygomatic width QTL 13, 16 week (mouse)761749748121399223Mouse
1301937Skull10_mskull morphology 10 (mouse)Not determined791482996125483156Mouse
1300528Ssial3_msusceptibility to sialadenitis 3 (mouse)Not determined793391848127392041Mouse
1300791Abbp3_mA/J and C57BL/6 blood pressure 3 (mouse)Not determined739673887103510010Mouse
1301566Adip3_madiposity 3 (mouse)Not determined775394215109394346Mouse
26884404Huml1_mhumerus length 1, 5 week (mouse)730199425108999207Mouse
1301155Bpq7_mblood pressure QTL 7 (mouse)Not determined770143137104143379Mouse
26884398Humsd6_mhumerus midshaft diameter 6, 16 week (mouse)778649748136901729Mouse
1301158Eae4_msusceptibility to experimental allergic encephalomyelitis 4 (mouse)Not determined719147398141919804Mouse
10412199Sst2_msusceptibility to tuberculosis 2 (mouse)Not determined718728794119485380Mouse
27226790Feml15_mfemur length 15, 10 week (mouse)787249208126499172Mouse
13524850Asrq7_macoustic startle response 7 (mouse)798394974132394974Mouse
1300654Bomd1_mbone mineral density 1 (mouse)Not determined768365595102365702Mouse
1302062Stheal6_msoft tissue heal 6 (mouse)Not determined787043932121044066Mouse
26884440Sklq4_mskull length QTL 4, 5 week (mouse)765249748126499172Mouse
27095903Scvln10_msacral vertebrae length 2, 10 week (mouse)781449748126499172Mouse
27226715Metcl3_mmetatarsal-calcaneal length 3, 5 week (mouse)767849748119499223Mouse
26884444Sklq8_mskull length QTL 8, 10 week (mouse)767849748124199223Mouse
25823170Hrsq7_mhost response to SARS QTL 7, log titer (mouse)754819589116822815Mouse
1301082Bbaa16_mB.burgdorferi-associated arthritis 16 (mouse)Not determined736280015116416877Mouse
10412110Cctq1_mcentral corneal thickness QTL 1 (mouse)Not determined780551681114551791Mouse
12792978Fbmd3_mfemoral bone mineral density 3, females only (mouse)77050288142367832Mouse
1301447Fembm3_mfemoral bone morphometry 3 (mouse)Not determined7100993261134993342Mouse
10412104Tons2_mtongue size 2 (mouse)Not determined799837716133837716Mouse
1301188Heal6_mwound healing/regeneration 6 (mouse)Not determined787043932121044066Mouse
26884418Bzwq7_mbi-zygomatic width QTL 7, 10 week (mouse)767849748105449207Mouse
10043973Obq29_mobesity QTL 29 (mouse)Not determined772263372106263372Mouse
27226751Femd5_mfemur midshaft diameter 5, 10 week (mouse)753249748143153737Mouse
27095933Ulnl3_mulna length 3, 5 week (mouse)773149748143153737Mouse
1301105Cfld4_mcystic fibrosis lung disease 4 (mouse)Not determined7101693381135693530Mouse
1300721Cfbw3_mcystic fibrosis body weight 3 (mouse)Not determined7101693381135693530Mouse
27095929Pglq8_mpelvic girdle length QTL 8, 10 week (mouse)787849208108099207Mouse
27226745Metcl9_mmetatarsal-calcaneal length 9, 10 week (mouse)774849748122199223Mouse
27095930Ulnl10_mulna length 10, 16 week (mouse)780849748126699172Mouse
27095923Pglq3_mpelvic girdle length QTL 3, 5 week (mouse)781249748124199223Mouse
27095916Scvln15_msacral vertebrae length 2, 16 week (mouse)761749748123699223Mouse
13464255Ifvrq2_minfluenza virus resistance QTL 2 (mouse)792500698106455693Mouse
1357664Nba3_mNew Zealand Black autoimmunity 3 (mouse)Not determined791482996125483156Mouse
1301478Eae26_msusceptibility to experimental allergic encephalomyelitis 26 (mouse)Not determined798164922132165010Mouse
26884451Sklq14_mskull length QTL 14, 16 week (mouse)767849748124999172Mouse
27095910Pglq13_mpelvic girdle length QTL 13, 16 week (mouse)773049748125699172Mouse
13463473Hbbcq4_mhemoglobin concentration QTL 4 (mouse)787043932121044066Mouse
11553869Stmm2b_mskin tumor modifier of MSM 2a (mouse)773725965107725965Mouse
27095907Scvln4_msacral vertebrae length 2, 5 week (mouse)769949748120499223Mouse
1301997Cia7_mcollagen induced arthritis QTL 7 (mouse)Not determined785365595112533819Mouse

Markers in Region
AI849286  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387102,119,592 - 102,119,729UniSTSGRCm38
MGSCv377109,268,106 - 109,268,243UniSTSGRCm37
Celera7102,486,655 - 102,486,792UniSTS
Cytogenetic Map7E2UniSTS
cM Map751.5UniSTS
Whitehead/MRC_RH71036.78UniSTS
Nup98  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7E2UniSTS
cM Map751.5UniSTS
D9Mit34.1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map7F1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map2C1.3UniSTS
Cytogenetic Map19D1UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11B4UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map1C1.3UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map2E2UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map1E3UniSTS
Cytogenetic Map5E1UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map16B3UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map19D3UniSTS
Cytogenetic Map1H5UniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map9DUniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map17DUniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map13A1UniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map12A3UniSTS
Cytogenetic Map1H2.1UniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map6A2UniSTS
Cytogenetic Map7B1UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map5C3.1UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map11B1.1UniSTS
Cytogenetic Map1H6UniSTS
Cytogenetic Map2C2UniSTS
Cytogenetic Map19CUniSTS
Cytogenetic Map17E1.3UniSTS
Cytogenetic Map5A1UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map13A5UniSTS
Cytogenetic MapXA1.1UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map3A3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map8CUniSTS
Cytogenetic Map12EUniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map1H1UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map1A2UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXC-DUniSTS
Cytogenetic Map5G1.3UniSTS
Cytogenetic Map7D1-E2UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map1H2.2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map16C1.1UniSTS
Cytogenetic Map15F2UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map1H4-H6UniSTS
Cytogenetic Map12D2UniSTS
Cytogenetic Map1G3UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map1H3UniSTS
Cytogenetic Map19BUniSTS
cM Map950.0UniSTS
Whitehead Genetic943.7UniSTS
UniSTS:235727  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm387102,119,901 - 102,119,986UniSTSGRCm38
MGSCv377109,268,415 - 109,268,500UniSTSGRCm37
Celera7102,486,964 - 102,487,049UniSTS
Cytogenetic Map7E2UniSTS
cM Map751.5UniSTS
D10Mit157.2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6D1UniSTS
Cytogenetic Map16B4UniSTS
Cytogenetic Map18E2UniSTS
Cytogenetic Map4C3UniSTS
Cytogenetic Map7B2UniSTS
Cytogenetic Map4D2.3UniSTS
Cytogenetic Map11E1UniSTS
Cytogenetic Map14E2.2UniSTS
Cytogenetic Map4C7UniSTS
Cytogenetic Map2H4UniSTS
Cytogenetic Map1FUniSTS
Cytogenetic Map6C3UniSTS
Cytogenetic Map11DUniSTS
Cytogenetic Map3G2UniSTS
Cytogenetic Map17A1UniSTS
Cytogenetic Map9F2UniSTS
Cytogenetic Map12F1UniSTS
Cytogenetic Map19C2UniSTS
Cytogenetic Map3BUniSTS
Cytogenetic Map8C1UniSTS
Cytogenetic Map18A2UniSTS
Cytogenetic Map3F2UniSTS
Cytogenetic Map14C3UniSTS
Cytogenetic Map8E1UniSTS
Cytogenetic Map8E2UniSTS
Cytogenetic Map5B1UniSTS
Cytogenetic Map18B1UniSTS
Cytogenetic Map9CUniSTS
Cytogenetic Map14C2UniSTS
Cytogenetic Map6A1UniSTS
Cytogenetic Map10B4UniSTS
Cytogenetic Map13D2.1UniSTS
Cytogenetic Map5E5UniSTS
Cytogenetic Map11B1.3UniSTS
Cytogenetic Map4D1UniSTS
Cytogenetic Map9A5.2UniSTS
Cytogenetic Map3F1UniSTS
Cytogenetic Map17E3UniSTS
Cytogenetic Map11B3UniSTS
Cytogenetic Map1H4UniSTS
Cytogenetic Map6A3UniSTS
Cytogenetic Map5E4-E5UniSTS
Cytogenetic Map15E1UniSTS
Cytogenetic Map13DUniSTS
Cytogenetic Map14BUniSTS
Cytogenetic Map14D1UniSTS
Cytogenetic Map7B4UniSTS
Cytogenetic Map8D3UniSTS
Cytogenetic MapXDUniSTS
Cytogenetic Map17A3.3UniSTS
Cytogenetic Map7E2UniSTS
Cytogenetic Map1H2.3UniSTS
Cytogenetic Map7A2UniSTS
Cytogenetic Map7F3UniSTS
Cytogenetic Map9F1UniSTS
Cytogenetic Map10C1UniSTS
Cytogenetic Map4E2UniSTS
Cytogenetic Map16A1UniSTS
Cytogenetic Map8B3.3UniSTS
Cytogenetic Map8D2UniSTS
Cytogenetic Map3DUniSTS
Cytogenetic Map15D2UniSTS
Cytogenetic Map17B1UniSTS
Cytogenetic Map7A3UniSTS
Cytogenetic Map15F1UniSTS
Cytogenetic Map16B2UniSTS
Cytogenetic Map7CUniSTS
Cytogenetic Map3F2.1UniSTS
Cytogenetic Map6F3UniSTS
Cytogenetic Map1C4UniSTS
Cytogenetic Map11E2UniSTS
Cytogenetic Map11B5UniSTS
Cytogenetic Map9F3UniSTS
Cytogenetic Map2BUniSTS
Cytogenetic Map13B3UniSTS
Cytogenetic Map9A4UniSTS
Cytogenetic Map5A3UniSTS
Cytogenetic Map2H1UniSTS
Cytogenetic Map16B1UniSTS
Cytogenetic Map1A5UniSTS
Cytogenetic Map11CUniSTS
Cytogenetic Map9E1UniSTS
Cytogenetic Map6G1UniSTS
Cytogenetic MapXA2UniSTS
Cytogenetic Map13B1UniSTS
Cytogenetic Map5E2UniSTS
Cytogenetic Map12C1UniSTS
Cytogenetic Map5FUniSTS
Cytogenetic Map4D3UniSTS
Cytogenetic Map10C2UniSTS
Cytogenetic Map9BUniSTS
Cytogenetic Map5G2UniSTS
Cytogenetic Map7F1UniSTS
Cytogenetic Map12C3UniSTS
Cytogenetic Map10A4UniSTS
Cytogenetic Map8A2UniSTS
Cytogenetic Map18A1UniSTS
Cytogenetic Map12A1.1UniSTS
Cytogenetic Map1C2UniSTS
Cytogenetic Map11B2UniSTS
Cytogenetic Map6E3UniSTS
Cytogenetic Map5C3.3UniSTS
Cytogenetic Map1BUniSTS
Cytogenetic Map17A3.1UniSTS
Cytogenetic Map7A1UniSTS
Cytogenetic Map2E5UniSTS
Cytogenetic Map11A1UniSTS
Cytogenetic Map4B1UniSTS
Cytogenetic Map15A2UniSTS
Cytogenetic Map8C3UniSTS
Cytogenetic Map2A3UniSTS
Cytogenetic Map5G3UniSTS
Cytogenetic Map4A3UniSTS
Cytogenetic Map2H3UniSTS
Cytogenetic Map8A1UniSTS
Cytogenetic Map8A1.1UniSTS
Cytogenetic Map16A3UniSTS
Cytogenetic Map10B1UniSTS
Cytogenetic Map19AUniSTS
Cytogenetic Map10A1UniSTS
Cytogenetic Map13D1UniSTS
Cytogenetic Map4A1UniSTS
Cytogenetic Map9A3UniSTS
Cytogenetic Map17CUniSTS
Cytogenetic Map1DUniSTS
Cytogenetic Map5E3UniSTS
Cytogenetic Map15D3UniSTS
Cytogenetic Map2H2UniSTS
Cytogenetic Map7D3UniSTS
Cytogenetic Map2A1UniSTS
Cytogenetic Map14C1UniSTS
Cytogenetic Map14E5UniSTS
Cytogenetic Map10CUniSTS
Cytogenetic Map18B2UniSTS
Cytogenetic Map2F1UniSTS
Cytogenetic Map10D3UniSTS
Cytogenetic Map17A2UniSTS
Cytogenetic Map2C3UniSTS
Cytogenetic Map1C3UniSTS
Cytogenetic Map17B2UniSTS
Cytogenetic Map5B2UniSTS
Cytogenetic Map5G1UniSTS
Cytogenetic Map4C6UniSTS
Cytogenetic Map13C3UniSTS
Cytogenetic Map2E1UniSTS
Cytogenetic Map17A3.2-A3.3UniSTS
Cytogenetic Map19C3UniSTS
Cytogenetic Map7E3UniSTS
Cytogenetic Map13C1UniSTS
Cytogenetic Map9E3.1UniSTS
Cytogenetic Map15E3UniSTS
Cytogenetic Map6B1UniSTS
Cytogenetic MapXE3UniSTS
Cytogenetic Map4C4UniSTS
Cytogenetic Map3E3UniSTS
Cytogenetic Map11A4UniSTS
Cytogenetic Map4C5UniSTS
Cytogenetic Map18B3UniSTS
Cytogenetic Map9A2UniSTS
Cytogenetic Map7E1UniSTS
Cytogenetic Map5D-E1UniSTS
Cytogenetic Map5B3UniSTS
Cytogenetic Map13A2-A3UniSTS
Cytogenetic Map5A2UniSTS
Cytogenetic Map4B3UniSTS
Cytogenetic Map1E4UniSTS
Cytogenetic Map17E4UniSTS
Cytogenetic Map1G2UniSTS
Cytogenetic Map15B3.1UniSTS
Cytogenetic Map12EUniSTS
Cytogenetic MapXA5UniSTS
Cytogenetic Map6A3.3UniSTS
Cytogenetic Map6G3UniSTS
Cytogenetic Map6F2UniSTS
Cytogenetic Map5C1UniSTS
Cytogenetic Map4D2.1UniSTS
Cytogenetic Map4A5UniSTS
Cytogenetic Map3F2.2UniSTS
Cytogenetic Map1E3-E4UniSTS
Cytogenetic Map9F1-F3UniSTS
Cytogenetic Map1C1.1UniSTS
Cytogenetic Map14D2UniSTS
Cytogenetic Map12A2UniSTS
Cytogenetic Map17A3-BUniSTS
Cytogenetic Map7F5UniSTS
Cytogenetic Map14A3UniSTS
Cytogenetic Map5G1.1UniSTS
Cytogenetic MapXF2-F4UniSTS
Cytogenetic Map7D2UniSTS
Cytogenetic Map2F3UniSTS
Cytogenetic Map10A3UniSTS
Cytogenetic MapXA7.3UniSTS
Cytogenetic Map9F1-F2UniSTS
Cytogenetic Map13A3.2UniSTS
Cytogenetic Map10A2UniSTS
Cytogenetic Map1C1UniSTS
Cytogenetic Map1A1UniSTS
Cytogenetic Map12D3UniSTS
Cytogenetic Map1A3-A5UniSTS
Cytogenetic Map2A2UniSTS
Cytogenetic Map3A1UniSTS
Cytogenetic MapXA3.3UniSTS
Cytogenetic Map16A-B1UniSTS
Cytogenetic Map1D2.3UniSTS
Cytogenetic Map6B2.3UniSTS
Cytogenetic Map2G3UniSTS
Cytogenetic MapXA2-A3.1UniSTS
Cytogenetic Map9A5.3UniSTS
Cytogenetic Map14A2-BUniSTS
Cytogenetic Map8E1-E2UniSTS
Cytogenetic Map8A3UniSTS
Cytogenetic Map1G3-H1UniSTS
Cytogenetic Map8B3-C1UniSTS
Cytogenetic Map19C1UniSTS
Cytogenetic Map8C5UniSTS
Cytogenetic Map8A4UniSTS
Cytogenetic Map15F3UniSTS
Cytogenetic Map14E4UniSTS
Cytogenetic Map4D2.2UniSTS
Cytogenetic MapXF5UniSTS
cM Map1040.0UniSTS
Whitehead Genetic1033.9UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001287164 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287165 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287166 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001287167 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404134 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404136 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404137 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404138 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404139 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404140 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001404141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_022979 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC118592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF201386 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK028800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK076584 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK089973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK137234 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK146491 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164402 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK164743 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK172207 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC037506 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC039912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC050911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC057608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC078630 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC099600 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC112912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC137975 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC145071 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000070165   ⟹   ENSMUSP00000068530
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7101,783,410 - 101,859,327 (-)Ensembl
GRCm38.p6 Ensembl7102,134,203 - 102,210,120 (-)Ensembl
Ensembl Acc Id: ENSMUST00000209242
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7101,827,489 - 101,844,211 (-)Ensembl
GRCm38.p6 Ensembl7102,178,282 - 102,195,004 (-)Ensembl
Ensembl Acc Id: ENSMUST00000210682   ⟹   ENSMUSP00000148115
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7101,768,605 - 101,859,383 (-)Ensembl
GRCm38.p6 Ensembl7102,119,398 - 102,210,176 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211005   ⟹   ENSMUSP00000147445
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7101,793,753 - 101,859,074 (-)Ensembl
GRCm38.p6 Ensembl7102,144,546 - 102,209,867 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211022   ⟹   ENSMUSP00000147454
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7101,794,535 - 101,859,357 (-)Ensembl
GRCm38.p6 Ensembl7102,145,328 - 102,210,150 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211235   ⟹   ENSMUSP00000147486
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7101,783,685 - 101,859,349 (-)Ensembl
GRCm38.p6 Ensembl7102,134,478 - 102,210,142 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211375
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7101,841,556 - 101,859,352 (-)Ensembl
GRCm38.p6 Ensembl7102,192,349 - 102,210,145 (-)Ensembl
Ensembl Acc Id: ENSMUST00000211764   ⟹   ENSMUSP00000147807
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl7101,801,583 - 101,832,772 (-)Ensembl
GRCm38.p6 Ensembl7102,152,376 - 102,183,565 (-)Ensembl
RefSeq Acc Id: NM_001287164   ⟹   NP_001274093
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,768,607 - 101,859,353 (-)NCBI
GRCm387102,119,400 - 102,210,166 (-)NCBI
Celera7102,486,463 - 102,578,202 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001287165   ⟹   NP_001274094
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,783,406 - 101,859,353 (-)NCBI
GRCm387102,134,186 - 102,210,166 (-)NCBI
Celera7102,486,463 - 102,578,202 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001287166   ⟹   NP_001274095
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,793,761 - 101,859,353 (-)NCBI
GRCm387102,144,546 - 102,210,166 (-)NCBI
Celera7102,486,463 - 102,578,202 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001287167   ⟹   NP_001274096
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,793,761 - 101,859,083 (-)NCBI
GRCm387102,144,546 - 102,209,867 (-)NCBI
Celera7102,486,463 - 102,578,202 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001404134   ⟹   NP_001391063
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,768,607 - 101,859,083 (-)NCBI
RefSeq Acc Id: NM_001404135   ⟹   NP_001391064
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,768,607 - 101,859,353 (-)NCBI
RefSeq Acc Id: NM_001404136   ⟹   NP_001391065
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,768,607 - 101,859,353 (-)NCBI
RefSeq Acc Id: NM_001404137   ⟹   NP_001391066
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,783,406 - 101,859,083 (-)NCBI
RefSeq Acc Id: NM_001404138   ⟹   NP_001391067
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,783,406 - 101,859,353 (-)NCBI
RefSeq Acc Id: NM_001404139   ⟹   NP_001391068
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,783,406 - 101,859,353 (-)NCBI
RefSeq Acc Id: NM_001404140   ⟹   NP_001391069
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,793,761 - 101,859,353 (-)NCBI
RefSeq Acc Id: NM_001404141   ⟹   NP_001391070
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,793,761 - 101,859,353 (-)NCBI
RefSeq Acc Id: NM_022979   ⟹   NP_075355
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,783,406 - 101,859,353 (-)NCBI
GRCm387102,134,186 - 102,210,166 (-)NCBI
MGSCv377109,282,717 - 109,358,634 (-)RGD
Celera7102,486,463 - 102,578,202 (-)NCBI
cM Map7 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006507895   ⟹   XP_006507958
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,768,607 - 101,859,117 (-)NCBI
GRCm387102,119,400 - 102,209,910 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006507897   ⟹   XP_006507960
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm397101,768,607 - 101,859,359 (-)NCBI
GRCm387102,119,400 - 102,210,152 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001274093 (Get FASTA)   NCBI Sequence Viewer  
  NP_001274094 (Get FASTA)   NCBI Sequence Viewer  
  NP_001274095 (Get FASTA)   NCBI Sequence Viewer  
  NP_001274096 (Get FASTA)   NCBI Sequence Viewer  
  NP_001391063 (Get FASTA)   NCBI Sequence Viewer  
  NP_001391064 (Get FASTA)   NCBI Sequence Viewer  
  NP_001391065 (Get FASTA)   NCBI Sequence Viewer  
  NP_001391066 (Get FASTA)   NCBI Sequence Viewer  
  NP_001391067 (Get FASTA)   NCBI Sequence Viewer  
  NP_001391068 (Get FASTA)   NCBI Sequence Viewer  
  NP_001391069 (Get FASTA)   NCBI Sequence Viewer  
  NP_001391070 (Get FASTA)   NCBI Sequence Viewer  
  NP_075355 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507958 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507960 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAG42323 (Get FASTA)   NCBI Sequence Viewer  
  AAH50911 (Get FASTA)   NCBI Sequence Viewer  
  AAH57608 (Get FASTA)   NCBI Sequence Viewer  
  AAH78630 (Get FASTA)   NCBI Sequence Viewer  
  AAH99600 (Get FASTA)   NCBI Sequence Viewer  
  AAI12913 (Get FASTA)   NCBI Sequence Viewer  
  AAI37976 (Get FASTA)   NCBI Sequence Viewer  
  AAI45072 (Get FASTA)   NCBI Sequence Viewer  
  BAE27210 (Get FASTA)   NCBI Sequence Viewer  
  BAE37773 (Get FASTA)   NCBI Sequence Viewer  
  BAE37897 (Get FASTA)   NCBI Sequence Viewer  
  EDL16582 (Get FASTA)   NCBI Sequence Viewer  
  EDL16583 (Get FASTA)   NCBI Sequence Viewer  
  EDL16584 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000068530
  ENSMUSP00000068530.6
  ENSMUSP00000147445
  ENSMUSP00000147445.2
  ENSMUSP00000147454
  ENSMUSP00000147454.2
  ENSMUSP00000147486
  ENSMUSP00000147486.2
  ENSMUSP00000147807.2
  ENSMUSP00000148115
  ENSMUSP00000148115.2
GenBank Protein Q6PFD9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_075355   ⟸   NM_022979
- Peptide Label: isoform 2
- UniProtKB: A0A140T8J8 (UniProtKB/TrEMBL),   B7ZN81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274093   ⟸   NM_001287164
- Peptide Label: isoform 1 precursor
- UniProtKB: Q6PFD9 (UniProtKB/Swiss-Prot),   Q68G59 (UniProtKB/Swiss-Prot),   A0A1B0GSX7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274094   ⟸   NM_001287165
- Peptide Label: isoform 3
- UniProtKB: B2RQL0 (UniProtKB/TrEMBL),   B7ZN81 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274095   ⟸   NM_001287166
- Peptide Label: isoform 4
- UniProtKB: A0A1B0GRB5 (UniProtKB/TrEMBL),   Q3UJE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001274096   ⟸   NM_001287167
- Peptide Label: isoform 5
- UniProtKB: A0A1B0GRA7 (UniProtKB/TrEMBL),   Q3UJE5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507960   ⟸   XM_006507897
- Peptide Label: isoform X3
- UniProtKB: Q6PFD9 (UniProtKB/Swiss-Prot),   Q68G59 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006507958   ⟸   XM_006507895
- Peptide Label: isoform X1
- UniProtKB: Q6PFD9 (UniProtKB/Swiss-Prot),   Q68G59 (UniProtKB/Swiss-Prot),   A0A1B0GSX7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000068530   ⟸   ENSMUST00000070165
Ensembl Acc Id: ENSMUSP00000147807   ⟸   ENSMUST00000211764
Ensembl Acc Id: ENSMUSP00000147486   ⟸   ENSMUST00000211235
Ensembl Acc Id: ENSMUSP00000147454   ⟸   ENSMUST00000211022
Ensembl Acc Id: ENSMUSP00000147445   ⟸   ENSMUST00000211005
Ensembl Acc Id: ENSMUSP00000148115   ⟸   ENSMUST00000210682
RefSeq Acc Id: NP_001391065   ⟸   NM_001404136
- Peptide Label: isoform 7
- UniProtKB: Q6PFD9 (UniProtKB/Swiss-Prot),   Q68G59 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001391064   ⟸   NM_001404135
- Peptide Label: isoform 6
- UniProtKB: Q6PFD9 (UniProtKB/Swiss-Prot),   Q68G59 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001391063   ⟸   NM_001404134
- Peptide Label: isoform 6
- UniProtKB: Q6PFD9 (UniProtKB/Swiss-Prot),   Q68G59 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001391068   ⟸   NM_001404139
- Peptide Label: isoform 9
- UniProtKB: B7ZN81 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001391067   ⟸   NM_001404138
- Peptide Label: isoform 8
- UniProtKB: B7ZN81 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001391066   ⟸   NM_001404137
- Peptide Label: isoform 3
- UniProtKB: B2RQL0 (UniProtKB/TrEMBL),   B7ZN81 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001391070   ⟸   NM_001404141
- Peptide Label: isoform 10
- UniProtKB: Q3UJE5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001391069   ⟸   NM_001404140
- Peptide Label: isoform 5
- UniProtKB: A0A1B0GRA7 (UniProtKB/TrEMBL),   Q3UJE5 (UniProtKB/TrEMBL)
Protein Domains
Peptidase S59

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6PFD9-F1-model_v2 AlphaFold Q6PFD9 1-1816 view protein structure

Promoters
RGD ID:8665019
Promoter ID:EPDNEW_M10541
Type:initiation region
Name:Nup98_1
Description:Mus musculus nucleoporin 98 , transcript variant 4, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm387102,210,146 - 102,210,206EPDNEW
RGD ID:6841161
Promoter ID:MM_KWN:51830
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000096648,   ENSMUST00000120879,   NM_022979,   OTTMUST00000075625,   OTTMUST00000075626,   OTTMUST00000075627,   OTTMUST00000075628,   OTTMUST00000076306,   UC009IQZ.1,   UC009IRA.1,   UC009IRC.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv367109,358,231 - 109,359,227 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:109404 AgrOrtholog
Ensembl Genes ENSMUSG00000063550 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000070165 ENTREZGENE
  ENSMUST00000070165.7 UniProtKB/TrEMBL
  ENSMUST00000210682 ENTREZGENE
  ENSMUST00000210682.2 UniProtKB/TrEMBL
  ENSMUST00000211005 ENTREZGENE
  ENSMUST00000211005.2 UniProtKB/TrEMBL
  ENSMUST00000211022 ENTREZGENE
  ENSMUST00000211022.2 UniProtKB/TrEMBL
  ENSMUST00000211235 ENTREZGENE
  ENSMUST00000211235.2 UniProtKB/TrEMBL
  ENSMUST00000211764.2 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.2360 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  1.25.40.690 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  3.30.1610.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Nucleoporin_FG_rpt UniProtKB/TrEMBL
  Nucleoporin_S59-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nup96 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_S59 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Peptidase_S59_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:269966 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:109404 ENTREZGENE
NCBI Gene Nup98 ENTREZGENE
PANTHER NUCLEAR PORE COMPLEX PROTEIN NUP98-NUP96 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR23198 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Nucleoporin2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nucleoporin_FG UniProtKB/TrEMBL
  Nup96 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Nup98_GLEBS UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB NUP98 RGD
PhenoGen Nup98 PhenoGen
PROSITE NUP_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP Positive stranded ssRNA viruses UniProtKB/TrEMBL
  SSF82215 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A140T8J8 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GRA7 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GRB5 ENTREZGENE, UniProtKB/TrEMBL
  A0A1B0GS62_MOUSE UniProtKB/TrEMBL
  A0A1B0GSX7 ENTREZGENE, UniProtKB/TrEMBL
  B2RQL0 ENTREZGENE, UniProtKB/TrEMBL
  B7ZN81 ENTREZGENE, UniProtKB/TrEMBL
  NUP98_MOUSE UniProtKB/Swiss-Prot
  Q3TP40_MOUSE UniProtKB/TrEMBL
  Q3TPG3_MOUSE UniProtKB/TrEMBL
  Q3UJE5 ENTREZGENE, UniProtKB/TrEMBL
  Q4FZE7_MOUSE UniProtKB/TrEMBL
  Q68G59 ENTREZGENE
  Q6PFD9 ENTREZGENE
  Q9EQM8_MOUSE UniProtKB/TrEMBL
UniProt Secondary Q68G59 UniProtKB/Swiss-Prot