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Gene: Ormdl1 (ORM1-like 1 (S. cerevisiae)) Mus musculus

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Symbol:

Ormdl1

Name:

ORM1-like 1 (S. cerevisiae)

RGD ID:

1616560

MGI Page

MGI

Description:

Predicted to be involved in ceramide metabolic process; intracellular sphingolipid homeostasis; and sphingolipid biosynthetic process. Predicted to act upstream of or within negative regulation of ceramide biosynthetic process. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of serine palmitoyltransferase complex. Orthologous to human ORMDL1 (ORMDL sphingolipid biosynthesis regulator 1).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

C730042F17Rik; ORM1-like protein 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	53,336,254 - 53,349,404 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	53,336,254 - 53,349,468 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	53,297,095 - 53,310,245 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	53,297,095 - 53,310,309 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	53,353,939 - 53,367,089 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	53,241,658 - 53,254,783 (+)	NCBI		MGSCv36	mm8
Celera	1	53,836,500 - 53,849,637 (+)	NCBI		Celera
Cytogenetic Map	1	C1.1	NCBI
cM Map	1	26.99	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

immunodeficiency 31B (ISO)

Lynch syndrome (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (EXP)

1,2-dimethylhydrazine (EXP)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

bisphenol A (ISO)

bisphenol F (EXP)

carbon nanotube (EXP)

chlordecone (EXP)

copper(II) sulfate (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

diquat (EXP)

disodium selenite (ISO)

doxorubicin (ISO)

endosulfan (ISO)

fluoranthene (EXP)

folic acid (EXP)

gentamycin (ISO)

indometacin (ISO)

leflunomide (ISO)

mercury dichloride (ISO)

paracetamol (EXP)

pirinixic acid (EXP)

SB 431542 (ISO)

silicon dioxide (EXP)

sodium arsenite (ISO)

tetrachloromethane (EXP,ISO)

titanium dioxide (EXP)

trichloroethene (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

ceramide metabolic process (IBA,ISO,ISS)

intracellular sphingolipid homeostasis (IBA)

motor behavior (IGI)

myelination (IGI)

negative regulation of ceramide biosynthetic process (ISO)

regulation of ceramide biosynthetic process (IGI)

regulation of sphingolipid biosynthetic process (IGI)

sphingolipid biosynthetic process (IBA)

sphingomyelin biosynthetic process (IGI)

Cellular Component

endoplasmic reticulum (ISO)

endoplasmic reticulum membrane (ISO,ISS)

serine palmitoyltransferase complex (IBA)

Molecular Function

molecular_function (ND)

protein binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal mast cell physiology (IAGP)

decreased body size (IAGP)

decreased body weight (IAGP)

increased ceramide level (IAGP)

increased sphingosine level (IAGP)

prenatal lethality, complete penetrance (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8889548	PMID:10349636	PMID:11042159	PMID:11076861	PMID:11125038	PMID:11217851	PMID:12093374	PMID:12466851	PMID:12477932	PMID:14610273	PMID:14691545	PMID:15489334
PMID:16141072	PMID:16141073	PMID:21267068	PMID:21873635	PMID:24457600	PMID:25691431	PMID:25775599	PMID:26496610	PMID:31880535	PMID:37316542	PMID:38355793	PMID:38715613

Genomics

Comparative Map Data

Ormdl1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	53,336,254 - 53,349,404 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	53,336,254 - 53,349,468 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	53,297,095 - 53,310,245 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	53,297,095 - 53,310,309 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	53,353,939 - 53,367,089 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	53,241,658 - 53,254,783 (+)	NCBI		MGSCv36	mm8
Celera	1	53,836,500 - 53,849,637 (+)	NCBI		Celera
Cytogenetic Map	1	C1.1	NCBI
cM Map	1	26.99	NCBI

ORMDL1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	189,763,859 - 189,784,339 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	189,766,012 - 189,784,364 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	190,628,585 - 190,649,065 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	190,343,295 - 190,355,677 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	190,460,555 - 190,472,938	NCBI
Celera	2	184,229,906 - 184,244,025 (-)	NCBI		Celera
Cytogenetic Map	2	q32.2	NCBI
HuRef	2	182,494,629 - 182,508,748 (-)	NCBI		HuRef
CHM1_1	2	190,640,856 - 190,654,980 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	190,253,126 - 190,273,622 (-)	NCBI		T2T-CHM13v2.0

Ormdl1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	55,735,081 - 55,745,287 (-)	NCBI		GRCr8
mRatBN7.2	9	48,243,365 - 48,253,316 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	48,237,572 - 48,253,211 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	9	56,779,537 - 56,789,480 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	61,902,356 - 61,912,299 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	60,198,344 - 60,208,289 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	53,110,628 - 53,120,454 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	53,111,371 - 53,118,613 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	9	52,775,064 - 52,784,570 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	9	45,192,469 - 45,203,142 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	9	45,909,024 - 45,919,336 (-)	NCBI		Celera
Cytogenetic Map	9	q22	NCBI

Ormdl1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	9,100,516 - 9,113,223 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	9,100,516 - 9,113,230 (+)	NCBI	ChiLan1.0	ChiLan1.0

ORMDL1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	92,462,515 - 92,476,701 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	92,477,503 - 92,491,587 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	77,076,432 - 77,090,531 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	194,997,037 - 195,010,516 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	194,996,437 - 195,009,102 (-)	Ensembl	panpan1.1		panPan2

ORMDL1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	37	509,592 - 521,511 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	37	511,149 - 522,865 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	37	1,483,024 - 1,494,763 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	37	403,411 - 415,148 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	37	400,745 - 415,141 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	37	413,833 - 425,569 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	37	382,316 - 394,032 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	37	410,296 - 422,040 (-)	NCBI		UU_Cfam_GSD_1.0

Ormdl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	148,628,622 - 148,641,164 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936506	8,196,784 - 8,210,584 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936506	8,197,116 - 8,208,712 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

ORMDL1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	94,359,358 - 94,377,303 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	94,359,784 - 94,377,331 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	105,397,162 - 105,414,708 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

ORMDL1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	75,291,320 - 75,305,412 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	75,287,780 - 75,305,001 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	124,175,553 - 124,189,636 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Ormdl1
662 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	306
Count of miRNA genes:	245
Interacting mature miRNAs:	264
Transcripts:	ENSMUST00000027266, ENSMUST00000135746
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
11039528	Ccc3_m	colitis susceptibility in the Collaborative Cross 3 (mouse)					1	3680142	195051546	Mouse
1357524	W6q14_m	weight 6 weeks QTL 14 (mouse)			Not determined		1	34760138	73976915	Mouse
12910788	Pwgrq9_m	post-weaning growth rate QTL 9 (mouse)					1	40868008	67270256	Mouse
1301714	Vertcling_m	vertical clinging (mouse)			Not determined		1	42938031	76938167	Mouse
18182931	Metl1_m	metabolite locus 1, pyridoxate (mouse)					1	41275399	75275399	Mouse
4141305	Tgq9_m	triglyceride QTL 9 (mouse)			Not determined			51421605	85421605	Mouse
1357651	Lgq5_m	late growth QTL 5 (mouse)			Not determined		1	34760138	73976915	Mouse
12910786	Pwgrq10_m	post-weaning growth rate QTL 10 (mouse)					1	40868008	67270256	Mouse
11100001	Col4a1m1_m	collagen, type IV, alpha 1 modifier 1 (mouse)					1	25550191	62946882	Mouse
1301211	Bbaa11_m	B.burgdorferi-associated arthritis 11 (mouse)			Not determined		1	48889006	82889210	Mouse
1301722	Cia9_m	collagen induced arthritis QTL 9 (mouse)			Not determined		1	45783900	189303617	Mouse
13824984	Twq5_m	testis weight QTL 5 (mouse)					1	3069992	184732197	Mouse
1357721	Sle17_m	systematic lupus erythematosus susceptibility 17 (mouse)			Not determined		1	39132808	126445310	Mouse
1558855	Eae30_m	experimental allergic encephalomyelitis susceptibility 30 (mouse)			Not determined		1	45417773	72975057	Mouse
1301954	Lrnx11_m	learning-contextual 11 (mouse)			Not determined		1	39132808	74516365	Mouse
12880407	V125Dq2_m	vitamin D active form serum level QTL 2 (mouse)					1	19339081	53339081	Mouse
1357824	Estoq4_m	embryo survival total QTL 4 (mouse)			Not determined		1	34760138	73976915	Mouse
1357506	W10q6_m	weight 10 weeks QTL 6 (mouse)			Not determined		1	34760138	73976915	Mouse
4141032	Wbcc1_m	white blood cell count 1 (mouse)			Not determined			42259667	76259667	Mouse
39128207	Lwq16_m	liver weight QTL 16 (mouse)					1	34760138	73976915	Mouse
1558860	W10q7_m	weight 10 weeks QTL 7 (mouse)			Not determined		1	34760138	150193871	Mouse
4142307	Shali1_m	survival time to hyperoxic acute lung injury 1 (mouse)			Not determined			51964025	70406589	Mouse
12880409	V125Dq1_m	vitamin D active form serum level QTL 1 (mouse)					1	26039160	60039160	Mouse
4142433	Hbnr1_m	Heligmosomoides bakeri nematode resistance 1 (mouse)			Not determined			25550191	58273271	Mouse
1301616	Yaa2_m	Y-linked autoimmune acceleration 2 (mouse)			Not determined		1	46854690	80854839	Mouse
1357488	Splq3_m	spleen weight QTL 3 (mouse)			Not determined		1	34760138	150193871	Mouse
10043965	Obq24_m	obesity QTL 24 (mouse)			Not determined		1	50890216	84890216	Mouse
1301430	Cdcs2_m	cytokine deficiency colitis susceptibility 2 (mouse)			Not determined		1	48892345	82892485	Mouse
12879917	Shm3_m	sperm head morphology 3 (mouse)					1	44186904	62946882	Mouse
1357759	W3q12_m	weight 3 weeks QTL 12 (mouse)			Not determined		1	34760138	73976915	Mouse
4142291	Aec2_m	autoimmune exocrinopathy 2 (mouse)			Not determined			52457737	182250592	Mouse
1357753	Kidq2_m	kidney weight QTL 2 (mouse)			Not determined		1	34760138	150193871	Mouse
1558905	Gct7_m	granulosa cell tumorigenesis 7 (mouse)			Not determined		1	47349894	81350013	Mouse
1558822	Vas1_m	autoimmune vasitis resistance 1 (mouse)			Not determined		1	48889006	82889210	Mouse
1301670	Ssta1_m	susceptibility to Salmonella typhimurium antigens 1 (mouse)			Not determined		1	45946755	79946882	Mouse
1357475	w3q13_m	weight 3 weeks QTL 13 (mouse)			Not determined		1	23109591	73976915	Mouse
12910780	Pwgrq11_m	post-weaning growth rate QTL 11 (mouse)					1	40868008	67270256	Mouse
1301225	Sle7_m	systematic lupus erythematosus susceptibility 7 (mouse)			Not determined		1	46854690	80854839	Mouse
1301166	Thypr2_m	thymocyte proliferative response 2 (mouse)			Not determined		1	41273124	75273271	Mouse

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_145517	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC153650	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK050385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK052927	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AK077562	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC012315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC023695	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC023903	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC025572	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BF660823	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466548	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CN705165	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	EL956043	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000027266 ⟹ ENSMUSP00000027266

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	53,336,254 - 53,349,468 (+)	Ensembl
GRCm38.p6 Ensembl	1	53,297,095 - 53,310,309 (+)	Ensembl

Ensembl Acc Id:

ENSMUST00000135746

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	1	53,336,254 - 53,341,112 (+)	Ensembl
GRCm38.p6 Ensembl	1	53,297,095 - 53,301,953 (+)	Ensembl

RefSeq Acc Id:

NM_145517 ⟹ NP_663492

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	1	53,336,254 - 53,349,404 (+)	NCBI
GRCm38	1	53,297,095 - 53,310,245 (+)	ENTREZGENE
MGSCv37	1	53,353,939 - 53,367,089 (+)	RGD
Celera	1	53,836,500 - 53,849,637 (+)	RGD
cM Map	1		ENTREZGENE

Sequence:

show sequence

CCGGAAGCGGTGGGGCGCACCAGTAGCTCTAGCCAGAGGACCTACTGTGGCTGCCGCGGGAATT
GTCCTGTGACCAGCCAGGAGCTGGCGGCCGAGCAAACATGAATGTTGGAGTTGCCCACAGTGAG
GTAAACCCCAATACTCGTGTAATGAACAGCCGTGGTATGTGGCTGACATATGCGTTGGGAGTTG
GCCTGCTTCATATTGTATTACTCAGCATCCCCTTCTGCAGTGTTCCTGTTGCCTGGACCTTAAC
CAACATAATACATAATCTGGGGATGTATGTGTTTTTGCATGCAGTAAAAGGAACGCCTTTTGAG
ACTCCGGATCAGGGTAGAGCAAGGCTCCTAACTCACTGGGAACAGCTGGACTACGGAGTACAGT
TTACATCTTCTCGGAAGTTTTTCACAATTTCTCCAATAATTCTATACTTTCTGGCAAGTTTCTA
TACAAAGTATGACCCGACTCACTTCATCCTAAACACAGCTTCTCTGCTGAGTGTACTTATTCCC
AAAATGCCACAGCTGCATGGTGTTCGCATCTTTGGAATTAATAAGTATTGAAATGTCTGTGCAA
CTGAAGAGAACTGTTAAGAGCTTCCTGTAATGAAAGAGTAGTTAATGAACTGCACTGTTTCTGT
GATAATGTGAAATAAGAGGTATTTACATTGGAGGGCCAAGTACTGCTCCTTCACAAGCTGTCTT
GAAGTGCTCTACTTAAGGATGCCTCTGTCTAGTTTGCTTGGTATATTTCTGAGAGAGGCTTTGC
AGGCAGGCTGGGCAGGCCCAGCTTATAACTTGATGGTAGTAGGATAAGAGTACAGTAACTAAAT
CCAAGGAAATGTGGGATTTGTAAGAAACTAGGTCCAGCTTATAGTGAGCGAGCATTATGTTAGG
GAAAGAGCATTCCAATCATTCGTTCATAGCCGGTTGAAGCAGACTTCTAGAAAGCAGAACCTCC
TGTGTACATGTTTTTATTACTGTGCACAGTCTGCTTTGTATGACATACACCTGATATATGTCCT
CAGGTTCCTGGCTTAGTATCATGCATTGATAAATGAGGTACTGTTTGCATTTATTACATTACAG
GGTTTGTGAGGGTTTTGTCTTCATTTCTTGCTCTAAGAGAAGAAGATAGGCATCTTACAGTCAA
GGCTCTGAGTCAACGTGCTCATTTTGGAACAAAGTAGGTTTTACTGCTTTTCCAGAAGCAAAGC
TGCCAAACCAATTAAGAGAATAACTTACTTCAAGCACTTCAGGTCTTGAGTAGCTGAAAATTAT
TGTTTAGTTGGTTAAGTCTTTTCTTTCTTCTAAAAAGGAAATGCAAGATGGGGCCGGCTGGTGT
GGGGAGACCTAAGTAAAGAGTCCTCTGTCAGCAATGTTATCTGAAGTAACAGATAATATTGTCT
GCTCTTAGTCTCTTACTCTCCATCCGCACAGTTTGGTTTGCCCATTAATATTTCCTGTAAATGT
GTCAGTCTTAGTGTAGATGACCCAAAATGGTACCTATATTCACAGCAACAACTATATTGAATTC
TTGTGACTTGGGGAAGCTTCCTATAGTTGCTAGCATTCATTAATTGTATAAAGAGAAGTAAATA
CCTTTCTAAAATGATATAAAGCTGAAAAACTCAGTAACTTAAGAGTGAAGACAGTTGTCAACCA
ACTTACAAATCGATTGTGGCAATACACAGAGTTAAGGGTAGTGATCATTGTTTCATATCTCAAA
AGTACTGAATTTAGAAATCACTTGTTTGATACCCCCTTTGTATGTTTGCCTTTTCTTGTGTATC
TTTAAATAACTGGTAATTGATGCTTTAATAAAAGTTTTCTTTGGTGTAAGATTAAAA

hide sequence

Protein Sequences


Protein RefSeqs	NP_663492	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH12315	(Get FASTA)	NCBI Sequence Viewer
	AAH23695	(Get FASTA)	NCBI Sequence Viewer
	AAH25572	(Get FASTA)	NCBI Sequence Viewer
	BAC34226	(Get FASTA)	NCBI Sequence Viewer
	BAC36865	(Get FASTA)	NCBI Sequence Viewer
	EDK99989	(Get FASTA)	NCBI Sequence Viewer
	EDK99990	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000027266
	ENSMUSP00000027266.4
GenBank Protein	Q921I0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_663492 ⟸ NM_145517
- UniProtKB:	Q921I0 (UniProtKB/Swiss-Prot), Q8BK13 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MNVGVAHSEVNPNTRVMNSRGMWLTYALGVGLLHIVLLSIPFCSVPVAWTLTNIIHNLGMYVFL HAVKGTPFETPDQGRARLLTHWEQLDYGVQFTSSRKFFTISPIILYFLASFYTKYDPTHFILNT ASLLSVLIPKMPQLHGVRIFGINKY hide sequence

Ensembl Acc Id:

ENSMUSP00000027266 ⟸ ENSMUST00000027266

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q921I0-F1-model_v2	AlphaFold	Q921I0	1-153	view protein structure

Promoters

RGD ID:

6873694

Promoter ID:

EPDNEW_M298

Type:

initiation region

Name:

Ormdl1_1

Description:

Mus musculus ORM1-like 1 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	1	53,297,111 - 53,297,171	EPDNEW

RGD ID:

6818213

Promoter ID:

MM_KWN:733

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

3T3L1_Day0, 3T3L1_Day1, 3T3L1_Day2, 3T3L1_Day3, 3T3L1_Day4, 3T3L1_Day6, BoneMarrow_0Hour, BoneMarrow_2Hour, BoneMarrow_4Hour, Brain, ES_Cell, Kidney, Liver, Lung, MEF_B4, MEF_B6, Spleen

Transcripts:

OTTMUST00000051803, OTTMUST00000051804, OTTMUST00000051984, OTTMUST00000052022, OTTMUST00000052023, OTTMUST00000052024, OTTMUST00000052025, UC007AYX.1, UC007AYZ.1

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	1	53,353,634 - 53,354,134 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:2181669	AgrOrtholog
Ensembl Genes	ENSMUSG00000026097	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000027266	ENTREZGENE
	ENSMUST00000027266.4	UniProtKB/Swiss-Prot
InterPro	ORMDL	UniProtKB/Swiss-Prot
KEGG Report	mmu:227102	UniProtKB/Swiss-Prot
MGD	MGI:2181669	ENTREZGENE
NCBI Gene	Ormdl1	ENTREZGENE
PANTHER	PTHR12665	UniProtKB/Swiss-Prot
	PTHR12665:SF12	UniProtKB/Swiss-Prot
Pfam	ORMDL	UniProtKB/Swiss-Prot
PhenoGen	Ormdl1	PhenoGen
PIRSF	ORMDL	UniProtKB/Swiss-Prot
UniProt	ORML1_MOUSE	UniProtKB/Swiss-Prot
	Q8BK13	ENTREZGENE
	Q921I0	ENTREZGENE
UniProt Secondary	Q8BK13	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar

Mammalian Phenotype