Jam2 (junction adhesion molecule 2) - Rat Genome Database

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Gene: Jam2 (junction adhesion molecule 2) Mus musculus
Analyze
Symbol: Jam2
Name: junction adhesion molecule 2
RGD ID: 1615884
MGI Page MGI
Description: Predicted to enable integrin binding activity. Involved in several processes, including hematopoietic stem cell migration to bone marrow; leukocyte tethering or rolling; and negative regulation of myelination. Acts upstream of or within negative regulation of cell adhesion. Located in cell surface; somatodendritic compartment; and tight junction. Is expressed in several structures, including alimentary system; brain; cardiovascular system; eye; and genitourinary system. Human ortholog(s) of this gene implicated in basal ganglia calcification. Orthologous to human JAM2 (junctional adhesion molecule 2).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110002N23Rik; 2410030G21Rik; 2410167M24Rik; AU016127; JAM-; JAM-2; JAM-B; Jcam; Jcam2; junction adhesion molecule B; junction cell adhesion molecule 2; junctional adhesion molecule 2; junctional adhesion molecule B; vascular endothelial junction-associated molecule; VE-J; VE-JAM
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391684,571,011 - 84,623,268 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1684,571,011 - 84,622,816 (+)EnsemblGRCm39 Ensembl
GRCm381684,774,123 - 84,826,380 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1684,774,123 - 84,825,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv371684,774,368 - 84,823,129 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361684,657,025 - 84,707,359 (+)NCBIMGSCv36mm8
Celera1684,978,233 - 85,028,276 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1646.92NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (EXP)
1,3-dinitrobenzene  (ISO)
17alpha-ethynylestradiol  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (EXP,ISO)
3,7-dihydropurine-6-thione  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (EXP)
3-Nitrobenzanthrone  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (EXP)
acetamide  (ISO)
acrylamide  (ISO)
aflatoxin B1  (ISO)
all-trans-retinoic acid  (EXP)
amphetamine  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
arsenite(3-)  (EXP,ISO)
arsenous acid  (ISO)
atrazine  (ISO)
benzo[a]pyrene  (EXP,ISO)
beta-naphthoflavone  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (EXP)
buspirone  (ISO)
cannabidiol  (ISO)
cantharidin  (EXP)
carbon nanotube  (EXP)
CGP 52608  (ISO)
chloroprene  (ISO)
cytarabine  (ISO)
dexamethasone  (EXP,ISO)
dextran sulfate  (EXP)
diarsenic trioxide  (ISO)
dibenz[a,h]anthracene  (EXP)
dibenzofurans  (EXP)
dibutyl phthalate  (EXP)
dioxygen  (ISO)
diuron  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
ethanol  (EXP)
ethylparaben  (ISO)
folic acid  (EXP)
fonofos  (ISO)
gentamycin  (ISO)
glafenine  (ISO)
mercaptopurine  (ISO)
mercury dibromide  (ISO)
methylmercury chloride  (ISO)
mono(2-ethylhexyl) phthalate  (EXP)
N-methyl-N-nitrosourea  (EXP)
N-nitrosodiethylamine  (ISO)
naphthalene  (ISO)
nickel atom  (ISO)
ozone  (EXP)
paracetamol  (EXP)
parathion  (ISO)
perfluorohexanesulfonic acid  (EXP)
permethrin  (ISO)
phenobarbital  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP)
pregnenolone 16alpha-carbonitrile  (EXP)
progesterone  (EXP)
purine-6-thiol  (ISO)
SB 431542  (ISO)
silicon dioxide  (EXP,ISO)
silver atom  (EXP)
silver(0)  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sodium dichromate  (ISO)
Soman  (ISO)
sotorasib  (ISO)
tamoxifen  (EXP)
terbufos  (ISO)
tetrachloromethane  (EXP)
thioacetamide  (ISO)
titanium dioxide  (EXP)
trametinib  (ISO)
tributylstannane  (EXP)
valproic acid  (ISO)
vanadyl sulfate  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Junctional adhesion molecules (JAM)-B and -C contribute to leukocyte extravasation to the skin and mediate cutaneous inflammation. Ludwig RJ, etal., J Invest Dermatol. 2005 Nov;125(5):969-76.
2. Mouse MP Annotation Import Pipeline RGD automated import pipeline
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10779521   PMID:11036763   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11978082   PMID:12239159   PMID:12466851   PMID:12466854  
PMID:12466855   PMID:12476045   PMID:12477932   PMID:12520002   PMID:12810109   PMID:12904583   PMID:14519386   PMID:14610273   PMID:14681479   PMID:15372036   PMID:15489334   PMID:15741177  
PMID:16093349   PMID:16141072   PMID:16141073   PMID:16914739   PMID:17690169   PMID:17853450   PMID:17967808   PMID:18368118   PMID:18799693   PMID:19164472   PMID:19740376   PMID:20007774  
PMID:21267068   PMID:21731673   PMID:21868569   PMID:21873635   PMID:21947380   PMID:22511936   PMID:23068611   PMID:24194600   PMID:24357068   PMID:25817991   PMID:25826454   PMID:25911611  
PMID:26914234   PMID:27029737   PMID:27111582   PMID:27499083   PMID:27626380   PMID:27655933   PMID:28700664   PMID:29114073   PMID:29632360   PMID:29753567   PMID:29799838   PMID:30208054  
PMID:30995485   PMID:31167130   PMID:31786787   PMID:32142645   PMID:32386544   PMID:34321999   PMID:35364055   PMID:38355793  


Genomics

Comparative Map Data
Jam2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391684,571,011 - 84,623,268 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1684,571,011 - 84,622,816 (+)EnsemblGRCm39 Ensembl
GRCm381684,774,123 - 84,826,380 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1684,774,123 - 84,825,928 (+)EnsemblGRCm38mm10GRCm38
MGSCv371684,774,368 - 84,823,129 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361684,657,025 - 84,707,359 (+)NCBIMGSCv36mm8
Celera1684,978,233 - 85,028,276 (+)NCBICelera
Cytogenetic Map16C3.3NCBI
cM Map1646.92NCBI
JAM2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382125,639,258 - 25,717,562 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2125,639,258 - 25,717,562 (+)EnsemblGRCh38hg38GRCh38
GRCh372127,011,570 - 27,089,874 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362125,933,460 - 26,009,106 (+)NCBINCBI36Build 36hg18NCBI36
Build 342125,933,459 - 26,009,106NCBI
Celera2112,195,003 - 12,270,650 (+)NCBICelera
Cytogenetic Map21q21.3NCBI
HuRef2112,414,742 - 12,493,008 (+)NCBIHuRef
CHM1_12126,572,234 - 26,650,529 (+)NCBICHM1_1
T2T-CHM13v2.02123,996,799 - 24,075,106 (+)NCBIT2T-CHM13v2.0
Jam2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81137,316,287 - 37,366,517 (+)NCBIGRCr8
mRatBN7.21123,830,820 - 23,880,071 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1123,831,106 - 23,880,063 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1132,537,340 - 32,586,308 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01125,237,747 - 25,286,715 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01124,426,449 - 24,475,421 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01124,235,310 - 24,285,279 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1124,266,345 - 24,285,275 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01127,864,652 - 27,913,275 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41124,310,704 - 24,315,219 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1123,670,522 - 23,719,259 (+)NCBICelera
Cytogenetic Map11q11NCBI
Jam2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540725,571,570 - 25,599,551 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540725,531,891 - 25,599,551 (+)NCBIChiLan1.0ChiLan1.0
JAM2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22221,832,762 - 21,912,523 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12116,690,714 - 16,769,718 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02112,084,083 - 12,162,615 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12125,442,054 - 25,518,987 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2125,441,765 - 25,519,304 (+)Ensemblpanpan1.1panPan2
JAM2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13121,137,378 - 21,198,278 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3121,137,363 - 21,197,668 (+)NCBICanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3121,194,569 - 21,197,958 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03121,191,218 - 21,252,072 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3121,191,320 - 21,253,587 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13121,209,766 - 21,270,172 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03121,210,940 - 21,271,401 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03121,686,386 - 21,746,819 (+)NCBIUU_Cfam_GSD_1.0
Jam2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497121,697,079 - 21,751,432 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366401,929,255 - 1,984,872 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366401,930,450 - 1,984,438 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
JAM2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13189,165,975 - 189,275,839 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.113189,199,789 - 189,275,843 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213199,074,626 - 199,167,813 (+)NCBISscrofa10.2Sscrofa10.2susScr3
JAM2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1266,557,271 - 66,635,937 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl266,559,820 - 66,635,339 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605086,918,147 - 86,997,127 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Jam2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474513,704,652 - 13,776,172 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462474513,704,031 - 13,778,749 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Jam2
1852 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1308
Count of miRNA genes:706
Interacting mature miRNAs:865
Transcripts:ENSMUST00000098407, ENSMUST00000114195, ENSMUST00000138054
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1301394Eae11_msusceptibility to experimental allergic encephalomyelitis 11 (mouse)Not determined165356189187562035Mouse
1302194Pgia10_mproteoglycan induced arthritis 10 (mouse)Not determined166860072298008968Mouse
26884376Skwq4_mskull length QTL 4, 5 week (mouse)16841786490896888Mouse
1302096Aod1a_mautoimmune ovarian dysgenesis 1a (mouse)Not determined163544664392573008Mouse
1558740Bpq9_mblood pressure QTL 9 (mouse)Not determined166332733697327472Mouse
4141113Tgq28_mtriglyceride QTL 28 (mouse)Not determined6298664696986646Mouse
1301364Lith14_mlithogenic gene 14 (mouse)Not determined165566184689661961Mouse
4142262Lmr18_mleishmaniasis resistance 18 (mouse)Not determined166912761198008968Mouse
11049573Lmr18b_mleishmaniasis resistance 18b (mouse)166912761198008968Mouse
1301598Renf2_mrenal failure 2 (mouse)Not determined167038025298008968Mouse
11049574Lmr18a_mleishmaniasis resistance 18a (mouse)166912761198008968Mouse
11522753Cocia19_mcocaine-induced activity, QTL 19 (mouse)166925448298008968Mouse
1300928Etia_methanol induced activation (mouse)Not determined166331390797314016Mouse
1301125Sluc27_msusceptibility to lung cancer 27 (mouse)Not determined166160864495608764Mouse
1357517Bwtn1_mbody weight at necropsy 1 (mouse)Not determined162001932985600826Mouse
26884416Bzwq5_mbi-zygomatic width QTL 5, 5 week (mouse)163732036284696888Mouse
1301032Tauph_mtau phosphorylation (mouse)Not determined166907613298008968Mouse

Markers in Region
RH130790  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381684,825,587 - 84,825,789UniSTSGRCm38
MGSCv371684,825,832 - 84,826,034UniSTSGRCm37
Celera1685,030,979 - 85,031,181UniSTS
Cytogenetic Map16C3.3UniSTS
AU016127  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381684,825,643 - 84,825,801UniSTSGRCm38
MGSCv371684,825,888 - 84,826,046UniSTSGRCm37
Celera1685,031,035 - 85,031,193UniSTS
Cytogenetic Map16C3.3UniSTS
Whitehead/MRC_RH16914.23UniSTS
Jam2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C3.3UniSTS
cM Map16 UniSTS
UniSTS:237535  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381684,825,573 - 84,825,791UniSTSGRCm38
MGSCv371684,825,818 - 84,826,036UniSTSGRCm37
Celera1685,030,965 - 85,031,183UniSTS
Cytogenetic Map16C3.3UniSTS
UniSTS:237536  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381684,810,747 - 84,810,957UniSTSGRCm38
MGSCv371684,810,992 - 84,811,202UniSTSGRCm37
Celera1685,016,152 - 85,016,362UniSTS
Cytogenetic Map16C3.3UniSTS
Jam2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C3.3UniSTS
Jam2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C3.3UniSTS
cM Map16 UniSTS
Jam2  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map16C3.3UniSTS


Expression


Sequence


Ensembl Acc Id: ENSMUST00000098407   ⟹   ENSMUSP00000096007
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1684,571,274 - 84,607,884 (+)Ensembl
GRCm38.p6 Ensembl1684,774,386 - 84,810,996 (+)Ensembl
Ensembl Acc Id: ENSMUST00000114195   ⟹   ENSMUSP00000109833
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1684,571,011 - 84,622,816 (+)Ensembl
GRCm38.p6 Ensembl1684,774,123 - 84,825,928 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138054
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1684,606,295 - 84,619,774 (+)Ensembl
GRCm38.p6 Ensembl1684,809,407 - 84,822,886 (+)Ensembl
Ensembl Acc Id: ENSMUST00000231910   ⟹   ENSMUSP00000156235
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1684,590,446 - 84,619,918 (+)Ensembl
GRCm38.p6 Ensembl1684,793,558 - 84,823,030 (+)Ensembl
RefSeq Acc Id: NM_023844   ⟹   NP_076333
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391684,571,011 - 84,623,268 (+)NCBI
GRCm381684,774,123 - 84,826,380 (+)ENTREZGENE
MGSCv371684,774,368 - 84,823,129 (+)RGD
Celera1684,978,233 - 85,031,772 (+)ENTREZGENE
cM Map16 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006523075   ⟹   XP_006523138
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391684,590,407 - 84,622,820 (+)NCBI
GRCm381684,793,345 - 84,825,932 (+)NCBI
Sequence:
RefSeq Acc Id: NP_076333   ⟸   NM_023844
- Peptide Label: precursor
- UniProtKB: Q8C5K9 (UniProtKB/Swiss-Prot),   A6X955 (UniProtKB/Swiss-Prot),   Q8CE95 (UniProtKB/Swiss-Prot),   Q9JI59 (UniProtKB/Swiss-Prot),   A0A338P721 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006523138   ⟸   XM_006523075
- Peptide Label: isoform X1
- UniProtKB: A0A338P721 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000156235   ⟸   ENSMUST00000231910
Ensembl Acc Id: ENSMUSP00000109833   ⟸   ENSMUST00000114195
Ensembl Acc Id: ENSMUSP00000096007   ⟸   ENSMUST00000098407
Protein Domains
Ig-like   Ig-like C2-type   Ig-like V-type

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9JI59-F1-model_v2 AlphaFold Q9JI59 1-298 view protein structure

Promoters
RGD ID:13674278
Promoter ID:EPDNEW_M21288
Type:initiation region
Name:Jam2_2
Description:Mus musculus junction adhesion molecule 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21289  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381684,774,169 - 84,774,229EPDNEW
RGD ID:6827178
Promoter ID:MM_KWN:21513
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:ES_Cell,   Kidney,   Lung
Transcripts:ENSMUST00000114195,   UC007ZTF.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361684,774,271 - 84,774,771 (+)MPROMDB
RGD ID:13674280
Promoter ID:EPDNEW_M21289
Type:initiation region
Name:Jam2_1
Description:Mus musculus junction adhesion molecule 2 , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M21288  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381684,774,281 - 84,774,341EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1933820 AgrOrtholog
Ensembl Genes ENSMUSG00000053062 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000098407.3 UniProtKB/TrEMBL
  ENSMUST00000114195 ENTREZGENE
  ENSMUST00000114195.8 UniProtKB/Swiss-Prot
  ENSMUST00000231910 ENTREZGENE
  ENSMUST00000231910.2 UniProtKB/TrEMBL
Gene3D-CATH 2.60.40.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro Ig-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_sub2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Ig_V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  JAM2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:67374 UniProtKB/Swiss-Prot
MGD MGI:1933820 ENTREZGENE
NCBI Gene 67374 ENTREZGENE
PANTHER JUNCTIONAL ADHESION MOLECULE B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR44663 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam Ig_3 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  V-set UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Jam2 PhenoGen
PROSITE IG_LIKE UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART IGc2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  IGv UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  SM00409 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF48726 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A338P721 ENTREZGENE, UniProtKB/TrEMBL
  A6X955 ENTREZGENE
  JAM2_MOUSE UniProtKB/Swiss-Prot
  Q8C5K9 ENTREZGENE
  Q8CE95 ENTREZGENE
  Q9CWD9_MOUSE UniProtKB/TrEMBL
  Q9JI59 ENTREZGENE
UniProt Secondary A6X955 UniProtKB/Swiss-Prot
  Q8C5K9 UniProtKB/Swiss-Prot
  Q8CE95 UniProtKB/Swiss-Prot