Phactr1 (phosphatase and actin regulator 1) - Rat Genome Database

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Gene: Phactr1 (phosphatase and actin regulator 1) Mus musculus
Analyze
Symbol: Phactr1
Name: phosphatase and actin regulator 1
RGD ID: 1615702
MGI Page MGI
Description: Enables actin binding activity. Involved in nervous system development; regulation of neuron migration; and stress fiber assembly. Located in cytosol and nucleus. Is expressed in several structures, including central nervous system and neural retina. Human ortholog(s) of this gene implicated in artery disease (multiple) and brain disease (multiple). Orthologous to human PHACTR1 (phosphatase and actin regulator 1).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 9630030F18Rik; Rp; RPEL repeat containing 1; Rpel1
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391342,833,909 - 43,292,002 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1342,834,099 - 43,292,002 (+)EnsemblGRCm39 Ensembl
GRCm381342,680,374 - 43,138,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1342,680,623 - 43,138,526 (+)EnsemblGRCm38mm10GRCm38
MGSCv371342,775,992 - 43,233,895 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361342,691,595 - 43,149,498 (+)NCBIMGSCv36mm8
Celera1343,759,051 - 44,223,388 (+)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1321.05NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO)
cytosol  (IDA)
glutamatergic synapse  (ISO)
nucleus  (IDA,ISO)
postsynapse  (ISO)
synapse  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Myocardial Infarction-Associated SNP at 6p24 Interferes With MEF2 Binding and Associates With PHACTR1 Expression Levels in Human Coronary Arteries. Beaudoin M, etal., Arterioscler Thromb Vasc Biol. 2015 Jun;35(6):1472-9. doi: 10.1161/ATVBAHA.115.305534. Epub 2015 Apr 2.
2. Genetic heritability of ischemic stroke and the contribution of previously reported candidate gene and genomewide associations. Bevan S, etal., Stroke. 2012 Dec;43(12):3161-7. doi: 10.1161/STROKEAHA.112.665760. Epub 2012 Oct 4.
3. PHACTR1 gene polymorphism with the risk of coronary artery disease in Chinese Han population. Chen L, etal., Postgrad Med J. 2019 Feb;95(1120):67-71. doi: 10.1136/postgradmedj-2018-136298. Epub 2019 Feb 18.
4. National French registry of spontaneous coronary artery dissections: prevalence of fibromuscular dysplasia and genetic analyses. Combaret N, etal., EuroIntervention. 2021 Aug 27;17(6):508-515. doi: 10.4244/EIJ-D-20-01046.
5. Common variation in PHACTR1 is associated with susceptibility to cervical artery dissection. Debette S, etal., Nat Genet. 2015 Jan;47(1):78-83. doi: 10.1038/ng.3154. Epub 2014 Nov 24.
6. Investigating Coronary Artery Disease methylome through targeted bisulfite sequencing. Ghose S, etal., Gene. 2019 Dec 30;721:144107. doi: 10.1016/j.gene.2019.144107. Epub 2019 Sep 6.
7. Differential expression of PHACTR1 in atheromatous versus normal carotid artery tissue. Green IE, etal., J Clin Neurosci. 2020 Apr;74:265-267. doi: 10.1016/j.jocn.2020.01.018. Epub 2020 Jan 21.
8. Genome-wide association study in a Lebanese cohort confirms PHACTR1 as a major determinant of coronary artery stenosis. Hager J, etal., PLoS One. 2012;7(6):e38663. doi: 10.1371/journal.pone.0038663. Epub 2012 Jun 20.
9. Inhibiting phosphatase and actin regulator 1 expression is neuroprotective in the context of traumatic brain injury. Jing Y, etal., Neural Regen Res. 2023 Jul;18(7):1578-1583. doi: 10.4103/1673-5374.357904.
10. The Early-Onset Myocardial Infarction Associated PHACTR1 Gene Regulates Skeletal and Cardiac Alpha-Actin Gene Expression. Kelloniemi A, etal., PLoS One. 2015 Jun 22;10(6):e0130502. doi: 10.1371/journal.pone.0130502. eCollection 2015.
11. PHACTR1 Is a Genetic Susceptibility Locus for Fibromuscular Dysplasia Supporting Its Complex Genetic Pattern of Inheritance. Kiando SR, etal., PLoS Genet. 2016 Oct 28;12(10):e1006367. doi: 10.1371/journal.pgen.1006367. eCollection 2016 Oct.
12. PHACTR1 haplotypes are associated with carotid plaque presence and affect PHACTR1 mRNA expression in carotid plaque tissue. Kuveljic J, etal., Gene. 2019 Aug 20;710:273-278. doi: 10.1016/j.gene.2019.06.020. Epub 2019 Jun 12.
13. Association of PHACTR1 intronic variants with the first myocardial infarction and their effect on PHACTR1 mRNA expression in PBMCs. Kuveljic J, etal., Gene. 2021 Apr 5;775:145428. doi: 10.1016/j.gene.2021.145428. Epub 2021 Jan 16.
14. Genetic deficiency of Phactr1 promotes atherosclerosis development via facilitating M1 macrophage polarization and foam cell formation. Li T, etal., Clin Sci (Lond). 2020 Sep 18;134(17):2353-2368. doi: 10.1042/CS20191241.
15. The alleles of AGT and HIF1A gene affect the risk of hypertension in plateau residents. Li Z, etal., Exp Biol Med (Maywood). 2022 Feb;247(3):237-245. doi: 10.1177/15353702211055838. Epub 2021 Nov 10.
16. Multiethnic Genome-Wide Association Study of Subclinical Atherosclerosis in Individuals With Type 2 Diabetes. Lu Y, etal., Circ Genom Precis Med. 2021 Aug;14(4):e003258. doi: 10.1161/CIRCGEN.120.003258. Epub 2021 Jul 9.
17. PHACTR1, a coronary artery disease risk gene, mediates endothelial dysfunction. Ma X, etal., Front Immunol. 2022 Aug 25;13:958677. doi: 10.3389/fimmu.2022.958677. eCollection 2022.
18. Increased Risk of CHD in the Presence of rs7865618 (A allele): Tehran Lipid and Glucose Study. Matoo S, etal., Arch Iran Med. 2017 Mar;20(3):153-157.
19. Association of six genetic variants with myocardial infarction. Matsuoka R, etal., Int J Mol Med. 2015 May;35(5):1451-9. doi: 10.3892/ijmm.2015.2115. Epub 2015 Feb 27.
20. Genome-wide association of early-onset myocardial infarction with single nucleotide polymorphisms and copy number variants. Myocardial Infarction Genetics Consortium, etal., Nat Genet. 2009 Mar;41(3):334-41. doi: 10.1038/ng.327. Epub 2009 Feb 8.
21. PHACTR1 genotype predicts coronary artery disease in patients with familial hypercholesterolemia. Paquette M, etal., J Clin Lipidol. 2018 Jul-Aug;12(4):966-971. doi: 10.1016/j.jacl.2018.04.012. Epub 2018 Apr 30.
22. Risk loci for coronary artery calcification replicated at 9p21 and 6q24 in the Heinz Nixdorf Recall Study. Pechlivanis S, etal., BMC Med Genet. 2013 Feb 8;14:23. doi: 10.1186/1471-2350-14-23.
23. PHACTR1 Gene Polymorphism Is Associated with Increased Risk of Developing Premature Coronary Artery Disease in Mexican Population. Pérez-Hernández N, etal., Int J Environ Res Public Health. 2016 Aug 9;13(8):803. doi: 10.3390/ijerph13080803.
24. Genetic susceptibility to coronary heart disease in type 2 diabetes: 3 independent studies. Qi L, etal., J Am Coll Cardiol. 2011 Dec 13;58(25):2675-82. doi: 10.1016/j.jacc.2011.08.054.
25. Genetic and environmental risk factors for atherosclerosis regulate transcription of phosphatase and actin regulating gene PHACTR1. Reschen ME, etal., Atherosclerosis. 2016 Jul;250:95-105. doi: 10.1016/j.atherosclerosis.2016.04.025. Epub 2016 May 2.
26. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
27. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
28. Chromosome 1q21.2 and additional loci influence risk of spontaneous coronary artery dissection and myocardial infarction. Saw J, etal., Nat Commun. 2020 Sep 4;11(1):4432. doi: 10.1038/s41467-020-17558-x.
29. The rs12526453 Polymorphism in an Intron of the PHACTR1 Gene and Its Association with 5-Year Mortality of Patients with Myocardial Infarction. Szpakowicz A, etal., PLoS One. 2015 Jun 18;10(6):e0129820. doi: 10.1371/journal.pone.0129820. eCollection 2015.
30. Identification of Susceptibility Loci for Spontaneous Coronary Artery Dissection. Turley TN, etal., JAMA Cardiol. 2020 Aug 1;5(8):929-938. doi: 10.1001/jamacardio.2020.0872.
31. Genome-wide association study of coronary and aortic calcification implicates risk loci for coronary artery disease and myocardial infarction. van Setten J, etal., Atherosclerosis. 2013 Jun;228(2):400-5. doi: 10.1016/j.atherosclerosis.2013.02.039. Epub 2013 Mar 13.
32. Common genetic variants and subclinical atherosclerosis: The Multi-Ethnic Study of Atherosclerosis (MESA). Vargas JD, etal., Atherosclerosis. 2016 Feb;245:230-6. doi: 10.1016/j.atherosclerosis.2015.11.034. Epub 2015 Dec 8.
33. Genetic Study of PHACTR1 and Fibromuscular Dysplasia, Meta-Analysis and Effects on Clinical Features of Patients: The ARCADIA-POL Study. Warchol-Celinska E, etal., Hypertension. 2020 Jul;76(1):e4-e7. doi: 10.1161/HYPERTENSIONAHA.120.14793. Epub 2020 Jun 1.
34. Genetic analysis for a shared biological basis between migraine and coronary artery disease. Winsvold BS, etal., Neurol Genet. 2015 Jul 2;1(1):e10. doi: 10.1212/NXG.0000000000000010. eCollection 2015 Jun.
35. Shared genetic risk between migraine and coronary artery disease: A genome-wide analysis of common variants. Winsvold BS, etal., PLoS One. 2017 Sep 28;12(9):e0185663. doi: 10.1371/journal.pone.0185663. eCollection 2017.
36. PHACTR1 is associated with disease progression in Chinese Moyamoya disease. Yang Y, etal., PeerJ. 2020 May 5;8:e8841. doi: 10.7717/peerj.8841. eCollection 2020.
37. PHACTR1 and SLC22A3 gene polymorphisms are associated with reduced coronary artery disease risk in the male Chinese Han population. Zhao Q, etal., Oncotarget. 2017 Jan 3;8(1):658-663. doi: 10.18632/oncotarget.13506.
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11544199   PMID:12466851   PMID:12477932   PMID:15226823   PMID:15489334   PMID:16141072   PMID:16141073  
PMID:16359841   PMID:16452087   PMID:16602821   PMID:17609112   PMID:20564261   PMID:21677750   PMID:21873635   PMID:22262458   PMID:22766235   PMID:22976292   PMID:27160897   PMID:28671696  
PMID:28706196   PMID:28720499   PMID:28803787   PMID:30256902   PMID:32325033   PMID:32975518   PMID:33630758   PMID:33727568   PMID:35387477   PMID:35653516   PMID:36417873   PMID:37199156  
PMID:38272663   PMID:38355793  


Genomics

Comparative Map Data
Phactr1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391342,833,909 - 43,292,002 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1342,834,099 - 43,292,002 (+)EnsemblGRCm39 Ensembl
GRCm381342,680,374 - 43,138,526 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1342,680,623 - 43,138,526 (+)EnsemblGRCm38mm10GRCm38
MGSCv371342,775,992 - 43,233,895 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361342,691,595 - 43,149,498 (+)NCBIMGSCv36mm8
Celera1343,759,051 - 44,223,388 (+)NCBICelera
Cytogenetic Map13A4NCBI
cM Map1321.05NCBI
PHACTR1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38612,716,767 - 13,287,837 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl612,716,312 - 13,290,446 (+)EnsemblGRCh38hg38GRCh38
GRCh37612,716,999 - 13,288,069 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36612,825,819 - 13,395,507 (+)NCBINCBI36Build 36hg18NCBI36
Celera613,945,879 - 14,520,501 (+)NCBICelera
Cytogenetic Map6p24.1NCBI
HuRef612,649,580 - 13,225,071 (+)NCBIHuRef
CHM1_1612,719,328 - 13,290,404 (+)NCBICHM1_1
T2T-CHM13v2.0612,585,196 - 13,161,093 (+)NCBIT2T-CHM13v2.0
Phactr1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81721,769,006 - 22,246,227 (-)NCBIGRCr8
mRatBN7.21721,560,364 - 22,040,166 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1721,562,721 - 22,039,831 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1721,452,066 - 21,925,681 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01723,055,730 - 23,529,379 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01721,379,161 - 21,852,788 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01723,245,423 - 23,761,207 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01725,209,368 - 25,713,282 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41727,393,237 - 27,884,127 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.11727,395,233 - 27,885,918 (-)NCBI
Celera1721,259,994 - 21,732,655 (-)NCBICelera
Cytogenetic Map17p14-p12NCBI
Phactr1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554651,395,088 - 1,913,847 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554651,395,418 - 1,915,820 (-)NCBIChiLan1.0ChiLan1.0
PHACTR1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2527,369,901 - 27,944,831 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1623,359,830 - 23,934,840 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0612,560,862 - 13,136,126 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1612,920,920 - 13,508,965 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl612,922,871 - 13,505,609 (+)Ensemblpanpan1.1panPan2
PHACTR1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13512,233,152 - 12,745,031 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3512,491,067 - 12,741,754 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3512,140,823 - 12,694,920 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03512,289,444 - 12,843,408 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3512,291,040 - 12,844,113 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13512,116,414 - 12,670,075 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03512,167,394 - 12,723,499 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03513,491,510 - 14,046,540 (+)NCBIUU_Cfam_GSD_1.0
Phactr1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494611,773,444 - 12,269,374 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493653442,433 - 536,171 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493653442,354 - 323,735 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PHACTR1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl79,105,874 - 9,666,881 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.179,105,422 - 9,666,886 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.279,692,832 - 9,955,704 (+)NCBISscrofa10.2Sscrofa10.2susScr3
PHACTR1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11758,859,456 - 59,440,969 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1758,862,828 - 59,133,298 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604412,759,821 - 13,333,695 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Phactr1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475612,934,212 - 13,447,326 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475612,935,048 - 13,449,312 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Phactr1
17097 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:4022
Count of miRNA genes:804
Interacting mature miRNAs:1081
Transcripts:ENSMUST00000066928, ENSMUST00000110161, ENSMUST00000123987, ENSMUST00000127859, ENSMUST00000128646, ENSMUST00000131942, ENSMUST00000132050, ENSMUST00000136576, ENSMUST00000136951, ENSMUST00000137434, ENSMUST00000138640, ENSMUST00000140651, ENSMUST00000148891, ENSMUST00000149235, ENSMUST00000150620, ENSMUST00000161201
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300561Heal7_mwound healing/regeneration 7 (mouse)Not determined133614482070144904Mouse
1357591Tesq1_mtestis weight QTL 1 (mouse)Not determined132061551255720517Mouse
1301015Sysbp2_msystolic blood pressure 2 (mouse)Not determined132047761259821605Mouse
12738439Twq4_mtestis weight QTL 4 (mouse)133112911065129110Mouse
4142009Pregq3_mpregnancy QTL 3 (mouse)Not determined132061551272385189Mouse
1357587Pfat3_mpredicted fat percentage 3 (mouse)Not determined133610153070101640Mouse
10401111Pgia40_mproteoglycan induced arthritis 40 (mouse)Not determined132791846961918560Mouse
10412235Scgq5_mspontaneous crescentic glomerulonephritis QTL 5 (mouse)Not determined133606090896239162Mouse
10755517Chol15_mcholesterol 15 (mouse)133096946764969467Mouse
15039353Nmrs35_mNAFLD-associated magnetic resonance shift 35 (mouse)134058825374588253Mouse
1302157Bwem2_mbody weight day 30 males 2 (mouse)Not determined133962924973629397Mouse
10402494Igmsc1_mimmunoglobulin M secreting cells 1 (mouse)Not determined131716854544918560Mouse
13463469Gssq1_mglomerulosclerosis severity QTL 1 (mouse)131906090853061050Mouse
1301299Sluc23_msusceptibility to lung cancer 23 (mouse)Not determined133492194368922081Mouse
12880423V25Dq7_mvitamin D inactive form serum level QTL 7 (mouse)131958398353583983Mouse
1558898Hpi1_mhapatic PMN infiltration 1 (mouse)Not determined13441402553101640Mouse
4142489Ath25_matherosclerosis 25 (mouse)Not determined2583652959836529Mouse
10755533Chol18_mcholesterol 18 (mouse)133096946764969467Mouse
1300985Bmd13_mbone mineral density 13 (mouse)Not determined133962924973629397Mouse
1301880Hypt_mhypertension (mouse)Not determined131815679252156924Mouse
10045618Heal17_mwound healing/regeneration 17 (mouse)Not determined132074693954747056Mouse
10045621Heal21_mwound healing/regeneration 21 (mouse)Not determined132821737962217515Mouse
1300862Cfbw5_mcystic fibrosis body weight 5 (mouse)Not determined133872035872720517Mouse
1300668Pas10_mpulmonary adenoma susceptibility 10 (mouse)Not determined134148904275489158Mouse
26884393Humsd7_mhumerus midshaft diameter 7, 16 week (mouse)13395000076048119Mouse
1300710Pcd4ts2_mp-glycoprotein positive CD4 T cell subset 2 (mouse)Not determined132821044262210544Mouse
1301734Acsns2_mAngiostrongylus costaricensis nematode susceptibility 2 (mouse)Not determined133610153070101640Mouse
14696729Kidlq2_mkidney weight, left QTL 2 (mouse)133134473665344736Mouse
1301801Cpfd5_mcerebellum pattern fissures (mouse)Not determined133962924973629397Mouse
4142147Mvwf4_mmodifier of von Willebrand factor 4 (mouse)Not determined20477612112898424Mouse
1357802Vtbt15_mvertebral trabecular bone trait 15 (mouse)Not determined132821737962217515Mouse

Markers in Region
G67075  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381342,886,371 - 42,886,887UniSTSGRCm38
MGSCv371342,981,740 - 42,982,256UniSTSGRCm37
Celera1343,965,757 - 43,966,273UniSTS
Cytogenetic Map13A4UniSTS
UniSTS:237003  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381343,001,520 - 43,001,821UniSTSGRCm38
MGSCv371343,096,889 - 43,097,190UniSTSGRCm37
Celera1344,081,175 - 44,081,476UniSTS
Cytogenetic Map13A4UniSTS
fb13h01.x1  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm381342,801,004 - 42,802,124UniSTSGRCm38
MGSCv371342,896,373 - 42,897,493UniSTSGRCm37
Celera1343,878,946 - 43,880,066UniSTS
Cytogenetic Map13A4UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001005740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001005748 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001302636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006516911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011244395 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017315484 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030247228 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157988 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157989 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036157990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC140415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC154505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC164878 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK020681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK033937 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK047654 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK048208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK139452 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK161124 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK166463 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY993932 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC043065 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048407 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC048620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC061691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BY130551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CD551063 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466546 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CT025549 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000066928   ⟹   ENSMUSP00000066663
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1342,863,019 - 43,288,877 (+)Ensembl
GRCm38.p6 Ensembl1342,709,543 - 43,135,401 (+)Ensembl
Ensembl Acc Id: ENSMUST00000110161   ⟹   ENSMUSP00000105790
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1342,836,174 - 43,288,665 (+)Ensembl
GRCm38.p6 Ensembl1342,682,698 - 43,135,189 (+)Ensembl
Ensembl Acc Id: ENSMUST00000123987
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,279,396 - 43,288,725 (+)Ensembl
GRCm38.p6 Ensembl1343,125,920 - 43,135,249 (+)Ensembl
Ensembl Acc Id: ENSMUST00000127859
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,020,310 - 43,110,151 (+)Ensembl
GRCm38.p6 Ensembl1342,866,834 - 42,956,675 (+)Ensembl
Ensembl Acc Id: ENSMUST00000128646   ⟹   ENSMUSP00000122232
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1342,834,099 - 43,292,000 (+)Ensembl
GRCm38.p6 Ensembl1342,680,623 - 43,138,524 (+)Ensembl
Ensembl Acc Id: ENSMUST00000131942   ⟹   ENSMUSP00000123346
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,019,723 - 43,288,780 (+)Ensembl
GRCm38.p6 Ensembl1342,866,247 - 43,135,304 (+)Ensembl
Ensembl Acc Id: ENSMUST00000132050
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1342,834,275 - 43,112,377 (+)Ensembl
GRCm38.p6 Ensembl1342,680,799 - 42,958,901 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136576   ⟹   ENSMUSP00000158985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,276,333 - 43,288,887 (+)Ensembl
GRCm38.p6 Ensembl1343,122,857 - 43,135,411 (+)Ensembl
Ensembl Acc Id: ENSMUST00000136951
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,286,473 - 43,287,718 (+)Ensembl
GRCm38.p6 Ensembl1343,132,997 - 43,134,242 (+)Ensembl
Ensembl Acc Id: ENSMUST00000137434
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,265,609 - 43,288,859 (+)Ensembl
GRCm38.p6 Ensembl1343,112,133 - 43,135,383 (+)Ensembl
Ensembl Acc Id: ENSMUST00000138640   ⟹   ENSMUSP00000158964
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,276,348 - 43,288,835 (+)Ensembl
GRCm38.p6 Ensembl1343,122,872 - 43,135,359 (+)Ensembl
Ensembl Acc Id: ENSMUST00000140651
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,279,364 - 43,288,725 (+)Ensembl
GRCm38.p6 Ensembl1343,125,888 - 43,135,249 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148891   ⟹   ENSMUSP00000115228
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1342,863,057 - 43,292,002 (+)Ensembl
GRCm38.p6 Ensembl1342,709,581 - 43,138,526 (+)Ensembl
Ensembl Acc Id: ENSMUST00000149235   ⟹   ENSMUSP00000115207
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1342,834,989 - 43,288,721 (+)Ensembl
GRCm38.p6 Ensembl1342,681,513 - 43,135,245 (+)Ensembl
Ensembl Acc Id: ENSMUST00000150620
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,279,364 - 43,288,725 (+)Ensembl
GRCm38.p6 Ensembl1343,125,888 - 43,135,249 (+)Ensembl
Ensembl Acc Id: ENSMUST00000161201
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,288,860 - 43,291,989 (+)Ensembl
GRCm38.p6 Ensembl1343,135,384 - 43,138,513 (+)Ensembl
Ensembl Acc Id: ENSMUST00000239286   ⟹   ENSMUSP00000159214
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1343,070,127 - 43,231,206 (+)Ensembl
GRCm38.p6 Ensembl1342,916,651 - 43,077,730 (+)Ensembl
RefSeq Acc Id: NM_001005740   ⟹   NP_001005740
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391342,863,057 - 43,292,002 (+)NCBI
GRCm381342,709,581 - 43,138,526 (+)NCBI
MGSCv371342,775,992 - 43,233,895 (+)RGD
Celera1343,759,227 - 44,223,388 (+)NCBI
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001005748   ⟹   NP_001005748
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391343,276,315 - 43,292,002 (+)NCBI
GRCm381343,122,839 - 43,138,526 (+)NCBI
MGSCv371342,775,992 - 43,233,895 (+)RGD
Celera1343,759,227 - 44,223,388 (+)NCBI
cM Map13 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001302635   ⟹   NP_001289564
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391342,834,275 - 43,292,002 (+)NCBI
GRCm381342,680,799 - 43,138,526 (+)NCBI
Celera1343,759,227 - 44,223,388 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001302636   ⟹   NP_001289565
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391343,019,723 - 43,292,002 (+)NCBI
GRCm381342,866,247 - 43,138,526 (+)NCBI
Celera1343,759,227 - 44,223,388 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006516905   ⟹   XP_006516968
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391342,834,986 - 43,292,000 (+)NCBI
GRCm381342,681,206 - 43,138,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006516906   ⟹   XP_006516969
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391342,835,051 - 43,292,000 (+)NCBI
GRCm381342,681,799 - 43,138,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006516907   ⟹   XP_006516970
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391343,069,344 - 43,292,000 (+)NCBI
GRCm381342,914,818 - 43,138,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006516911   ⟹   XP_006516974
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391343,020,040 - 43,292,000 (+)NCBI
GRCm381342,866,725 - 43,138,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_011244395   ⟹   XP_011242697
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391342,833,909 - 43,292,000 (+)NCBI
GRCm381342,680,374 - 43,138,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017315484   ⟹   XP_017170973
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391343,069,350 - 43,292,000 (+)NCBI
GRCm381342,914,822 - 43,138,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247227   ⟹   XP_030103087
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391343,007,617 - 43,292,000 (+)NCBI
GRCm381342,866,242 - 43,138,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_030247228   ⟹   XP_030103088
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391343,020,041 - 43,292,000 (+)NCBI
GRCm381342,866,832 - 43,138,524 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157988   ⟹   XP_036013881
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391342,834,447 - 43,292,000 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157989   ⟹   XP_036013882
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391342,835,052 - 43,292,000 (+)NCBI
Sequence:
RefSeq Acc Id: XM_036157990   ⟹   XP_036013883
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391342,834,986 - 43,292,000 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001005740 (Get FASTA)   NCBI Sequence Viewer  
  NP_001005748 (Get FASTA)   NCBI Sequence Viewer  
  NP_001289564 (Get FASTA)   NCBI Sequence Viewer  
  NP_001289565 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516968 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516969 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516970 (Get FASTA)   NCBI Sequence Viewer  
  XP_006516974 (Get FASTA)   NCBI Sequence Viewer  
  XP_011242697 (Get FASTA)   NCBI Sequence Viewer  
  XP_017170973 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103087 (Get FASTA)   NCBI Sequence Viewer  
  XP_030103088 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013881 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013882 (Get FASTA)   NCBI Sequence Viewer  
  XP_036013883 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH48407 (Get FASTA)   NCBI Sequence Viewer  
  AAH48620 (Get FASTA)   NCBI Sequence Viewer  
  AAH61691 (Get FASTA)   NCBI Sequence Viewer  
  AAY42814 (Get FASTA)   NCBI Sequence Viewer  
  BAC33272 (Get FASTA)   NCBI Sequence Viewer  
  BAE38791 (Get FASTA)   NCBI Sequence Viewer  
  EDL40984 (Get FASTA)   NCBI Sequence Viewer  
  EDL40985 (Get FASTA)   NCBI Sequence Viewer  
  EDL40986 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000066663.6
  ENSMUSP00000105790
  ENSMUSP00000105790.4
  ENSMUSP00000115207
  ENSMUSP00000115207.2
  ENSMUSP00000115228
  ENSMUSP00000115228.2
  ENSMUSP00000122232
  ENSMUSP00000122232.2
  ENSMUSP00000123346
  ENSMUSP00000123346.2
  ENSMUSP00000158964.2
  ENSMUSP00000158985
  ENSMUSP00000158985.2
  ENSMUSP00000159214.2
GenBank Protein Q2M3X8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001005740   ⟸   NM_001005740
- Peptide Label: isoform 2
- UniProtKB: Q2M3X8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001005748   ⟸   NM_001005748
- Peptide Label: isoform 3
- UniProtKB: A0A5F8MPI2 (UniProtKB/TrEMBL),   Q3TLK1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516968   ⟸   XM_006516905
- Peptide Label: isoform X1
- UniProtKB: Q2M3X8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006516969   ⟸   XM_006516906
- Peptide Label: isoform X1
- UniProtKB: Q2M3X8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_006516974   ⟸   XM_006516911
- Peptide Label: isoform X5
- UniProtKB: B1B1B8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006516970   ⟸   XM_006516907
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_011242697   ⟸   XM_011244395
- Peptide Label: isoform X1
- UniProtKB: Q2M3X8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289564   ⟸   NM_001302635
- Peptide Label: isoform 4
- UniProtKB: Q8C873 (UniProtKB/Swiss-Prot),   Q80VL9 (UniProtKB/Swiss-Prot),   Q2M3X8 (UniProtKB/Swiss-Prot),   G5E8P7 (UniProtKB/Swiss-Prot),   B1B1B7 (UniProtKB/Swiss-Prot),   B1B1B6 (UniProtKB/Swiss-Prot),   B1B1B5 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001289565   ⟸   NM_001302636
- Peptide Label: isoform 5
- UniProtKB: B1B1B8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017170973   ⟸   XM_017315484
- Peptide Label: isoform X4
- Sequence:
RefSeq Acc Id: XP_030103087   ⟸   XM_030247227
- Peptide Label: isoform X6
RefSeq Acc Id: XP_030103088   ⟸   XM_030247228
- Peptide Label: isoform X6
Ensembl Acc Id: ENSMUSP00000066663   ⟸   ENSMUST00000066928
Ensembl Acc Id: ENSMUSP00000158964   ⟸   ENSMUST00000138640
Ensembl Acc Id: ENSMUSP00000105790   ⟸   ENSMUST00000110161
Ensembl Acc Id: ENSMUSP00000159214   ⟸   ENSMUST00000239286
Ensembl Acc Id: ENSMUSP00000123346   ⟸   ENSMUST00000131942
Ensembl Acc Id: ENSMUSP00000115207   ⟸   ENSMUST00000149235
Ensembl Acc Id: ENSMUSP00000115228   ⟸   ENSMUST00000148891
Ensembl Acc Id: ENSMUSP00000122232   ⟸   ENSMUST00000128646
Ensembl Acc Id: ENSMUSP00000158985   ⟸   ENSMUST00000136576
RefSeq Acc Id: XP_036013881   ⟸   XM_036157988
- Peptide Label: isoform X3
- UniProtKB: Q8C873 (UniProtKB/Swiss-Prot),   Q80VL9 (UniProtKB/Swiss-Prot),   Q2M3X8 (UniProtKB/Swiss-Prot),   G5E8P7 (UniProtKB/Swiss-Prot),   B1B1B7 (UniProtKB/Swiss-Prot),   B1B1B6 (UniProtKB/Swiss-Prot),   B1B1B5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036013883   ⟸   XM_036157990
- Peptide Label: isoform X3
- UniProtKB: Q8C873 (UniProtKB/Swiss-Prot),   Q80VL9 (UniProtKB/Swiss-Prot),   Q2M3X8 (UniProtKB/Swiss-Prot),   G5E8P7 (UniProtKB/Swiss-Prot),   B1B1B7 (UniProtKB/Swiss-Prot),   B1B1B6 (UniProtKB/Swiss-Prot),   B1B1B5 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: XP_036013882   ⟸   XM_036157989
- Peptide Label: isoform X3
- UniProtKB: Q8C873 (UniProtKB/Swiss-Prot),   Q80VL9 (UniProtKB/Swiss-Prot),   Q2M3X8 (UniProtKB/Swiss-Prot),   G5E8P7 (UniProtKB/Swiss-Prot),   B1B1B7 (UniProtKB/Swiss-Prot),   B1B1B6 (UniProtKB/Swiss-Prot),   B1B1B5 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q2M3X8-F1-model_v2 AlphaFold Q2M3X8 1-580 view protein structure

Promoters
RGD ID:8680188
Promoter ID:EPDNEW_M18125
Type:initiation region
Name:Phactr1_2
Description:Mus musculus phosphatase and actin regulator 1 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18126  EPDNEW_M18127  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381342,680,797 - 42,680,857EPDNEW
RGD ID:8680190
Promoter ID:EPDNEW_M18126
Type:initiation region
Name:Phactr1_3
Description:Mus musculus phosphatase and actin regulator 1 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18125  EPDNEW_M18127  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381342,681,602 - 42,681,662EPDNEW
RGD ID:8680194
Promoter ID:EPDNEW_M18127
Type:initiation region
Name:Phactr1_1
Description:Mus musculus phosphatase and actin regulator 1 , transcript variant3, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M18125  EPDNEW_M18126  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381342,709,533 - 42,709,593EPDNEW
RGD ID:6824249
Promoter ID:MM_KWN:13917
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000065155
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361342,776,271 - 42,776,771 (+)MPROMDB
RGD ID:6824255
Promoter ID:MM_KWN:13919
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000065150,   UC007QFQ.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361342,804,186 - 42,804,686 (+)MPROMDB
RGD ID:6824254
Promoter ID:MM_KWN:13921
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   Lung
Transcripts:OTTMUST00000065156,   UC007QFR.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361342,961,661 - 42,962,242 (+)MPROMDB
RGD ID:6824252
Promoter ID:MM_KWN:13924
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000065157
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361343,207,591 - 43,208,091 (+)MPROMDB
RGD ID:6824247
Promoter ID:MM_KWN:13925
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:NM_001005748,   OTTMUST00000065160
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361343,217,266 - 43,217,766 (+)MPROMDB
RGD ID:6824253
Promoter ID:MM_KWN:13928
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Brain
Transcripts:OTTMUST00000065161
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361343,227,441 - 43,228,592 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2659021 AgrOrtholog
Ensembl Genes ENSMUSG00000054728 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000066928.12 UniProtKB/Swiss-Prot
  ENSMUST00000110161 ENTREZGENE
  ENSMUST00000110161.10 UniProtKB/Swiss-Prot
  ENSMUST00000128646 ENTREZGENE
  ENSMUST00000128646.8 UniProtKB/Swiss-Prot
  ENSMUST00000131942 ENTREZGENE
  ENSMUST00000131942.2 UniProtKB/TrEMBL
  ENSMUST00000136576 ENTREZGENE
  ENSMUST00000136576.8 UniProtKB/TrEMBL
  ENSMUST00000138640.8 UniProtKB/TrEMBL
  ENSMUST00000148891 ENTREZGENE
  ENSMUST00000148891.8 UniProtKB/Swiss-Prot
  ENSMUST00000149235 ENTREZGENE
  ENSMUST00000149235.8 UniProtKB/Swiss-Prot
  ENSMUST00000239286.2 UniProtKB/TrEMBL
Gene3D-CATH 6.10.140.1750 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  6.10.140.2130 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro RPEL_repeat UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:218194 UniProtKB/Swiss-Prot
MGD MGI:2659021 ENTREZGENE
NCBI Gene Phactr1 ENTREZGENE
PANTHER PHOSPHATASE AND ACTIN REGULATOR PHACTR UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR12751:SF6 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam RPEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Phactr1 PhenoGen
PROSITE RPEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART RPEL UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A5F8MPG5_MOUSE UniProtKB/TrEMBL
  A0A5F8MPI2 ENTREZGENE, UniProtKB/TrEMBL
  A0A668KL56_MOUSE UniProtKB/TrEMBL
  B1B1B5 ENTREZGENE
  B1B1B6 ENTREZGENE
  B1B1B7 ENTREZGENE
  B1B1B8 ENTREZGENE, UniProtKB/TrEMBL
  G5E8P7 ENTREZGENE
  PHAR1_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE
  Q3TLK1 ENTREZGENE, UniProtKB/TrEMBL
  Q80VL9 ENTREZGENE
  Q80ZP7_MOUSE UniProtKB/TrEMBL
  Q8C873 ENTREZGENE
UniProt Secondary B1B1B5 UniProtKB/Swiss-Prot
  B1B1B6 UniProtKB/Swiss-Prot
  B1B1B7 UniProtKB/Swiss-Prot
  G5E8P7 UniProtKB/Swiss-Prot
  Q80VL9 UniProtKB/Swiss-Prot
  Q8C873 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-08-26 Phactr1  phosphatase and actin regulator 1  Rpel1  RPEL repeat containing 1  Symbol and/or name updated 27372883 PROVISIONAL
2024-08-21 Rpel1  RPEL repeat containing 1  Phactr1  phosphatase and actin regulator 1  Symbol and/or name change 5135510 APPROVED
2024-08-21 Phactr1  phosphatase and actin regulator 1  Rpel1  RPEL repeat containing 1  Symbol and/or name change 5135510 APPROVED
2024-08-21 Rpel1  RPEL repeat containing 1  Phactr1  phosphatase and actin regulator 1  Symbol and/or name change 5135510 APPROVED