Lbh (limb-bud and heart) - Rat Genome Database

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Advanced Search (OLGA)
Gene: Lbh (limb-bud and heart) Mus musculus
Analyze
Symbol: Lbh
Name: limb-bud and heart
RGD ID: 1615008
MGI Page MGI
Description: Involved in several processes, including negative regulation of intracellular estrogen receptor signaling pathway; positive regulation of mammary stem cell proliferation; and positive regulation of somatic stem cell division. Acts upstream of or within positive regulation of DNA-templated transcription. Located in nucleus. Is expressed in several structures, including gut; heart; limb bud; mesendoderm; and nervous system. Orthologous to human LBH (LBH regulator of WNT signaling pathway).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1810009F10Rik; 6720416L16Rik; limb bud and heart-expressed protein
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391773,225,300 - 73,248,941 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1773,225,300 - 73,248,942 (+)EnsemblGRCm39 Ensembl
GRCm381772,918,305 - 72,941,946 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1772,918,305 - 72,941,947 (+)EnsemblGRCm38mm10GRCm38
MGSCv371773,267,645 - 73,291,286 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361772,823,326 - 72,846,942 (+)NCBIMGSCv36mm8
Celera1777,201,369 - 77,224,975 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1744.73NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(-)-demecolcine  (ISO)
1-naphthyl isothiocyanate  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
4,4'-diaminodiphenylmethane  (ISO)
4-hydroxyphenyl retinamide  (EXP)
acetamide  (ISO)
all-trans-retinoic acid  (ISO)
amphetamine  (ISO)
arsenite(3-)  (ISO)
benzo[a]pyrene  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (ISO)
bisphenol A  (EXP,ISO)
butan-1-ol  (ISO)
butanal  (ISO)
calcitriol  (ISO)
cantharidin  (EXP)
carbon nanotube  (EXP)
chloroprene  (EXP)
choline  (EXP)
cisplatin  (ISO)
clobetasol  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
Cuprizon  (ISO)
cyclosporin A  (ISO)
cytarabine  (ISO)
DDT  (EXP)
Dibutyl phosphate  (ISO)
dibutyl phthalate  (EXP)
dioxygen  (EXP)
doxorubicin  (ISO)
endosulfan  (ISO)
ethanol  (ISO)
fenofibrate  (ISO)
fenthion  (EXP)
folic acid  (EXP)
genistein  (EXP)
gentamycin  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
inulin  (EXP)
irinotecan  (ISO)
isobutanol  (ISO)
isoprenaline  (EXP)
L-methionine  (EXP)
lead diacetate  (EXP)
lipopolysaccharide  (EXP,ISO)
methidathion  (EXP)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
mitoxantrone  (ISO)
mono(2-ethylhexyl) phthalate  (EXP,ISO)
Monobutylphthalate  (EXP)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodimethylamine  (ISO)
naphthalene  (EXP)
niclosamide  (ISO)
p-toluidine  (ISO)
paracetamol  (ISO)
pentanal  (ISO)
perfluorooctane-1-sulfonic acid  (EXP)
pirinixic acid  (EXP)
propanal  (ISO)
quercetin  (ISO)
raloxifene  (ISO)
rotenone  (EXP)
S-(1,2-dichlorovinyl)-L-cysteine  (ISO)
silicon dioxide  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
simvastatin  (EXP)
sodium arsenate  (EXP)
sodium arsenite  (EXP,ISO)
sunitinib  (ISO)
T-2 toxin  (ISO)
tamoxifen  (ISO)
tebuconazole  (ISO)
testosterone  (EXP)
tetrachloromethane  (EXP)
thapsigargin  (ISO)
thioacetamide  (ISO)
thiram  (ISO)
trichloroethene  (ISO)
trichostatin A  (ISO)
triclosan  (ISO)
triphenyl phosphate  (ISO)
urethane  (ISO)
valdecoxib  (ISO)
valproic acid  (EXP,ISO)
vinclozolin  (ISO)
vincristine  (ISO)
zoledronic acid  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (ISO,ISS)
nucleus  (IBA,IDA,ISO)
protein-containing complex  (ISO,ISS)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:11336496   PMID:12466851   PMID:12477932   PMID:15475267   PMID:15958514   PMID:16141072   PMID:16141073  
PMID:16602821   PMID:17473172   PMID:19607824   PMID:20606007   PMID:21150899   PMID:21362171   PMID:21677750   PMID:21873635   PMID:23495064   PMID:24952961   PMID:25655704   PMID:28807995  
PMID:29031500   PMID:30006735   PMID:30509497   PMID:32325033   PMID:33553423   PMID:33674448   PMID:34975330   PMID:36917392  


Genomics

Comparative Map Data
Lbh
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391773,225,300 - 73,248,941 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1773,225,300 - 73,248,942 (+)EnsemblGRCm39 Ensembl
GRCm381772,918,305 - 72,941,946 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1772,918,305 - 72,941,947 (+)EnsemblGRCm38mm10GRCm38
MGSCv371773,267,645 - 73,291,286 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361772,823,326 - 72,846,942 (+)NCBIMGSCv36mm8
Celera1777,201,369 - 77,224,975 (+)NCBICelera
Cytogenetic Map17E1.3NCBI
cM Map1744.73NCBI
LBH
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38230,231,534 - 30,260,028 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl230,231,534 - 30,323,730 (+)EnsemblGRCh38hg38GRCh38
GRCh37230,454,400 - 30,482,894 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36230,307,901 - 30,336,403 (+)NCBINCBI36Build 36hg18NCBI36
Celera230,288,761 - 30,325,820 (+)NCBICelera
Cytogenetic Map2p23.1NCBI
HuRef230,192,937 - 30,221,438 (+)NCBIHuRef
CHM1_1230,384,624 - 30,413,128 (+)NCBICHM1_1
T2T-CHM13v2.0230,275,785 - 30,304,277 (+)NCBIT2T-CHM13v2.0
Lbh
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8628,321,040 - 28,344,855 (-)NCBIGRCr8
mRatBN7.2622,569,238 - 22,593,056 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl622,568,834 - 22,593,079 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx622,900,702 - 22,924,517 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0623,216,535 - 23,240,350 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0622,699,234 - 22,723,154 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0624,154,207 - 24,184,217 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl624,160,226 - 24,181,866 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0634,010,473 - 34,031,267 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4622,662,376 - 22,664,667 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera622,105,340 - 22,129,287 (-)NCBICelera
Cytogenetic Map6q14NCBI
Lbh
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495546912,054,727 - 12,078,796 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495546912,054,727 - 12,078,796 (+)NCBIChiLan1.0ChiLan1.0
LBH
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21296,240,784 - 96,269,439 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A96,244,758 - 96,273,413 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A30,244,474 - 30,273,048 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A30,320,247 - 30,348,139 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2A30,320,249 - 30,411,779 (+)Ensemblpanpan1.1panPan2
LBH
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11723,939,135 - 23,969,611 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1723,938,772 - 24,022,140 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1723,736,913 - 23,762,365 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01724,505,537 - 24,531,139 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1724,500,181 - 24,583,683 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11723,811,250 - 23,836,515 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01723,874,403 - 23,899,677 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01723,973,706 - 23,999,175 (+)NCBIUU_Cfam_GSD_1.0
Lbh
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629268,040,234 - 68,088,820 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364932,750,745 - 2,776,141 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364932,750,745 - 2,776,145 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LBH
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl3109,078,286 - 109,105,529 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.13109,078,285 - 109,113,536 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.23115,765,351 - 115,795,411 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LBH
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11477,278,080 - 77,306,721 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1477,280,510 - 77,306,518 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604534,778,813 - 34,807,286 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lbh
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473812,106,236 - 12,130,052 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462473812,098,227 - 12,129,968 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Lbh
913 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1287
Count of miRNA genes:628
Interacting mature miRNAs:774
Transcripts:ENSMUST00000024857, ENSMUST00000148556
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4141758Pstc5_mperiosteal circumference 5 (mouse)Not determined175710765191107803Mouse
4142201Obrq15_mobesity resistance QTL 15 (mouse)Not determined5753444780885776Mouse
1357532Bmch7_mbone mechanical trait 7 (mouse)Not determined175175842585758612Mouse
4141879Chlq9_mcirculating hormone level QTL 9 (mouse)Not determined175175842585758612Mouse
11528551Sluc32_msusceptibility to lung cancer 32 (mouse)176230101095294699Mouse
1301338Lmr1_mleishmaniasis resistance 1 (mouse)Not determined171008134086996400Mouse
11565819Ppipq1_mprepulse inhibition percentage QTL 1 (mouse)177105765575377655Mouse
12910536Nrq8a_mnoise-induced hearing loss resistant QTL 8a (mouse)175710765191107803Mouse
12910537Nrq8_mnoise-induced hearing loss resistant QTL 8 (mouse)175710765191107803Mouse
4141040Hmtb9_mhemostasis and thrombosis rebleeding time 9 (mouse)Not determined5758908991589197Mouse
4142256Nilac12_mnicotine induced locomotor activity 12 (mouse)Not determined176894131995294699Mouse
1302017Aliq3_macute lung injury QTL 3 (mouse)Not determined176388554895294699Mouse
1357447Heal13_mwound healing/regeneration 13 (mouse)Not determined175710765191107803Mouse
26884428Cvht3_mcranial vault height 3, 5 week (mouse)174651092682407429Mouse
14928308Manh82_mmandible shape 82 (mouse)176631524395294699Mouse
1301107Scc4_mcolon tumor susceptibility 4 (mouse)Not determined176230101095294699Mouse
11039498Ltpr7b_mLeishmania tropica response 7b (mouse)177070119895294699Mouse
11039499Ltpr7a_mLeishmania tropica response 7a (mouse)177070119895294699Mouse
11039500Ltpr7c_mLeishmania tropica response 7c (mouse)177070119895294699Mouse
4141011Bmd26_mbone mineral density 26 (mouse)Not determined175710765191107803Mouse
1300735Pgia20_mproteoglycan induced arthritis 20 (mouse)Not determined175710765191107803Mouse
1357754Ahl3_mage related hearing loss 3 (mouse)Not determined175020395784204103Mouse
4141391Lfnq6_mlung function QTL 6 (mouse)Not determined7217488874125620Mouse
4142414Pregq4_mpregnancy QTL 4 (mouse)Not determined175753444793507179Mouse
11039514Ltpr7_mLeishmania tropica response 7 (mouse)177070119895294699Mouse
1301728Ffal1_mfree fatty acid level 1 (mouse)Not determined176521493895294699Mouse
13464254Ifvrq3_minfluenza virus resistance QTL 3 (mouse)176795765583908089Mouse
4141319Hmtb8_mhemostasis and thrombosis rebleeding time 8 (mouse)Not determined4053444774534623Mouse
4142150Stheal11_msoft tissue heal 11 (mouse)Not determined171228621183361768Mouse
15039324Nmrs48_mNAFLD-associated magnetic resonance shift 48 (mouse)174093918774939187Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000024857   ⟹   ENSMUSP00000024857
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1773,225,300 - 73,248,942 (+)Ensembl
GRCm38.p6 Ensembl1772,918,305 - 72,941,947 (+)Ensembl
Ensembl Acc Id: ENSMUST00000148556   ⟹   ENSMUSP00000123062
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1773,228,183 - 73,246,340 (+)Ensembl
GRCm38.p6 Ensembl1772,921,188 - 72,939,345 (+)Ensembl
RefSeq Acc Id: NM_029999   ⟹   NP_084275
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391773,225,300 - 73,248,941 (+)NCBI
GRCm381772,918,305 - 72,941,946 (+)ENTREZGENE
MGSCv371773,267,645 - 73,291,286 (+)RGD
Celera1777,201,369 - 77,224,975 (+)RGD
cM Map17 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_084275   ⟸   NM_029999
- UniProtKB: Q99MQ2 (UniProtKB/Swiss-Prot),   Q9CX60 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000123062   ⟸   ENSMUST00000148556
Ensembl Acc Id: ENSMUSP00000024857   ⟸   ENSMUST00000024857
Protein Domains
LBH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9CX60-F1-model_v2 AlphaFold Q9CX60 1-105 view protein structure

Promoters
RGD ID:13676746
Promoter ID:EPDNEW_M22522
Type:multiple initiation site
Name:Lbh_1
Description:Mus musculus limb-bud and heart , mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381772,918,307 - 72,918,367EPDNEW
RGD ID:6828274
Promoter ID:MM_KWN:24167
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_029999
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361773,266,736 - 73,267,767 (+)MPROMDB
RGD ID:6828279
Promoter ID:MM_KWN:24168
Type:Non-CpG
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   MEF_B4,   MEF_B6
Transcripts:OTTMUST00000070623
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv361773,269,726 - 73,270,847 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1925139 AgrOrtholog
Ensembl Genes ENSMUSG00000024063 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000024857 ENTREZGENE
  ENSMUST00000024857.14 UniProtKB/Swiss-Prot
  ENSMUST00000148556.2 UniProtKB/TrEMBL
InterPro LBH UniProtKB/Swiss-Prot
  LBH_dom UniProtKB/Swiss-Prot
  LBH_dom_prot UniProtKB/Swiss-Prot
KEGG Report mmu:77889 UniProtKB/Swiss-Prot
MGD MGI:1925139 ENTREZGENE
NCBI Gene 77889 ENTREZGENE
PANTHER PROTEIN LBH UniProtKB/Swiss-Prot
  PTHR14987 UniProtKB/Swiss-Prot
Pfam Lbh UniProtKB/Swiss-Prot
PhenoGen Lbh PhenoGen
PIRSF LBH UniProtKB/Swiss-Prot
PRINTS LBHPROTEIN UniProtKB/Swiss-Prot
UniProt F6UVG6_MOUSE UniProtKB/TrEMBL
  LBH_MOUSE UniProtKB/Swiss-Prot
  Q99MQ2 ENTREZGENE
  Q9CX60 ENTREZGENE
UniProt Secondary Q99MQ2 UniProtKB/Swiss-Prot