Caprin2 (caprin family member 2) - Rat Genome Database

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Gene: Caprin2 (caprin family member 2) Mus musculus
Analyze
Symbol: Caprin2
Name: caprin family member 2
RGD ID: 1614922
MGI Page MGI
Description: Predicted to enable signaling receptor binding activity. Involved in positive regulation of dendritic spine morphogenesis. Predicted to be located in several cellular components, including centrosome; mitochondrion; and nucleoplasm. Predicted to be part of receptor complex. Predicted to be active in cytoplasm. Is expressed in eye; lens; lens fiber; lens pit; and lens vesicle. Orthologous to human CAPRIN2 (caprin family member 2).
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: AA536741; adiponectin r; Adir; AV149826; BC025636; C1q domain containing 1; C1q domain-containing protein 1; C1qdc1; caprin-2; cytoplasmic activation/proliferation-associated protein 2; Eeg1; expressed sequence AV149826; mKIAA1873; RNA granule protein 140; RNG1; rng140
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396148,743,990 - 148,797,756 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6148,743,990 - 148,797,735 (-)EnsemblGRCm39 Ensembl
GRCm386148,842,492 - 148,896,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6148,842,492 - 148,896,237 (-)EnsemblGRCm38mm10GRCm38
MGSCv376148,791,034 - 148,844,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366148,799,658 - 148,853,407 (-)NCBIMGSCv36mm8
Celera6151,880,474 - 151,934,157 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.62NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
centrosome  (IEA,ISO)
cytoplasm  (IBA,ISO,ISS)
cytosol  (IEA,ISO)
mitochondrion  (ISO,ISS)
nucleoplasm  (IEA,ISO)
plasma membrane  (IEA)
receptor complex  (ISO)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:12520002   PMID:14610273   PMID:14621295   PMID:15172686   PMID:16141072  
PMID:16141073   PMID:19275872   PMID:20516077   PMID:21267068   PMID:21677750   PMID:21873635   PMID:26177727   PMID:30973865   PMID:32325033   PMID:32839273   PMID:33230847   PMID:35361962  
PMID:38355793  


Genomics

Comparative Map Data
Caprin2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396148,743,990 - 148,797,756 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6148,743,990 - 148,797,735 (-)EnsemblGRCm39 Ensembl
GRCm386148,842,492 - 148,896,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6148,842,492 - 148,896,237 (-)EnsemblGRCm38mm10GRCm38
MGSCv376148,791,034 - 148,844,648 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366148,799,658 - 148,853,407 (-)NCBIMGSCv36mm8
Celera6151,880,474 - 151,934,157 (-)NCBICelera
Cytogenetic Map6G3NCBI
cM Map678.62NCBI
CAPRIN2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381230,709,553 - 30,754,951 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1230,709,552 - 30,823,302 (-)EnsemblGRCh38hg38GRCh38
GRCh371230,862,487 - 30,907,885 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361230,753,753 - 30,798,715 (-)NCBINCBI36Build 36hg18NCBI36
Celera1236,005,312 - 36,050,258 (-)NCBICelera
Cytogenetic Map12p11.21NCBI
HuRef1230,627,850 - 30,672,786 (-)NCBIHuRef
CHM1_11230,827,509 - 30,872,472 (-)NCBICHM1_1
T2T-CHM13v2.01230,584,217 - 30,698,047 (-)NCBIT2T-CHM13v2.0
Caprin2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84183,537,935 - 183,592,162 (-)NCBIGRCr8
mRatBN7.24181,806,105 - 181,860,754 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4181,806,575 - 181,860,830 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4188,077,467 - 188,135,699 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04183,861,997 - 183,920,226 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04182,482,491 - 182,540,722 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04183,304,993 - 183,374,195 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4183,305,813 - 183,374,195 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04247,436,446 - 247,504,605 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera4170,272,780 - 170,329,622 (-)NCBICelera
Cytogenetic Map4q44NCBI
Caprin2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555054,431,415 - 4,477,495 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555054,431,921 - 4,477,434 (+)NCBIChiLan1.0ChiLan1.0
CAPRIN2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21066,031,586 - 66,076,987 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11266,027,966 - 66,073,380 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01255,529,976 - 55,575,375 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11258,157,568 - 58,202,690 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1258,157,568 - 58,202,690 (+)Ensemblpanpan1.1panPan2
CAPRIN2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12717,518,966 - 17,560,866 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2717,517,155 - 17,560,511 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2728,857,745 - 28,900,747 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02717,700,516 - 17,743,641 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2717,700,477 - 17,743,641 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12717,509,755 - 17,552,938 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02717,540,916 - 17,584,108 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02729,010,138 - 29,053,645 (-)NCBIUU_Cfam_GSD_1.0
Caprin2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494578,118,412 - 78,162,571 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366074,950,765 - 4,995,936 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049366074,951,658 - 4,995,936 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CAPRIN2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl543,044,266 - 43,087,748 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1543,042,910 - 43,087,644 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2546,881,431 - 46,926,382 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CAPRIN2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11130,394,936 - 30,440,888 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1130,394,899 - 30,439,876 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660694,554,765 - 4,603,659 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Caprin2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247785,027,406 - 5,080,859 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247785,026,854 - 5,080,741 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Caprin2
2196 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:692
Count of miRNA genes:438
Interacting mature miRNAs:508
Transcripts:ENSMUST00000072324, ENSMUST00000111569, ENSMUST00000122909, ENSMUST00000127941, ENSMUST00000132535, ENSMUST00000139914, ENSMUST00000151640, ENSMUST00000154971
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4142079Skmw15_mskeletal muscle weight 15 (mouse)Not determined6116829851149588044Mouse
10449437Pas15_mpulmonary adenoma susceptibility 15 (mouse)6128180868149588044Mouse
1301686Trmq1_mT cell ratio modifier QTL 1 (mouse)Not determined6129330484149588044Mouse
1301620Insq8_minsulin QTL 8 (mouse)Not determined6129534979149588044Mouse
10053680Lith25_mlithogenic gene 25 (mouse)Not determined6128601582149588044Mouse
4141974Skmw14_mskeletal muscle weight 14 (mouse)Not determined6129330484149588044Mouse
1301084Bpq5_mblood pressure QTL 5 (mouse)Not determined6129330484149588044Mouse
14746990Manh61_mmandible shape 61 (mouse)6130156355149588044Mouse
4141295Rua_mraffinose acetate tasting (mouse)Not determined115546805149549364Mouse
1301027Hdlq12_mHDL QTL 12 (mouse)Not determined6128601582149588044Mouse
10766452Sle23_msystematic lupus erythematosus susceptibility 23 (mouse)6128601582149588044Mouse
1301152Athsq2_matherosclerosis susceptibility QTL 2 (mouse)Not determined6117059949149588044Mouse
1301927Etohcta6_methanol conditioned taste aversion 6 (mouse)Not determined6115578005149578150Mouse
4141194Cyx_mcycloheximide tasting (mouse)Not determined115546805149549364Mouse
14746999Mancz6_mmandible centroid size 6 (mouse)6130156355149588044Mouse
1558959Eamcd2_mexperimental autoimmune myocarditis 2 (mouse)Not determined6129953954149588044Mouse
1302089Wta2_mweight adult 2 (mouse)Not determined6125269523149588044Mouse
4141889Qui_mquinine sensitivity, taste (mouse)Not determined115546805149549364Mouse
1301804Bulb2_mbulb size 2 (mouse)Not determined6120416806149588044Mouse

Markers in Region
RH124496  
Mouse AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map6G3UniSTS
AV149826  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm386148,842,515 - 148,842,626UniSTSGRCm38
MGSCv376148,791,037 - 148,791,148UniSTSGRCm37
Celera6151,880,477 - 151,880,588UniSTS
Cytogenetic Map6G3UniSTS
Whitehead/MRC_RH61499.93UniSTS


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001301351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411635 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411638 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001411640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_181541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507039 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507040 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006507041 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255361 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_030255362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_036166093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942948 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942949 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_004942950 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC134542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK034179 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK049917 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK129460 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK140744 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC025636 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC027523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC092093 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125373 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC125375 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BE946020 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BR000873 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH466572 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CU302294 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  LT963066 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSMUST00000072324   ⟹   ENSMUSP00000072165
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,743,991 - 148,797,648 (-)Ensembl
GRCm38.p6 Ensembl6148,842,493 - 148,896,150 (-)Ensembl
Ensembl Acc Id: ENSMUST00000111569   ⟹   ENSMUSP00000107195
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,743,990 - 148,797,735 (-)Ensembl
GRCm38.p6 Ensembl6148,842,492 - 148,896,237 (-)Ensembl
Ensembl Acc Id: ENSMUST00000122909
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,795,668 - 148,797,107 (-)Ensembl
GRCm38.p6 Ensembl6148,894,170 - 148,895,609 (-)Ensembl
Ensembl Acc Id: ENSMUST00000127941   ⟹   ENSMUSP00000145114
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,743,991 - 148,752,894 (-)Ensembl
GRCm38.p6 Ensembl6148,842,493 - 148,851,396 (-)Ensembl
Ensembl Acc Id: ENSMUST00000132535
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,745,537 - 148,750,682 (-)Ensembl
GRCm38.p6 Ensembl6148,844,039 - 148,849,184 (-)Ensembl
Ensembl Acc Id: ENSMUST00000139914   ⟹   ENSMUSP00000121685
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,779,413 - 148,796,957 (-)Ensembl
GRCm38.p6 Ensembl6148,877,915 - 148,895,459 (-)Ensembl
Ensembl Acc Id: ENSMUST00000151640
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,746,065 - 148,752,865 (-)Ensembl
GRCm38.p6 Ensembl6148,844,567 - 148,851,367 (-)Ensembl
Ensembl Acc Id: ENSMUST00000154971
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,749,108 - 148,762,086 (-)Ensembl
GRCm38.p6 Ensembl6148,847,610 - 148,860,588 (-)Ensembl
Ensembl Acc Id: ENSMUST00000203014
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,743,990 - 148,745,152 (-)Ensembl
GRCm38.p6 Ensembl6148,842,492 - 148,843,654 (-)Ensembl
Ensembl Acc Id: ENSMUST00000204564
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,786,035 - 148,792,325 (-)Ensembl
GRCm38.p6 Ensembl6148,884,537 - 148,890,827 (-)Ensembl
Ensembl Acc Id: ENSMUST00000204942
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl6148,789,169 - 148,797,660 (-)Ensembl
GRCm38.p6 Ensembl6148,887,671 - 148,896,162 (-)Ensembl
RefSeq Acc Id: NM_001301351   ⟹   NP_001288280
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,743,990 - 148,797,680 (-)NCBI
GRCm386148,842,492 - 148,896,237 (-)NCBI
Celera6151,880,454 - 151,934,268 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001411635   ⟹   NP_001398564
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,743,990 - 148,797,680 (-)NCBI
RefSeq Acc Id: NM_001411636   ⟹   NP_001398565
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,743,990 - 148,792,305 (-)NCBI
RefSeq Acc Id: NM_001411637   ⟹   NP_001398566
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,743,990 - 148,797,680 (-)NCBI
RefSeq Acc Id: NM_001411638   ⟹   NP_001398567
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,743,990 - 148,792,305 (-)NCBI
RefSeq Acc Id: NM_001411639   ⟹   NP_001398568
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,789,070 - 148,797,680 (-)NCBI
RefSeq Acc Id: NM_001411640   ⟹   NP_001398569
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,789,070 - 148,797,680 (-)NCBI
RefSeq Acc Id: NM_181541   ⟹   NP_853519
RefSeq Status: REVIEWED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,743,990 - 148,797,680 (-)NCBI
GRCm386148,842,492 - 148,896,237 (-)NCBI
MGSCv376148,791,034 - 148,844,648 (-)RGD
Celera6151,880,454 - 151,934,268 (-)NCBI
cM Map6 ENTREZGENE
Sequence:
RefSeq Acc Id: XM_006507039   ⟹   XP_006507102
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,744,239 - 148,797,754 (-)NCBI
GRCm386148,842,492 - 148,896,257 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006507040   ⟹   XP_006507103
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,744,239 - 148,797,694 (-)NCBI
GRCm386148,842,492 - 148,896,257 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006507041   ⟹   XP_006507104
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,743,990 - 148,797,754 (-)NCBI
GRCm386148,842,492 - 148,896,257 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255361   ⟹   XP_030111221
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,744,239 - 148,797,736 (-)NCBI
GRCm386148,842,492 - 148,896,257 (-)NCBI
Sequence:
RefSeq Acc Id: XM_030255362   ⟹   XP_030111222
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,744,239 - 148,785,499 (-)NCBI
GRCm386148,842,492 - 148,884,003 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036166092   ⟹   XP_036021985
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,744,239 - 148,792,164 (-)NCBI
Sequence:
RefSeq Acc Id: XM_036166093   ⟹   XP_036021986
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,743,990 - 148,792,164 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942948
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,743,990 - 148,797,756 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942949
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,743,990 - 148,797,756 (-)NCBI
Sequence:
RefSeq Acc Id: XR_004942950
Type: NON-CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm396148,743,990 - 148,797,755 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001288280 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398564 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398565 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398566 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398567 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398568 (Get FASTA)   NCBI Sequence Viewer  
  NP_001398569 (Get FASTA)   NCBI Sequence Viewer  
  NP_853519 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507102 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507103 (Get FASTA)   NCBI Sequence Viewer  
  XP_006507104 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111221 (Get FASTA)   NCBI Sequence Viewer  
  XP_030111222 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021985 (Get FASTA)   NCBI Sequence Viewer  
  XP_036021986 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH25636 (Get FASTA)   NCBI Sequence Viewer  
  AAH92093 (Get FASTA)   NCBI Sequence Viewer  
  AAI25374 (Get FASTA)   NCBI Sequence Viewer  
  AAI25376 (Get FASTA)   NCBI Sequence Viewer  
  BAC98270 (Get FASTA)   NCBI Sequence Viewer  
  EDL10750 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000072165
  ENSMUSP00000072165.6
  ENSMUSP00000107195
  ENSMUSP00000107195.3
  ENSMUSP00000121685.2
  ENSMUSP00000145114.2
GenBank Protein FAA00698 (Get FASTA)   NCBI Sequence Viewer  
  Q05A80 (Get FASTA)   NCBI Sequence Viewer  
  SOR70284 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_853519   ⟸   NM_181541
- Peptide Label: isoform 1
- UniProtKB: Q58E31 (UniProtKB/Swiss-Prot),   Q6ZPG7 (UniProtKB/Swiss-Prot),   Q05A80 (UniProtKB/Swiss-Prot),   E4NKG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006507104   ⟸   XM_006507041
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_006507103   ⟸   XM_006507040
- Peptide Label: isoform X2
- Sequence:
RefSeq Acc Id: XP_006507102   ⟸   XM_006507039
- Peptide Label: isoform X1
- UniProtKB: Q58E31 (UniProtKB/Swiss-Prot),   Q6ZPG7 (UniProtKB/Swiss-Prot),   Q05A80 (UniProtKB/Swiss-Prot),   E4NKG5 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001288280   ⟸   NM_001301351
- Peptide Label: isoform 2
- UniProtKB: Q05A80 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: XP_030111221   ⟸   XM_030255361
- Peptide Label: isoform X1
- UniProtKB: Q58E31 (UniProtKB/Swiss-Prot),   Q05A80 (UniProtKB/Swiss-Prot),   Q6ZPG7 (UniProtKB/Swiss-Prot),   E4NKG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_030111222   ⟸   XM_030255362
- Peptide Label: isoform X4
Ensembl Acc Id: ENSMUSP00000121685   ⟸   ENSMUST00000139914
Ensembl Acc Id: ENSMUSP00000107195   ⟸   ENSMUST00000111569
Ensembl Acc Id: ENSMUSP00000145114   ⟸   ENSMUST00000127941
Ensembl Acc Id: ENSMUSP00000072165   ⟸   ENSMUST00000072324
RefSeq Acc Id: XP_036021986   ⟸   XM_036166093
- Peptide Label: isoform X6
RefSeq Acc Id: XP_036021985   ⟸   XM_036166092
- Peptide Label: isoform X4
RefSeq Acc Id: NP_001398566   ⟸   NM_001411637
- Peptide Label: isoform 4
RefSeq Acc Id: NP_001398564   ⟸   NM_001411635
- Peptide Label: isoform 1
- UniProtKB: Q58E31 (UniProtKB/Swiss-Prot),   Q05A80 (UniProtKB/Swiss-Prot),   Q6ZPG7 (UniProtKB/Swiss-Prot),   E4NKG5 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001398567   ⟸   NM_001411638
- Peptide Label: isoform 5
RefSeq Acc Id: NP_001398565   ⟸   NM_001411636
- Peptide Label: isoform 3
RefSeq Acc Id: NP_001398569   ⟸   NM_001411640
- Peptide Label: isoform 6
RefSeq Acc Id: NP_001398568   ⟸   NM_001411639
- Peptide Label: isoform 6
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q05A80-F1-model_v2 AlphaFold Q05A80 1-1031 view protein structure

Promoters
RGD ID:6839041
Promoter ID:MM_KWN:48318
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:ENSMUST00000072324,   OTTMUST00000056763,   OTTMUST00000056766,   OTTMUST00000056768,   UC009ETO.1
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv366148,844,471 - 148,844,971 (-)MPROMDB
RGD ID:6891568
Promoter ID:EPDNEW_M9235
Type:single initiation site
Name:Caprin2_1
Description:Mus musculus caprin family member 2 , transcript variant 2, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm386148,896,181 - 148,896,241EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:2448541 AgrOrtholog
Ensembl Genes ENSMUSG00000030309 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000072324 ENTREZGENE
  ENSMUST00000072324.12 UniProtKB/Swiss-Prot
  ENSMUST00000111569 ENTREZGENE
  ENSMUST00000111569.9 UniProtKB/Swiss-Prot
  ENSMUST00000127941.8 UniProtKB/TrEMBL
  ENSMUST00000139914.2 UniProtKB/TrEMBL
  ENSMUST00000204942 ENTREZGENE
Gene3D-CATH 2.60.120.40 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro C1q_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caprin UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caprin-1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caprin-1_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Tumour_necrosis_fac-like_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:232560 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
MGD MGI:2448541 ENTREZGENE
NCBI Gene 232560 ENTREZGENE
PANTHER CAPRIN-2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR22922 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam C1q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caprin-1_C UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Caprin-1_dimer UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Caprin2 PhenoGen
PRINTS COMPLEMNTC1Q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PROSITE C1Q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART C1Q UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF49842 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A0N4SVI1_MOUSE UniProtKB/TrEMBL
  CAPR2_MOUSE UniProtKB/Swiss-Prot
  D3Z2D4_MOUSE UniProtKB/TrEMBL
  E4NKG5 ENTREZGENE, UniProtKB/TrEMBL
  Q05A80 ENTREZGENE
  Q0P6A6_MOUSE UniProtKB/TrEMBL
  Q58E31 ENTREZGENE
  Q6ZPG7 ENTREZGENE
UniProt Secondary Q58E31 UniProtKB/Swiss-Prot
  Q6ZPG7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-04-05 Caprin2  caprin family member 2  AV149826  expressed sequence AV149826  Data merged from RGD:1607244 737654 PROVISIONAL