Foxf2 (forkhead box F2) - Rat Genome Database

Name: Foxf2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Advanced Search (OLGA)

Gene: Foxf2 (forkhead box F2) Mus musculus

Analyze

Symbol:

Foxf2

Name:

forkhead box F2

RGD ID:

1614458

MGI Page

MGI

Description:

Enables DNA binding activity and DNA-binding transcription factor activity. Involved in embryonic camera-type eye morphogenesis. Acts upstream of or within several processes, including embryonic digestive tract development; establishment of planar polarity of embryonic epithelium; and negative regulation of DNA-templated transcription. Located in nucleus. Is expressed in several structures, including alimentary system; ear; embryo mesenchyme; genitourinary system; and limb digit. Orthologous to human FOXF2 (forkhead box F2).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

Fkh20; forkhead box protein F2; forkhead homolog 20; FREA; FREAC2; L; LUN

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	FOXF2 (forkhead box F2)	HGNC	Ensembl, HGNC, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Rattus norvegicus (Norway rat):	Foxf2 (forkhead box F2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Foxf2 (forkhead box F2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	FOXF2 (forkhead box F2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	FOXF2 (forkhead box F2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Foxf2 (forkhead box F2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	FOXF2 (forkhead box F2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	FOXF2 (forkhead box F2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Foxf2 (forkhead box F2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	FOXF2 (forkhead box F2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	foxf2b (forkhead box F2b)	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|ZFIN)
Danio rerio (zebrafish):	foxf2a (forkhead box F2a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid\|ZFIN)
Caenorhabditis elegans (roundworm):	let-381	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|SonicParanoid)
Drosophila melanogaster (fruit fly):	bin	Alliance	DIOPT (InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	foxf2	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCm39 - Mouse Genome Assembly GRCm39

Position:

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	31,809,686 - 31,815,390 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	31,809,799 - 31,815,386 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	31,625,816 - 31,631,406 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	31,625,816 - 31,631,403 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	31,717,685 - 31,723,275 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	31,633,244 - 31,638,867 (+)	NCBI		MGSCv36	mm8
Celera	13	31,834,722 - 31,840,312 (+)	NCBI		Celera
Cytogenetic Map	13	A3.2	NCBI
cM Map	13	13.48	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Stroke (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (EXP)

arsenite(3-) (ISO)

benzo[a]pyrene (EXP,ISO)

bisphenol A (EXP)

bisphenol F (EXP,ISO)

buta-1,3-diene (EXP)

cadmium atom (EXP,ISO)

calcitriol (ISO)

carbon nanotube (EXP)

carmustine (ISO)

CGP 52608 (ISO)

chloroprene (EXP)

cisplatin (ISO)

copper(II) sulfate (ISO)

CU-O LINKAGE (ISO)

curcumin (ISO)

cypermethrin (ISO)

D-glucose (EXP)

dexamethasone (ISO)

dibenz[a,h]anthracene (ISO)

dioxygen (EXP)

elemental selenium (ISO)

etoposide (ISO)

fluoranthene (EXP)

folic acid (EXP)

fructose (EXP)

glucose (EXP)

hydrogen peroxide (ISO)

indometacin (ISO)

methylmercury chloride (ISO)

mitoxantrone (ISO)

N-ethyl-N-nitrosourea (EXP)

nickel sulfate (ISO)

selenium atom (ISO)

serpentine asbestos (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

temozolomide (ISO)

theophylline (ISO)

titanium dioxide (EXP)

triclosan (ISO)

trimellitic anhydride (EXP)

valproic acid (EXP,ISO)

vitamin E (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

animal organ morphogenesis (IBA)

embryonic camera-type eye morphogenesis (IMP)

embryonic digestive tract development (IGI)

establishment of planar polarity of embryonic epithelium (IGI,IMP)

extracellular matrix organization (IGI,IMP)

genitalia development (ISO)

negative regulation of DNA-templated transcription (IDA)

positive regulation of DNA-templated transcription (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of DNA-templated transcription (IEA)

regulation of proteasomal ubiquitin-dependent protein catabolic process (ISO)

regulation of protein polyubiquitination (ISO)

regulation of transcription by RNA polymerase II (IBA)

roof of mouth development (ISO)

Cellular Component

intracellular membrane-bounded organelle (ISO)

nuclear body (ISO)

nucleoplasm (ISO)

nucleus (IBA,IDA,ISO)

transcription regulator complex (ISO)

Molecular Function

DNA binding (IDA,ISO)

DNA-binding transcription activator activity, RNA polymerase II-specific (ISO)

DNA-binding transcription factor activity (IDA,ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA)

general transcription initiation factor binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

RNA polymerase II transcription regulatory region sequence-specific DNA binding (ISO)

sequence-specific DNA binding (ISO)

TFIIB-class transcription factor binding (ISO)

Phenotype Annotations Click to see Annotation Detail View

Mammalian Phenotype

abnormal anterior eye segment morphology (IAGP)

abnormal canal of Schlemm morphology (IAGP)

abnormal ciliary muscle morphology (IAGP)

abnormal ciliary process morphology (IAGP)

abnormal eye development (IAGP)

abnormal eye morphology (IAGP)

abnormal iridocorneal angle (IAGP)

abnormal iris stroma morphology (IAGP)

abnormal maxillary shelf morphology (IAGP)

abnormal optic canal morphology (IAGP)

abnormal palatine bone horizontal plate morphology (IAGP)

abnormal presphenoid bone morphology (IAGP)

abnormal pterygoid bone morphology (IAGP)

abnormal retina outer nuclear layer morphology (IAGP)

abnormal suckling behavior (IAGP)

abnormal tongue position (IAGP)

absent ciliary body (IAGP)

absent gastric milk in neonates (IAGP)

absent palatine bone horizontal plate (IAGP)

absent Schlemm's canal (IAGP)

absent soft palate (IAGP)

anterior iris synechia (IAGP)

ciliary body hypoplasia (IAGP)

cleft secondary palate (IAGP)

decreased body size (IAGP)

exophthalmos (IAGP)

failure of palatal shelf elevation (IAGP)

hypoplastic trabecular meshwork (IAGP)

meteorism (IAGP)

neonatal lethality, complete penetrance (IAGP)

optic nerve swelling (IAGP)

palatal shelves fail to meet at midline (IAGP)

postnatal growth retardation (IAGP)

postnatal lethality, complete penetrance (IAGP)

References

References - curated

#	Reference Title	Reference Citation
1.	Mouse MP Annotation Import Pipeline	RGD automated import pipeline
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:7957066	PMID:8626802	PMID:9676429	PMID:10349636	PMID:10822266	PMID:11042159	PMID:11076861	PMID:11217851	PMID:11804790	PMID:12466851	PMID:12477932	PMID:12812790
PMID:14681479	PMID:14745957	PMID:15107405	PMID:15457338	PMID:15618518	PMID:16141072	PMID:16141073	PMID:16439479	PMID:16691571	PMID:17261592	PMID:18023262	PMID:19304890
PMID:19879143	PMID:20009030	PMID:20059953	PMID:20553735	PMID:20589901	PMID:20932939	PMID:21267068	PMID:21873635	PMID:22022403	PMID:22711520	PMID:23376422	PMID:23946491
PMID:25356765	PMID:25631042	PMID:26120030	PMID:26238476	PMID:26745863	PMID:26930384	PMID:27180663	PMID:27425595	PMID:28069742	PMID:28286175	PMID:28506991	PMID:28797033
PMID:30153454	PMID:30285803	PMID:30292786	PMID:30352852	PMID:30561639	PMID:30565344	PMID:30638444	PMID:32040930	PMID:32616504	PMID:32758357	PMID:33898467	PMID:34671097
PMID:35668101	PMID:36196625	PMID:36227576	PMID:36314682	PMID:36369237	PMID:38110169

Genomics

Comparative Map Data

Foxf2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	13	31,809,686 - 31,815,390 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	13	31,809,799 - 31,815,386 (+)	Ensembl		GRCm39 Ensembl
GRCm38	13	31,625,816 - 31,631,406 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	13	31,625,816 - 31,631,403 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	13	31,717,685 - 31,723,275 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	13	31,633,244 - 31,638,867 (+)	NCBI		MGSCv36	mm8
Celera	13	31,834,722 - 31,840,312 (+)	NCBI		Celera
Cytogenetic Map	13	A3.2	NCBI
cM Map	13	13.48	NCBI

FOXF2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	1,389,576 - 1,395,603 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	1,389,576 - 1,395,603 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	6	1,389,811 - 1,395,838 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	1,335,068 - 1,340,831 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	6	1,335,067 - 1,340,831	NCBI
Celera	6	2,618,774 - 2,624,536 (+)	NCBI		Celera
Cytogenetic Map	6	p25.3	NCBI
HuRef	6	1,261,028 - 1,266,486 (+)	NCBI		HuRef
CHM1_1	6	1,392,174 - 1,397,939 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	6	1,252,762 - 1,258,791 (+)	NCBI		T2T-CHM13v2.0

Foxf2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	17	33,044,446 - 33,051,259 (-)	NCBI		GRCr8
mRatBN7.2	17	32,835,730 - 32,842,547 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	17	32,836,777 - 32,842,176 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	17	32,683,490 - 32,690,309 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	17	34,287,317 - 34,294,132 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	17	32,679,312 - 32,686,125 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	17	34,150,417 - 34,156,450 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
RGSC_v3.4	17	39,255,027 - 39,259,442 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	32,397,527 - 32,399,176 (-)	NCBI		Celera
Cytogenetic Map	17	p12	NCBI

Foxf2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955465	11,740,323 - 11,744,619 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955465	11,740,374 - 11,744,619 (-)	NCBI	ChiLan1.0	ChiLan1.0

FOXF2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	16,005,506 - 16,012,048 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	12,001,152 - 12,007,248 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	1,209,899 - 1,215,970 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	1,327,682 - 1,332,813 (+)	NCBI	panpan1.1	PanPan1.1	panPan2

FOXF2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	35	1,841,165 - 1,846,649 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	35	1,841,123 - 1,846,663 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	35	1,853,322 - 1,858,844 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	35	1,799,867 - 1,805,405 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	35	1,799,867 - 1,805,402 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	35	1,774,904 - 1,780,415 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	35	1,795,973 - 1,801,502 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	35	3,130,940 - 3,136,459 (+)	NCBI		UU_Cfam_GSD_1.0

Foxf2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	24,076,357 - 24,082,458 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936633	2,536,970 - 2,543,765 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936633	2,538,209 - 2,543,649 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FOXF2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	715,001 - 720,104 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	7	715,001 - 719,781 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	7	673,610 - 677,839 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FOXF2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	70,744,989 - 70,750,860 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	70,745,011 - 70,750,652 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666044	1,334,730 - 1,340,793 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Foxf2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624756	23,209,390 - 23,213,802 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624756	23,209,402 - 23,213,817 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Foxf2
135 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	250
Count of miRNA genes:	217
Interacting mature miRNAs:	231
Transcripts:	ENSMUST00000042054
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCm39)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357591	Tesq1_m	testis weight QTL 1 (mouse)			Not determined		13	20615512	55720517	Mouse
1301015	Sysbp2_m	systolic blood pressure 2 (mouse)			Not determined		13	20477612	59821605	Mouse
12738439	Twq4_m	testis weight QTL 4 (mouse)					13	31129110	65129110	Mouse
4142009	Pregq3_m	pregnancy QTL 3 (mouse)			Not determined		13	20615512	72385189	Mouse
10401111	Pgia40_m	proteoglycan induced arthritis 40 (mouse)			Not determined		13	27918469	61918560	Mouse
15039338	Nmrs34_m	NAFLD-associated magnetic resonance shift 34 (mouse)					13	221311	34221311	Mouse
1301255	Cd4ts6_m	CD4 T cell subset 6 (mouse)			Not determined		13	168545	34168684	Mouse
10755517	Chol15_m	cholesterol 15 (mouse)					13	30969467	64969467	Mouse
1301455	Bmd3_m	bone mineral density 3 (mouse)			Not determined		13	3477612	37477820	Mouse
10045625	Heal23_m	wound healing/regeneration 23 (mouse)			Not determined		13	3477612	37477820	Mouse
10402494	Igmsc1_m	immunoglobulin M secreting cells 1 (mouse)			Not determined		13	17168545	44918560	Mouse
13463469	Gssq1_m	glomerulosclerosis severity QTL 1 (mouse)					13	19060908	53061050	Mouse
10045624	Heal24_m	wound healing/regeneration (mouse)			Not determined		13	3477612	37477820	Mouse
12880423	V25Dq7_m	vitamin D inactive form serum level QTL 7 (mouse)					13	19583983	53583983	Mouse
1301367	Twq1_m	testis weight QTL 1 (mouse)			Not determined		13	3615512	37615672	Mouse
1558898	Hpi1_m	hapatic PMN infiltration 1 (mouse)			Not determined		13	4414025	53101640	Mouse
4142489	Ath25_m	atherosclerosis 25 (mouse)			Not determined			25836529	59836529	Mouse
10755533	Chol18_m	cholesterol 18 (mouse)					13	30969467	64969467	Mouse
10449140	Eosn2_m	eosinophil differential 2 (mouse)					13	221311	34221311	Mouse
1301880	Hypt_m	hypertension (mouse)			Not determined		13	18156792	52156924	Mouse
10045618	Heal17_m	wound healing/regeneration 17 (mouse)			Not determined		13	20746939	54747056	Mouse
10045621	Heal21_m	wound healing/regeneration 21 (mouse)			Not determined		13	28217379	62217515	Mouse
26884393	Humsd7_m	humerus midshaft diameter 7, 16 week (mouse)					13	3950000	76048119	Mouse
1301984	Pbd2_m	peak bone density 2 (mouse)			Not determined		13	17189508	38947406	Mouse
1300710	Pcd4ts2_m	p-glycoprotein positive CD4 T cell subset 2 (mouse)			Not determined		13	28210442	62210544	Mouse
1301733	Heal3_m	wound healing/regeneration 3 (mouse)			Not determined		13	3680200	37680343	Mouse
14696729	Kidlq2_m	kidney weight, left QTL 2 (mouse)					13	31344736	65344736	Mouse
4142147	Mvwf4_m	modifier of von Willebrand factor 4 (mouse)			Not determined			20477612	112898424	Mouse
1357802	Vtbt15_m	vertebral trabecular bone trait 15 (mouse)			Not determined		13	28217379	62217515	Mouse

Markers in Region

Foxf2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
GRCm38	13	31,630,866 - 31,630,956	UniSTS	GRCm38
MGSCv37	13	31,722,735 - 31,722,825	UniSTS	GRCm37
Celera	13	31,839,772 - 31,839,862	UniSTS
Cytogenetic Map	13	A4	UniSTS
cM Map	13		UniSTS

Foxf2

Mouse Assembly	Chr	Position (strand)	Source	JBrowse
Cytogenetic Map	13	A4	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_010225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AK132385	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AL590625	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AV365199	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AY965064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC137947	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC137949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH466561	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y11148	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y12293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	Y12294	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSMUST00000042054 ⟹ ENSMUSP00000046789

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39 Ensembl	13	31,809,799 - 31,815,386 (+)	Ensembl
GRCm38.p6 Ensembl	13	31,625,816 - 31,631,403 (+)	Ensembl

RefSeq Acc Id:

NM_010225 ⟹ NP_034355

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm39	13	31,809,686 - 31,815,390 (+)	NCBI
GRCm38	13	31,625,816 - 31,631,406 (+)	ENTREZGENE
MGSCv37	13	31,717,685 - 31,723,275 (+)	RGD
Celera	13	31,834,722 - 31,840,312 (+)	RGD
cM Map	13		ENTREZGENE

Sequence:

show sequence

AGGAGACGGTTGCGCAAGGAGCCGGCCGGAGGCTCGGAAGAGGGATGCGCGGGGCGTTGCCTCC
GACCCGCCGCCGCCGCCGCCGCCCGAAGCCCCAGAGGAGCTGAGGGAGGCGACGCCGAAGCGCT
GGCCCGCAGTGGCCCGGGCTGCAGCGCGGCCGGCGCAGTAGGGCACTCGCCCGATTTGTGGACC
GACCCGGCTCCGGCGCCGCCGATCCCGGTCCGGGGTCCGCCCCCCAGGCCCGGCCTCGTTCCCG
ATTCCCAGATGAGCACCGAGGGCGGGCCTCCGCCACCCCCGCCGCGCCCGCCGCCTGCCCCACT
CCGCCGCGCGTGCAGCCCGGCGCCCGGCGCGCTCCAGGCCGCCTTGATGAGCCCGCCACCCGCC
GCCACCCTGGAGTCCACTTCGTCGTCGTCATCATCATCCTCTGCCTCCTGTGCCTCGTCCTCTT
CTAACTCCGTCAGCGCCTCGGCCGGTGCTTGCAAGAGTGCGGCTAGCAGCGGCGGCGCGGGCGC
CGGGAGTGGAGGCACCAAGAAGGCAACCTCGGGGCTGCGGCGGCCGGAGAAGCCTCCTTACTCG
TACATCGCGCTCATCGTCATGGCCATCCAGAGCTCGCCCAGCAAGCGCCTGACGCTCAGTGAGA
TCTACCAGTTCCTACAGGCGCGCTTCCCCTTTTTCCGTGGCGCCTACCAGGGCTGGAAGAACTC
CGTGCGCCACAACCTCTCGCTCAACGAGTGCTTCATCAAGCTGCCCAAGGGCCTCGGGAGACCT
GGTAAGGGCCACTACTGGACCATCGACCCGGCCAGCGAATTCATGTTTGAGGAGGGTTCGTTCC
GCCGCCGGCCGCGCGGCTTCAGGCGGAAGTGCCAGGCTCTCAAACCCATGTACCATCGCGTGGT
GAGCGGCTTGGGCTTCGGGGCCTCGCTGCTGCCCCAGGGCTTCGACTTCCAAGCGCCCCCGTCG
GCGCCTCTGGGTTGCCACGGTCAAGGCGGTTATGGTGGCCTCGACATGATGCCCGCGGGCTATG
ATACAGGGGCGGGTGCTCCGGGCCACGCGCATCCACACCACCTCCACCACCACCACGTCCCCCA
CATGTCGCCCAACCCGGGCTCCACCTATATGGCCAGCTGCCCGGTGCCCGCAGGTCCTGCGGGC
GTCGGTGCGGCAGCGGGTGGCGGCGGTGGCGGCGGGGACTATGGGCCGGACAGCAGCAGCAGCC
CTGTGCCCTCATCCCCGGCTATGGCAAGCGCCATTGAGTGTCACTCGCCCTACACTAGCCCTGC
GGCACATTGGAGCTCGCCTGGCGCTTCACCTTACCTCAAGCAGCCGCCTGCCCTGACGCCAAGC
AGTAATCCCGCGGCCTCTGCTGGTCTGCACCCCAGCATGTCTTCCTACTCGTTGGAGCAGAGCT
ACTTGCACCAGAACGCCCGCGAGGATCTCTCAGTCGGACTGCCCCGTTACCAGCACCACTCCAC
TCCAGTGTGCGACAGGAAAGATTTCGTCCTCAATTTCAATGGCATTTCTTCTTTCCACCCTTCC
GCTAGTGGCTCTTATTATCACCATCATCACCAGAGCGTGTGCCAAGATATTAAGCCCTGTGTTA
TGTGAATGGACAGAGGCCTTGAAGGCCACTCTGCTCTCCCTCTTCTGCCTTCTTCTCCTCTCCC
CTCCGAGAGGGGCAGCCAGGAACTGCAACGGACTCACACTGTGCACGCTGGATAGCGAATAGCA
GTAAGTAGCACACCCATCACTTAGACAAATACCCAAGGGAGTTCTGCTCACCGATATTTGCCCG
GCCCCTGGAAGAGGAAACCTTTCGAAAGCTAATATCCCAGAAGAGCGACAGACAGAGGAGGTGA
CTACATGTAAGACATATGTTACTGTGTGGAGGACATAAAACTTTTCAGTTCTGGGGTGGCCATT
GCATTCACTAATCAGGGTCTGAAAAGGGAGGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGCTTTTCAAAATTGCAGTGCTAAAAGCACACAATTTCAAGAAAGCCTTCTCTAGTTCCCTGG
CTCAGTAGGACATTTCTTCCACCCACTCCCAGTCCCCCAACACTCCCTTCTTCGGATACAGGTG
CCAAAGAACATTGTGAAGAAATGAAGAACCGATAGTCTAGTTTAAGAAAGTGGCTCTCAGTATT
GTGACAGTACATTTTTACAAGGTTGTTTTTCTACCACCGTATTTTTAAAGTATTTTTATGATCT
TCGTATACTCACACTTCGCTTGTATTGTAAAAGGAGGGTATATTTGCACTTATGTATACTTTGA
CAGTTTGCCAAGATATTTTGATGTAAGGTTTTTTTTTTTTCAATAAAATGTGTATAACAAGT

hide sequence

Protein Sequences


Protein RefSeqs	NP_034355	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI37948	(Get FASTA)	NCBI Sequence Viewer
	AAI37950	(Get FASTA)	NCBI Sequence Viewer
	BAE21137	(Get FASTA)	NCBI Sequence Viewer
	CAA72035	(Get FASTA)	NCBI Sequence Viewer
	CAA72972	(Get FASTA)	NCBI Sequence Viewer
	EDL32365	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSMUSP00000046789
	ENSMUSP00000046789.3
GenBank Protein	O54743	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_034355 ⟸ NM_010225

- UniProtKB:

Q3V1L3 (UniProtKB/Swiss-Prot), B2RQI5 (UniProtKB/Swiss-Prot), Q78DW1 (UniProtKB/Swiss-Prot), O54743 (UniProtKB/Swiss-Prot)

- Sequence:

show sequence

MSTEGGPPPPPPRPPPAPLRRACSPAPGALQAALMSPPPAATLESTSSSSSSSSASCASSSSNS
VSASAGACKSAASSGGAGAGSGGTKKATSGLRRPEKPPYSYIALIVMAIQSSPSKRLTLSEIYQ
FLQARFPFFRGAYQGWKNSVRHNLSLNECFIKLPKGLGRPGKGHYWTIDPASEFMFEEGSFRRR
PRGFRRKCQALKPMYHRVVSGLGFGASLLPQGFDFQAPPSAPLGCHGQGGYGGLDMMPAGYDTG
AGAPGHAHPHHLHHHHVPHMSPNPGSTYMASCPVPAGPAGVGAAAGGGGGGGDYGPDSSSSPVP
SSPAMASAIECHSPYTSPAAHWSSPGASPYLKQPPALTPSSNPAASAGLHPSMSSYSLEQSYLH
QNAREDLSVGLPRYQHHSTPVCDRKDFVLNFNGISSFHPSASGSYYHHHHQSVCQDIKPCVM

hide sequence

Ensembl Acc Id:

ENSMUSP00000046789 ⟸ ENSMUST00000042054

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-O54743-F1-model_v2	AlphaFold	O54743	1-446	view protein structure

Promoters

RGD ID:

8680008

Promoter ID:

EPDNEW_M18035

Type:

initiation region

Name:

Foxf2_1

Description:

Mus musculus forkhead box F2 , mRNA.

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Mouse Assembly	Chr	Position (strand)	Source
GRCm38	13	31,625,912 - 31,625,972	EPDNEW

RGD ID:

6823912

Promoter ID:

MM_KWN:13715

Type:

CpG-Island

SO ACC ID:

SO:0000170

Source:

MPROMDB

Tissues & Cell Lines:

Lung

Transcripts:

ENSMUST00000042054

Position:

Mouse Assembly	Chr	Position (strand)	Source
MGSCv36	13	31,718,781 - 31,719,281 (+)	MPROMDB

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	MGI:1347479	AgrOrtholog
Ensembl Genes	ENSMUSG00000038402	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSMUST00000042054	ENTREZGENE
	ENSMUST00000042054.3	UniProtKB/Swiss-Prot
Gene3D-CATH	1.10.10.10	UniProtKB/Swiss-Prot
InterPro	Fork_head_dom	UniProtKB/Swiss-Prot
	Forkhead_box_regulator	UniProtKB/Swiss-Prot
	TF_fork_head_CS_1	UniProtKB/Swiss-Prot
	TF_fork_head_CS_2	UniProtKB/Swiss-Prot
	WH-like_DNA-bd_sf	UniProtKB/Swiss-Prot
	WH_DNA-bd_sf	UniProtKB/Swiss-Prot
KEGG Report	mmu:14238	UniProtKB/Swiss-Prot
MGD	MGI:1347479	ENTREZGENE
NCBI Gene	14238	ENTREZGENE
PANTHER	FORKHEAD BOX PROTEIN BINIOU	UniProtKB/Swiss-Prot
	FORKHEAD BOX PROTEIN F2	UniProtKB/Swiss-Prot
Pfam	Forkhead	UniProtKB/Swiss-Prot
PhenoGen	Foxf2	PhenoGen
PRINTS	FORKHEAD	UniProtKB/Swiss-Prot
PROSITE	FORK_HEAD_1	UniProtKB/Swiss-Prot
	FORK_HEAD_2	UniProtKB/Swiss-Prot
	FORK_HEAD_3	UniProtKB/Swiss-Prot
SMART	SM00339	UniProtKB/Swiss-Prot
Superfamily-SCOP	SSF46785	UniProtKB/Swiss-Prot
UniProt	B2RQI5	ENTREZGENE
	FOXF2_MOUSE	UniProtKB/Swiss-Prot, ENTREZGENE
	Q3V1L3	ENTREZGENE
	Q78DW1	ENTREZGENE
UniProt Secondary	B2RQI5	UniProtKB/Swiss-Prot
	Q3V1L3	UniProtKB/Swiss-Prot
	Q78DW1	UniProtKB/Swiss-Prot

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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