Zfand2b (zinc finger, AN1 type domain 2B) - Rat Genome Database

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Gene: Zfand2b (zinc finger, AN1 type domain 2B) Mus musculus
Analyze
Symbol: Zfand2b
Name: zinc finger, AN1 type domain 2B
RGD ID: 1614345
MGI Page MGI
Description: Enables K48-linked polyubiquitin modification-dependent protein binding activity and ubiquitin binding activity. Involved in proteasome-mediated ubiquitin-dependent protein catabolic process; protein targeting to ER; and regulation of insulin-like growth factor receptor signaling pathway. Located in endoplasmic reticulum and membrane. Part of proteasome complex. Orthologous to human ZFAND2B (zinc finger AN1-type containing 2B).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 1110060O18Rik; AIRAP-like protein; AN1-type zinc finger protein 2B; arsenite-inducible RNA-associated protein-like protein; C81256
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,145,290 - 75,148,270 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl175,145,290 - 75,148,273 (+)EnsemblGRCm39 Ensembl
GRCm38175,168,646 - 75,171,626 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,168,646 - 75,171,629 (+)EnsemblGRCm38mm10GRCm38
MGSCv37175,165,220 - 75,168,200 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,051,893 - 75,054,772 (+)NCBIMGSCv36mm8
Celera175,659,513 - 75,662,491 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.61NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10349636   PMID:10725249   PMID:10922068   PMID:11042159   PMID:11076861   PMID:11125038   PMID:11217851   PMID:12466851   PMID:12477932   PMID:15345747   PMID:15489334  
PMID:16141072   PMID:16141073   PMID:18467495   PMID:21677750   PMID:21873635   PMID:24160817   PMID:26692333   PMID:26876100   PMID:29676259   PMID:32325033  


Genomics

Comparative Map Data
Zfand2b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39175,145,290 - 75,148,270 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl175,145,290 - 75,148,273 (+)EnsemblGRCm39 Ensembl
GRCm38175,168,646 - 75,171,626 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl175,168,646 - 75,171,629 (+)EnsemblGRCm38mm10GRCm38
MGSCv37175,165,220 - 75,168,200 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36175,051,893 - 75,054,772 (+)NCBIMGSCv36mm8
Celera175,659,513 - 75,662,491 (+)NCBICelera
Cytogenetic Map1C4NCBI
cM Map138.61NCBI
ZFAND2B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382219,206,782 - 219,209,648 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2219,195,237 - 219,209,651 (+)EnsemblGRCh38hg38GRCh38
GRCh372220,071,504 - 220,074,370 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362219,779,782 - 219,782,617 (+)NCBINCBI36Build 36hg18NCBI36
Celera2213,841,245 - 213,844,076 (+)NCBICelera
Cytogenetic Map2q35NCBI
HuRef2211,924,804 - 211,927,670 (+)NCBIHuRef
CHM1_12220,077,341 - 220,080,208 (+)NCBICHM1_1
T2T-CHM13v2.02219,691,549 - 219,694,414 (+)NCBIT2T-CHM13v2.0
Zfand2b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8984,114,170 - 84,117,115 (+)NCBIGRCr8
mRatBN7.2976,665,466 - 76,668,447 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl976,665,546 - 76,668,445 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx985,110,107 - 85,113,024 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0990,238,998 - 90,241,915 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0988,625,211 - 88,628,128 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0982,370,887 - 82,373,843 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl982,370,924 - 82,373,839 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0982,140,181 - 82,143,104 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4974,451,779 - 74,454,698 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.1974,598,760 - 74,601,680 (+)NCBI
Celera974,235,977 - 74,238,896 (+)NCBICelera
Cytogenetic Map9q33NCBI
Zfand2b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495545314,221,002 - 14,225,681 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495545314,222,423 - 14,225,681 (-)NCBIChiLan1.0ChiLan1.0
ZFAND2B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v213121,837,231 - 121,840,092 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B121,852,196 - 121,855,057 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B106,464,364 - 106,467,217 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B225,055,835 - 225,058,647 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B225,055,969 - 225,058,647 (+)Ensemblpanpan1.1panPan2
ZFAND2B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.13725,757,454 - 25,760,366 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl3725,757,669 - 25,760,132 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha3726,583,410 - 26,586,262 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.03725,772,748 - 25,775,601 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3725,772,743 - 25,775,362 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13725,677,178 - 25,680,023 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03725,612,271 - 25,615,129 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03725,633,120 - 25,635,966 (+)NCBIUU_Cfam_GSD_1.0
Zfand2b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303175,282,849 - 175,285,754 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365691,625,374 - 1,632,642 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365691,625,712 - 1,628,533 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ZFAND2B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl15121,243,116 - 121,246,068 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.115121,243,116 - 121,246,075 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.215134,277,894 - 134,280,854 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ZFAND2B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.110105,110,419 - 105,113,614 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl10105,110,542 - 105,115,481 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366604094,282,967 - 94,286,172 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Zfand2b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248235,805,147 - 5,808,485 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248235,805,147 - 5,808,500 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Zfand2b
156 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1029
Count of miRNA genes:471
Interacting mature miRNAs:564
Transcripts:ENSMUST00000027394, ENSMUST00000160033, ENSMUST00000160282, ENSMUST00000160439, ENSMUST00000160903, ENSMUST00000161106, ENSMUST00000161657, ENSMUST00000162768
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11039528Ccc3_mcolitis susceptibility in the Collaborative Cross 3 (mouse)13680142195051546Mouse
1301714Vertcling_mvertical clinging (mouse)Not determined14293803176938167Mouse
1357847Jckm2_mjuvenile cystic kidney modifier 2 (mouse)Not determined174991977133290937Mouse
4142394Mssq1_mmandible size and shape QTL 1 (mouse)Not determined73615692107615830Mouse
18182931Metl1_mmetabolite locus 1, pyridoxate (mouse)14127539975275399Mouse
4141305Tgq9_mtriglyceride QTL 9 (mouse)Not determined5142160585421605Mouse
4141625Emo4_memotionality 4 (mouse)Not determined6807134586235027Mouse
10412185Hcs9_mhepatocarcinogenesis susceptibility 9 (mouse)Not determined163854690189303617Mouse
1301211Bbaa11_mB.burgdorferi-associated arthritis 11 (mouse)Not determined14888900682889210Mouse
1301722Cia9_mcollagen induced arthritis QTL 9 (mouse)Not determined145783900189303617Mouse
14697705Stsl3b_mSalmonella typhimurium susceptibility locus 3b (mouse)17413915981777715Mouse
13824984Twq5_mtestis weight QTL 5 (mouse)13069992184732197Mouse
1357721Sle17_msystematic lupus erythematosus susceptibility 17 (mouse)Not determined139132808126445310Mouse
1302146Cocrb1_mcocaine related behavior 1 (mouse)Not determined170133533104139557Mouse
1357505Vtbt1_mvertebral trabecular bone trait 1 (mouse)Not determined15626621490266360Mouse
4141032Wbcc1_mwhite blood cell count 1 (mouse)Not determined4225966776259667Mouse
14746998Mancz1_mmandible centroid size 1 (mouse)15794135191941351Mouse
1301444Alcw5_malcohol withdrawal 5 (mouse)Not determined15854919192549443Mouse
1300746Skl1_mskeletal size (tail length) 1 (mouse)Not determined15799197791992080Mouse
1558860W10q7_mweight 10 weeks QTL 7 (mouse)Not determined134760138150193871Mouse
14747009Manh49_mmandible shape 49 (mouse)15794135191941351Mouse
1301616Yaa2_mY-linked autoimmune acceleration 2 (mouse)Not determined14685469080854839Mouse
1300976Bmd19_mbone mineral density 19 (mouse)Not determined173266214108838414Mouse
1357488Splq3_mspleen weight QTL 3 (mouse)Not determined134760138150193871Mouse
10043965Obq24_mobesity QTL 24 (mouse)Not determined15089021684890216Mouse
1301430Cdcs2_mcytokine deficiency colitis susceptibility 2 (mouse)Not determined14889234582892485Mouse
4141914Gcsfis_mG-CSF induced splenomegaly (mouse)Not determined74516235148715579Mouse
1301748Abbp1_mA/J and C57BL/6 blood pressure 1 (mouse)Not determined162946755120529678Mouse
1558717Ses1a_msalmonella enteritidis susceptibility 1a (mouse)Not determined15672692290727077Mouse
1301304Hrq3_mheart rate quantitative locus 3 (mouse)Not determined173615692107615830Mouse
4142291Aec2_mautoimmune exocrinopathy 2 (mouse)Not determined52457737182250592Mouse
1357753Kidq2_mkidney weight QTL 2 (mouse)Not determined134760138150193871Mouse
1558905Gct7_mgranulosa cell tumorigenesis 7 (mouse)Not determined14734989481350013Mouse
4141393Mol2_mmodifier of LPS-response 2 (mouse)Not determined7162467978183144Mouse
1300989Lrdg1_mlight induced retinal degeneration 1 (mouse)Not determined173755175147125370Mouse
1301667Lxw5_mlupus BXSB x NZW 5 (mouse)Not determined15854919192549443Mouse
1558822Vas1_mautoimmune vasitis resistance 1 (mouse)Not determined14888900682889210Mouse
27095918Ulnl1_mulna length 1, 5 week (mouse)167339159129727737Mouse
1302119Cia15_mcollagen induced arthritis 15 (mouse)Not determined16588900688496101Mouse
1301670Ssta1_msusceptibility to Salmonella typhimurium antigens 1 (mouse)Not determined14594675579946882Mouse
1357741Nidd5k_mNidd5 on KK-A<y> (mouse)Not determined15597494889975057Mouse
1301162Skull1_mskull morphology 1 (mouse)Not determined15799197791992080Mouse
1301225Sle7_msystematic lupus erythematosus susceptibility 7 (mouse)Not determined14685469080854839Mouse
1300841Ssial1_msusceptibility to sialadenitis 1 (mouse)Not determined163920002153557562Mouse
1357679Egrm1_mearly growth rate, maternal effect 1 (mouse)Not determined15799197791992080Mouse
4142467Wbcq1_mwhite blood cell quantitative locus 1 (mouse)Not determined15626621490266360Mouse
1301166Thypr2_mthymocyte proliferative response 2 (mouse)Not determined14127312475273271Mouse
1301933Insq6_minsulin QTL 6 (mouse)Not determined15672692290727077Mouse

Markers in Region
UniSTS:234155  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38175,171,353 - 75,171,565UniSTSGRCm38
MGSCv37175,167,927 - 75,168,139UniSTSGRCm37
Celera175,662,218 - 75,662,430UniSTS
Cytogenetic Map1C3UniSTS
RH127040  
Mouse AssemblyChrPosition (strand)SourceJBrowse
GRCm38175,171,347 - 75,171,553UniSTSGRCm38
MGSCv37175,167,921 - 75,168,127UniSTSGRCm37
Celera175,662,212 - 75,662,418UniSTS
Cytogenetic Map1C3UniSTS
Whitehead/MRC_RH11090.5UniSTS


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000027394   ⟹   ENSMUSP00000027394
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,145,299 - 75,148,269 (+)Ensembl
GRCm38.p6 Ensembl175,168,655 - 75,171,625 (+)Ensembl
Ensembl Acc Id: ENSMUST00000160033
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,145,345 - 75,147,213 (+)Ensembl
GRCm38.p6 Ensembl175,168,701 - 75,170,569 (+)Ensembl
Ensembl Acc Id: ENSMUST00000160282
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,145,422 - 75,147,331 (+)Ensembl
GRCm38.p6 Ensembl175,168,778 - 75,170,687 (+)Ensembl
Ensembl Acc Id: ENSMUST00000160439   ⟹   ENSMUSP00000125086
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,145,290 - 75,148,273 (+)Ensembl
GRCm38.p6 Ensembl175,168,646 - 75,171,629 (+)Ensembl
Ensembl Acc Id: ENSMUST00000160903
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,145,310 - 75,146,275 (+)Ensembl
GRCm38.p6 Ensembl175,168,666 - 75,169,631 (+)Ensembl
Ensembl Acc Id: ENSMUST00000161106
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,145,290 - 75,148,269 (+)Ensembl
GRCm38.p6 Ensembl175,168,646 - 75,171,625 (+)Ensembl
Ensembl Acc Id: ENSMUST00000161657
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,145,302 - 75,146,536 (+)Ensembl
GRCm38.p6 Ensembl175,168,658 - 75,169,892 (+)Ensembl
Ensembl Acc Id: ENSMUST00000162768   ⟹   ENSMUSP00000124552
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,145,290 - 75,147,396 (+)Ensembl
GRCm38.p6 Ensembl175,168,646 - 75,170,752 (+)Ensembl
Ensembl Acc Id: ENSMUST00000186227   ⟹   ENSMUSP00000139757
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl175,145,572 - 75,148,046 (+)Ensembl
GRCm38.p6 Ensembl175,168,928 - 75,171,402 (+)Ensembl
RefSeq Acc Id: NM_001159905   ⟹   NP_001153377
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,145,290 - 75,148,270 (+)NCBI
GRCm38175,168,646 - 75,171,626 (+)ENTREZGENE
MGSCv37175,165,220 - 75,168,200 (+)RGD
Celera175,659,513 - 75,662,491 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_001159906   ⟹   NP_001153378
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,145,290 - 75,148,270 (+)NCBI
GRCm38175,168,646 - 75,171,626 (+)ENTREZGENE
MGSCv37175,165,220 - 75,168,200 (+)RGD
Celera175,659,513 - 75,662,491 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NM_026846   ⟹   NP_081122
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39175,145,379 - 75,148,270 (+)NCBI
GRCm38175,168,735 - 75,171,626 (+)NCBI
MGSCv37175,165,220 - 75,168,200 (+)RGD
Celera175,659,513 - 75,662,491 (+)RGD
cM Map1 ENTREZGENE
Sequence:
RefSeq Acc Id: NP_081122   ⟸   NM_026846
- UniProtKB: Q9D0W4 (UniProtKB/Swiss-Prot),   Q91X58 (UniProtKB/Swiss-Prot),   E0CY18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153377   ⟸   NM_001159905
- UniProtKB: Q9D0W4 (UniProtKB/Swiss-Prot),   Q91X58 (UniProtKB/Swiss-Prot),   E0CY18 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001153378   ⟸   NM_001159906
- UniProtKB: Q9D0W4 (UniProtKB/Swiss-Prot),   Q91X58 (UniProtKB/Swiss-Prot),   E0CY18 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSMUSP00000027394   ⟸   ENSMUST00000027394
Ensembl Acc Id: ENSMUSP00000139757   ⟸   ENSMUST00000186227
Ensembl Acc Id: ENSMUSP00000125086   ⟸   ENSMUST00000160439
Ensembl Acc Id: ENSMUSP00000124552   ⟸   ENSMUST00000162768
Protein Domains
AN1-type   UIM

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q91X58-F1-model_v2 AlphaFold Q91X58 1-257 view protein structure

Promoters
RGD ID:6818731
Promoter ID:MM_KWN:1214
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:3T3L1_Day0,   3T3L1_Day1,   3T3L1_Day2,   3T3L1_Day3,   3T3L1_Day4,   3T3L1_Day6,   BoneMarrow_0Hour,   BoneMarrow_2Hour,   BoneMarrow_4Hour,   Brain,   ES_Cell,   Kidney,   Liver,   Lung,   MEF_B4,   MEF_B6,   Spleen
Transcripts:NM_001159905,   NM_001159906,   NM_026846
Position:
Mouse AssemblyChrPosition (strand)Source
MGSCv36175,165,076 - 75,165,627 (+)MPROMDB
RGD ID:6874122
Promoter ID:EPDNEW_M512
Type:initiation region
Name:Zfand2b_1
Description:Mus musculus zinc finger, AN1 type domain 2B , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M513  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38175,168,646 - 75,168,706EPDNEW
RGD ID:6874126
Promoter ID:EPDNEW_M513
Type:single initiation site
Name:Zfand2b_2
Description:Mus musculus zinc finger, AN1 type domain 2B , transcript variant1, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_M512  
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm38175,168,764 - 75,168,824EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1916068 AgrOrtholog
Ensembl Genes ENSMUSG00000026197 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000027394 ENTREZGENE
  ENSMUST00000027394.12 UniProtKB/Swiss-Prot
  ENSMUST00000160439 ENTREZGENE
  ENSMUST00000160439.8 UniProtKB/Swiss-Prot
  ENSMUST00000162768 ENTREZGENE
  ENSMUST00000162768.8 UniProtKB/TrEMBL
  ENSMUST00000186227.2 UniProtKB/TrEMBL
Gene3D-CATH 4.10.1110.10 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro AN1-like_Znf UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  UIM_dom UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  Znf_AN1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report mmu:68818 UniProtKB/Swiss-Prot
MGD MGI:1916068 ENTREZGENE
NCBI Gene 68818 ENTREZGENE
PANTHER AN1-TYPE ZINC FINGER PROTEIN 2B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam UIM UniProtKB/TrEMBL
  zf-AN1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Zfand2b PhenoGen
PROSITE UIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZF_AN1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
SMART UIM UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  ZnF_AN1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Superfamily-SCOP SSF118310 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A0A087WPF5_MOUSE UniProtKB/TrEMBL
  E0CY18 ENTREZGENE, UniProtKB/TrEMBL
  Q91X58 ENTREZGENE
  Q9D0W4 ENTREZGENE
  ZFN2B_MOUSE UniProtKB/Swiss-Prot
UniProt Secondary Q9D0W4 UniProtKB/Swiss-Prot