Amtn (amelotin) - Rat Genome Database

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Gene: Amtn (amelotin) Mus musculus
Analyze
Symbol: Amtn
Name: amelotin
RGD ID: 1614326
MGI Page MGI
Description: Involved in odontogenesis of dentin-containing tooth and positive regulation of enamel mineralization. Located in basement membrane and cell-cell junction. Human ortholog(s) of this gene implicated in amelogenesis imperfecta type 3B. Orthologous to human AMTN (amelotin).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 5430427O21Rik
RGD Orthologs
Human
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39588,523,967 - 88,533,775 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl588,523,967 - 88,533,775 (+)EnsemblGRCm39 Ensembl
GRCm38588,376,108 - 88,385,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl588,376,108 - 88,385,916 (+)EnsemblGRCm38mm10GRCm38
MGSCv37588,805,133 - 88,814,941 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36589,450,669 - 89,460,477 (+)NCBIMGSCv36mm8
Celera586,527,988 - 86,537,811 (+)NCBICelera
Cytogenetic Map5E1NCBI
cM Map543.56NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
basement membrane  (IBA,IDA,ISO)
cell-cell junction  (IBA,IDA,ISO)
extracellular matrix  (IMP,ISO,ISS)
extracellular region  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Mammalian Phenotype
References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:15935406   PMID:16141072   PMID:16141073   PMID:16304441   PMID:16787391   PMID:19351503   PMID:21285247  
PMID:21873635   PMID:22231912   PMID:25158173   PMID:25407797   PMID:25715379   PMID:26620968   PMID:27412008   PMID:27502207   PMID:28436474   PMID:28650075   PMID:29436627   PMID:29657250  
PMID:29684584   PMID:30158339   PMID:32674056  


Genomics

Comparative Map Data
Amtn
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39588,523,967 - 88,533,775 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl588,523,967 - 88,533,775 (+)EnsemblGRCm39 Ensembl
GRCm38588,376,108 - 88,385,916 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl588,376,108 - 88,385,916 (+)EnsemblGRCm38mm10GRCm38
MGSCv37588,805,133 - 88,814,941 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36589,450,669 - 89,460,477 (+)NCBIMGSCv36mm8
Celera586,527,988 - 86,537,811 (+)NCBICelera
Cytogenetic Map5E1NCBI
cM Map543.56NCBI
AMTN
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38470,518,569 - 70,532,743 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl470,518,569 - 70,532,743 (+)EnsemblGRCh38hg38GRCh38
GRCh37471,384,286 - 71,398,460 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36471,418,887 - 71,433,048 (+)NCBINCBI36Build 36hg18NCBI36
Celera468,742,456 - 68,756,611 (+)NCBICelera
Cytogenetic Map4q13.3NCBI
HuRef467,186,745 - 67,200,947 (+)NCBIHuRef
CHM1_1471,420,321 - 71,434,469 (+)NCBICHM1_1
T2T-CHM13v2.0473,859,546 - 73,873,706 (+)NCBIT2T-CHM13v2.0
Amtn
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81419,932,664 - 19,945,223 (-)NCBIGRCr8
mRatBN7.21419,648,624 - 19,661,181 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1419,648,625 - 19,661,181 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1419,637,910 - 19,650,433 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01420,956,785 - 20,969,312 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01419,659,453 - 19,672,010 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01421,282,488 - 21,301,966 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1421,286,510 - 21,299,068 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01421,199,165 - 21,211,724 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41421,231,281 - 21,243,840 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1418,985,029 - 18,997,588 (-)NCBICelera
Cytogenetic Map14p22NCBI
Amtn
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554472,423,136 - 2,433,150 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554472,422,189 - 2,433,633 (-)NCBIChiLan1.0ChiLan1.0
AMTN
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2359,552,262 - 59,566,420 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1459,747,310 - 59,761,467 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0453,691,674 - 53,705,831 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1460,036,818 - 60,050,965 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl460,036,818 - 60,050,965 (-)Ensemblpanpan1.1panPan2
AMTN
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11359,855,278 - 59,867,133 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1359,852,490 - 59,867,516 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1359,589,466 - 59,601,272 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01360,661,869 - 60,673,675 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1360,659,061 - 60,673,692 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11360,276,328 - 60,288,126 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01359,767,889 - 59,779,694 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01360,914,773 - 60,926,557 (+)NCBIUU_Cfam_GSD_1.0
Amtn
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440528515,752,086 - 15,763,534 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365984,203,255 - 4,215,567 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365984,204,094 - 4,210,492 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
AMTN
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl867,312,972 - 67,326,730 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1867,312,108 - 67,327,775 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2871,220,759 - 71,234,938 (+)NCBISscrofa10.2Sscrofa10.2susScr3
AMTN
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1718,982,101 - 19,041,207 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660843,844,544 - 3,856,990 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Amtn
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248901,875,456 - 1,936,427 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Amtn
294 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:68
Interacting mature miRNAs:73
Transcripts:ENSMUST00000073363
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
11341716Rvfs3_mRift Valley fever susceptibility 3 (mouse)526441234138455402Mouse
4140990Lgq6_mlate growth QTL 6 (mouse)Not determined32133234100777931Mouse
4141219W10q16_mweight 10 weeks QTL 16 (mouse)Not determined32133234100777931Mouse
1301524Lmb2_mlupus in MRL and B6 F2 cross (mouse)Not determined537581488112465722Mouse
11041665Lmr24_mleishmaniasis resistance 24 (mouse)552694462107321041Mouse
11041899Lmr24a_mleishmaniasis resistance 24a (mouse)552694462107321041Mouse
4142064Tmc1m4_mTmc1 modifier 4 (mouse)Not determined554500177127001072Mouse
1301243Bmd2_mbone mineral density 2 (mouse)Not determined555388334100455525Mouse
4142317Rgcs1_mretinal ganglion cell susceptible 1 (mouse)Not determined55388334108762627Mouse
13464248Ahl13_mage related hearing loss, early onset 13 (mouse)55564587489645995Mouse
10043962Obq27_mobesity QTL 27 (mouse)Not determined55628565590285655Mouse
10044005Ahl7_mage related hearing loss 7 (mouse)Not determined55833050292330641Mouse
11040591Lmr3c_mleishmaniasis resistance 3c (mouse)55960280193602980Mouse
11040592Lmr3d_mleishmaniasis resistance 3d (mouse)55960280193602980Mouse
11040589Lmr3a_mleishmaniasis resistance 3a (mouse)55960280193602980Mouse
11040590Lmr3b_mleishmaniasis resistance 3b (mouse)55960280193602980Mouse
1301843Listr1_mlisteriosis resistance 1 (mouse)Not determined56024608194246203Mouse
13464247Ahl14_mage related hearing loss, early onset 14 (mouse)56040306294403160Mouse
11252124Modvl6_mmodifier of vacuolated lens 6 (mouse)56265056896650688Mouse
4142428Modvl1_mmodifier of vacuolated lens 1 (mouse)Not determined6265056896650688Mouse
1301010ahl2_mage related hearing loss 2 (mouse)Not determined56265056896650688Mouse
13464250Ahl15_mage related hearing loss, early onset 15 (mouse)56265056896650688Mouse
10045972Tir5_mtrypanosome infection response 5 (mouse)Not determined563705442104387065Mouse
11049560Lmr24d_mleishmaniasis resistance 24d (mouse)56437487798374996Mouse
12904739M2fscn2_mmodifier 2 of FSCN2 (mouse)566529661100529661Mouse
12904740M1fscn2_mmodifier 1 of Fscn2 (mouse)566529661100529661Mouse
26884395Humsd2_mhumerus midshaft diameter 2, 10 week (mouse)570057343132528839Mouse
10043993Hbnr10_mHeligmosomoides bakeri nematode resistance 10 (mouse)Not determined572418876106419011Mouse
27226719Tibw6_mtibia width 6, proximal, 16 week (mouse)572857343139985755Mouse
25314315Mlh1fc4_mMLH1 foci count 4 (mouse)574460661132528839Mouse
13506928Recrq8_mrecombination rate in male meiosis QTL 8 (mouse)574460661132528839Mouse
4141124Dshv2_mdorsal hippocampal volume 2 (mouse)Not determined57531534898019803Mouse
1357431Cia27_mcollagen induced arthritis 27 (mouse)Not determined575315348120018629Mouse
4141438Skmw13_mskeletal muscle weight 13 (mouse)Not determined576190263110190479Mouse
4141505Chlq14_mcirculating hormone level QTL 14 (mouse)Not determined576280786110280917Mouse
1300986Hdlq2_mHDL QTL 2 (mouse)Not determined576280786110280917Mouse
1301691Cdcs10_mcytokine deficiency colitis susceptibility 10 (mouse)Not determined576280786110280917Mouse
1301829Thyls2_mthymic lymphoma susceptibility 2 (mouse)Not determined576445064110445225Mouse
1301713Dbsty2_mdiabesity 2 (mouse)Not determined576445064110445225Mouse
13464249Ahl16_mage related hearing loss, early onset 16 (mouse)576445064110445225Mouse
1300931Cocrb6_mcocaine related behavior 6 (mouse)Not determined576445064110445225Mouse
12910784Pwgrq15_mpost-weaning growth rate QTL 15 (mouse)57717582397658215Mouse
12910816Ogrq2_moverall growth rate QTL 2 (mouse)57717582397658215Mouse
10401246Bglu13_mblood glucose level 13 (mouse)Not determined579539640113539786Mouse
10755524Mono1_mmonocyte differential 1 (mouse)580849259114849259Mouse
1301419Cypr3_mcytokine production 3 (mouse)Not determined581019649115019803Mouse
10401245Bglu18_mblood glucose level 18 (mouse)Not determined582838468116838597Mouse
13464242Ahl17_mage related hearing loss, early onset 17 (mouse)582838468116838597Mouse
12738408Lfibq5_mliver fibrosis QTL 5 (mouse)58478385389966041Mouse
10043958Chldq12_mcholesterol and HDL QTL 12 (mouse)Not determined587386871121387065Mouse
1301126Bwem1_mbody weight day 30 males 1 (mouse)Not determined587386871121387065Mouse
13464241Ahl18_mage related hearing loss, early onset 18 (mouse)587386871121387065Mouse
1300801Drb2_mdopamine receptor binding 2 (mouse)Not determined587386871121387065Mouse
1301399Cpfd3_mcerebellum pattern fissures (mouse)Not determined587386871121387065Mouse


Expression


Sequence


RefSeq Acc Id: ENSMUST00000073363   ⟹   ENSMUSP00000073081
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl588,523,967 - 88,533,775 (+)Ensembl
GRCm38.p6 Ensembl588,376,108 - 88,385,916 (+)Ensembl
RefSeq Acc Id: NM_027793   ⟹   NP_082069
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39588,523,967 - 88,533,775 (+)NCBI
GRCm38588,376,108 - 88,385,916 (+)ENTREZGENE
MGSCv37588,805,133 - 88,814,941 (+)RGD
Celera586,527,988 - 86,537,811 (+)RGD
cM Map5 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_082069 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB30704 (Get FASTA)   NCBI Sequence Viewer  
  EDL05363 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000073081
  ENSMUSP00000073081.2
GenBank Protein Q9D3J8 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_082069   ⟸   NM_027793
- Peptide Label: precursor
- UniProtKB: Q9D3J8 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: ENSMUSP00000073081   ⟸   ENSMUST00000073363

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D3J8-F1-model_v2 AlphaFold Q9D3J8 1-213 view protein structure


Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1918671 AgrOrtholog
Ensembl Genes ENSMUSG00000029282 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSMUST00000073363 ENTREZGENE
  ENSMUST00000073363.2 UniProtKB/Swiss-Prot
InterPro Amelotin UniProtKB/Swiss-Prot
KEGG Report mmu:71421 UniProtKB/Swiss-Prot
MGD MGI:1918671 ENTREZGENE
NCBI Gene 71421 ENTREZGENE
PANTHER AMELOTIN UniProtKB/Swiss-Prot
  PTHR36858 UniProtKB/Swiss-Prot
Pfam Amelotin UniProtKB/Swiss-Prot
PhenoGen Amtn PhenoGen
UniProt AMTN_MOUSE UniProtKB/Swiss-Prot, ENTREZGENE