Tomm20l (translocase of outer mitochondrial membrane 20-like) - Rat Genome Database

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Gene: Tomm20l (translocase of outer mitochondrial membrane 20-like) Mus musculus
Analyze
Symbol: Tomm20l
Name: translocase of outer mitochondrial membrane 20-like
RGD ID: 1607978
MGI Page MGI
Description: Predicted to enable mitochondrion targeting sequence binding activity. Predicted to contribute to protein transmembrane transporter activity. Predicted to be involved in protein import into mitochondrial matrix and tRNA import into mitochondrion. Predicted to be part of mitochondrial outer membrane translocase complex. Orthologous to human TOMM20L (translocase of outer mitochondrial membrane 20 like).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 4930553D19Rik; TOMM20-like protein 1; translocase of outer mitochondrial membrane 20 homolog (yeast)-like; translocase of outer mitochondrial membrane 20 homolog-like
RGD Orthologs
Human
Rat
Bonobo
Dog
Squirrel
Pig
Green Monkey
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCm39 - Mouse Genome Assembly GRCm39
Position:
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391271,158,202 - 71,169,996 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1271,158,202 - 71,169,995 (+)EnsemblGRCm39 Ensembl
GRCm381271,111,428 - 71,123,222 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1271,111,428 - 71,123,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv371272,212,415 - 72,224,209 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1272,211,475 - 72,223,254 (+)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1229.39NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Mouse MP Annotation Import Pipeline RGD automated import pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10349636   PMID:11042159   PMID:11076861   PMID:11217851   PMID:12466851   PMID:12477932   PMID:14610273   PMID:16141072   PMID:16141073   PMID:21677750   PMID:21873635   PMID:27626380  
PMID:30973865   PMID:34290169   PMID:38355793  


Genomics

Comparative Map Data
Tomm20l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391271,158,202 - 71,169,996 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1271,158,202 - 71,169,995 (+)EnsemblGRCm39 Ensembl
GRCm381271,111,428 - 71,123,222 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1271,111,428 - 71,123,221 (+)EnsemblGRCm38mm10GRCm38
MGSCv371272,212,415 - 72,224,209 (+)NCBIGRCm37MGSCv37mm9NCBIm37
Celera1272,211,475 - 72,223,254 (+)NCBICelera
Cytogenetic Map12C2NCBI
cM Map1229.39NCBI
TOMM20L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381458,395,930 - 58,417,080 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1458,395,928 - 58,408,702 (+)EnsemblGRCh38hg38GRCh38
GRCh371458,862,648 - 58,875,420 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361457,932,385 - 57,945,172 (+)NCBINCBI36Build 36hg18NCBI36
Celera1438,912,616 - 38,925,391 (+)NCBICelera
Cytogenetic Map14q23.1NCBI
HuRef1439,027,270 - 39,040,037 (+)NCBIHuRef
CHM1_11458,801,207 - 58,813,988 (+)NCBICHM1_1
T2T-CHM13v2.01452,602,950 - 52,624,123 (+)NCBIT2T-CHM13v2.0
Tomm20l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8695,335,681 - 95,346,116 (+)NCBIGRCr8
mRatBN7.2689,594,016 - 89,612,070 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl689,599,873 - 89,610,147 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0693,538,377 - 93,549,533 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl693,539,271 - 93,651,154 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.06103,004,605 - 103,015,121 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4693,208,302 - 93,218,521 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera688,083,111 - 88,094,268 (+)NCBICelera
Cytogenetic Map6q24NCBI
TOMM20L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21559,517,614 - 59,531,404 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11458,728,289 - 58,748,838 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01438,987,239 - 39,001,441 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11457,255,851 - 57,268,343 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1457,255,851 - 57,268,343 (+)Ensemblpanpan1.1panPan2
TOMM20L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1833,747,643 - 33,761,655 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl833,747,284 - 33,755,880 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha833,508,932 - 33,517,299 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0833,989,091 - 33,997,455 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl833,989,091 - 33,997,435 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1833,601,633 - 33,609,978 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0833,669,762 - 33,678,101 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0834,044,093 - 34,052,460 (+)NCBIUU_Cfam_GSD_1.0
Tomm20l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864071,392,612 - 71,412,432 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049364952,779,851 - 2,786,233 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TOMM20L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1187,475,006 - 187,486,729 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11187,474,745 - 187,496,040 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21208,367,169 - 208,408,948 (+)NCBISscrofa10.2Sscrofa10.2susScr3
TOMM20L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12435,578,996 - 35,591,613 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2435,579,540 - 35,591,495 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605323,859,161 - 23,881,058 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0

Variants

.
Variants in Tomm20l
368 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:83
Count of miRNA genes:81
Interacting mature miRNAs:83
Transcripts:ENSMUST00000021482
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCm39)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1357749Vtbt13_mvertebral trabecular bone trait 13 (mouse)Not determined125313200287132145Mouse
14746976Manh73_mmandible shape 73 (mouse)126585713199857131Mouse
4142234Tmc1m3_mTmc1 modifier 3 (mouse)Not determined12541844077031203Mouse
1301046Par3_mpulmonary adenoma resistance 3 (mouse)Not determined126395670897956883Mouse
27226776Tibl6_mtibia length 6, 5 week (mouse)126064678692666774Mouse
1357757Lnopy2_mlens opacity 2 (mouse)Not determined125284662686846796Mouse
1301337Cdcs8_mcytokine deficiency colitis susceptibility 8 (mouse)Not determined126468908398689229Mouse
1300633Cdcs7_mcytokine deficiency colitis susceptibility 7 (mouse)Not determined126468908398689229Mouse
27226771Tibl14_mtibia length 14, 10 week (mouse)126834677498766259Mouse
4142002Tbqt3_mtibia bone quality traits 3 (mouse)Not determined1235285496109936243Mouse
13504832Bacszq2_mbaculum size QTL 2 (mouse)125694579875345787Mouse
10043895Bw20_mbody weight QTL 20 (mouse)Not determined126230825296308252Mouse
27226797Scvln19_msacral vertebrae length 2, 16 week (mouse)126214678699466259Mouse
1357479Splwt1_mspleen weight 1 (mouse)Not determined124169317590887526Mouse
12832727Ahrq1_mairway hyperresponsiveness QTL 1 (mouse)125469591082665939Mouse
1558978Cplaq10_mcircadian period of locomotor activity 10 (mouse)Not determined121534102679040364Mouse
1301574Lmblgq5_mlimb length QTL 5 (mouse)Not determined121759644780956883Mouse
10043948Pbft6_mpercent body fat 6 (mouse)Not determined126120542795205427Mouse
27226793Feml10_mfemur length 10, 5 week (mouse)1268346774113363620Mouse
27226728Tibl20_mtibia length 20, 16 week (mouse)125914678693866774Mouse
1301476Pbwg12_mpostnatal body weight growth 12 (mouse)Not determined126204016496040364Mouse
13207568Tcq14_mtotal cholesterol QTL 14 (mouse)121166000197176774Mouse
27226753Femd7_mfemur midshaft diameter 7, 10 week (mouse)12955000084146774Mouse


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSMUST00000021482   ⟹   ENSMUSP00000021482
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1271,158,219 - 71,169,995 (+)Ensembl
GRCm38.p6 Ensembl1271,111,445 - 71,123,221 (+)Ensembl
Ensembl Acc Id: ENSMUST00000220834   ⟹   ENSMUSP00000152608
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1271,158,202 - 71,169,995 (+)Ensembl
GRCm38.p6 Ensembl1271,111,428 - 71,123,221 (+)Ensembl
Ensembl Acc Id: ENSMUST00000221962
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm39 Ensembl1271,158,244 - 71,169,901 (+)Ensembl
GRCm38.p6 Ensembl1271,111,470 - 71,123,127 (+)Ensembl
RefSeq Acc Id: NM_029227   ⟹   NP_083503
RefSeq Status: VALIDATED
Type: CODING
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm391271,158,202 - 71,169,996 (+)NCBI
GRCm381271,111,428 - 71,123,222 (+)ENTREZGENE
MGSCv371272,212,415 - 72,224,209 (+)RGD
Celera1272,211,475 - 72,223,254 (+)RGD
cM Map12 ENTREZGENE
Sequence:
Protein Sequences
Protein RefSeqs NP_083503 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein BAB30114 (Get FASTA)   NCBI Sequence Viewer  
  EDL36560 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSMUSP00000021482
  ENSMUSP00000021482.5
  ENSMUSP00000152608.2
GenBank Protein Q9D4V6 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_083503   ⟸   NM_029227
- UniProtKB: Q9D4V6 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSMUSP00000021482   ⟸   ENSMUST00000021482
Ensembl Acc Id: ENSMUSP00000152608   ⟸   ENSMUST00000220834

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9D4V6-F1-model_v2 AlphaFold Q9D4V6 1-152 view protein structure

Promoters
RGD ID:8678466
Promoter ID:EPDNEW_M17264
Type:initiation region
Name:Tomm20l_1
Description:Mus musculus translocase of outer mitochondrial membrane 20-like, mRNA.
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Mouse AssemblyChrPosition (strand)Source
GRCm381271,111,425 - 71,111,485EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene MGI:1922516 AgrOrtholog
Ensembl Genes ENSMUSG00000021078 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENSMUST00000021482 ENTREZGENE
  ENSMUST00000021482.6 UniProtKB/Swiss-Prot
  ENSMUST00000220834.2 UniProtKB/TrEMBL
Gene3D-CATH 1.20.960.10 UniProtKB/Swiss-Prot
InterPro MAS20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  MAS20_rcpt_metazoan UniProtKB/Swiss-Prot
  Tom20_dom_sf UniProtKB/Swiss-Prot
KEGG Report mmu:75266 UniProtKB/Swiss-Prot
MGD MGI:1922516 ENTREZGENE
NCBI Gene 75266 ENTREZGENE
PANTHER PTHR12430 UniProtKB/Swiss-Prot
  TOMM20-LIKE PROTEIN 1 UniProtKB/Swiss-Prot
Pfam MAS20 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tomm20l PhenoGen
PIRSF MAS20_rcpt UniProtKB/Swiss-Prot
PRINTS EUOM20RECPTR UniProtKB/Swiss-Prot
  OM20RECEPTOR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF47157 UniProtKB/Swiss-Prot
UniProt A0A1Y7VJW4_MOUSE UniProtKB/TrEMBL
  Q9D4V6 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2018-03-27 Tomm20l  translocase of outer mitochondrial membrane 20-like    translocase of outer mitochondrial membrane 20 homolog (yeast)-like  Symbol and/or name change 5135510 APPROVED