DYNC1LI1 (dynein cytoplasmic 1 light intermediate chain 1) - Rat Genome Database

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Gene: DYNC1LI1 (dynein cytoplasmic 1 light intermediate chain 1) Homo sapiens
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Symbol: DYNC1LI1
Name: dynein cytoplasmic 1 light intermediate chain 1
RGD ID: 1606006
HGNC Page HGNC:18745
Description: Enables GDP binding activity; dynein heavy chain binding activity; and protein-macromolecule adaptor activity. Involved in several processes, including early endosome to recycling endosome transport; positive regulation of mitotic cell cycle spindle assembly checkpoint; and regulation of vesicle-mediated transport. Located in endocytic vesicle membrane; kinetochore; and microtubule cytoskeleton. Part of cytoplasmic dynein complex.
Type: protein-coding
RefSeq Status: REVIEWED
Previously known as: cytoplasmic dynein 1 light intermediate chain 1; DLC-A; DLIC-1; DNCLI1; dynein light chain A; dynein light chain-A; dynein light intermediate chain 1, cytosolic; dynein, cytoplasmic 1, light intermediate chain 1; dynein, cytoplasmic, light intermediate polypeptide 1; FLJ10219; LIC1
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Related Pseudogenes: DYNC1LI1P1  
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,525,974 - 32,570,858 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,525,974 - 32,570,858 (-)Ensemblhg38GRCh38
GRCh37332,567,466 - 32,612,350 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,542,470 - 32,587,346 (-)NCBIBuild 36Build 36hg18NCBI36
Celera332,504,552 - 32,549,458 (-)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,502,312 - 32,547,668 (-)NCBIHuRef
CHM1_1332,517,445 - 32,562,297 (-)NCBICHM1_1
T2T-CHM13v2.0332,522,924 - 32,567,802 (-)NCBIT2T-CHM13v2.0
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Cytoplasmic dynein. Allan VJ, Biochem Soc Trans. 2011 Oct;39(5):1169-78. doi: 10.1042/BST0391169.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Recruitment of dynein to late endosomes and lysosomes through light intermediate chains. Tan SC, etal., Mol Biol Cell. 2011 Feb 15;22(4):467-77. doi: 10.1091/mbc.E10-02-0129. Epub 2010 Dec 17.
Additional References at PubMed
PMID:8125298   PMID:10893222   PMID:11243854   PMID:12477932   PMID:14702039   PMID:15302935   PMID:15345747   PMID:16260502   PMID:16344560   PMID:16565220   PMID:17081983   PMID:18029348  
PMID:19229290   PMID:19454010   PMID:19946888   PMID:20026645   PMID:20360068   PMID:20467437   PMID:20964624   PMID:21145461   PMID:21399614   PMID:21873635   PMID:22190034   PMID:22658674  
PMID:22863883   PMID:22939629   PMID:22956769   PMID:23383273   PMID:24797263   PMID:25231297   PMID:25272277   PMID:25416956   PMID:25422374   PMID:25921289   PMID:26344197   PMID:26485645  
PMID:26496610   PMID:26638075   PMID:26687479   PMID:26972000   PMID:27025967   PMID:27173435   PMID:27248496   PMID:27433848   PMID:27482052   PMID:27510948   PMID:27609421   PMID:28514442  
PMID:28718761   PMID:28846114   PMID:29117863   PMID:29128334   PMID:29467282   PMID:29509190   PMID:29515126   PMID:29564676   PMID:29568061   PMID:29845934   PMID:30097533   PMID:30217970  
PMID:30250299   PMID:30554943   PMID:30581152   PMID:30615611   PMID:30657258   PMID:30833792   PMID:30884312   PMID:30948266   PMID:31073040   PMID:31091453   PMID:31515488   PMID:31839598  
PMID:31871319   PMID:32129710   PMID:32203420   PMID:32296183   PMID:32319648   PMID:32513296   PMID:32994395   PMID:33111431   PMID:33239621   PMID:33374456   PMID:33462405   PMID:33567341  
PMID:33618749   PMID:33637726   PMID:33845483   PMID:33903120   PMID:33961781   PMID:34079125   PMID:34189442   PMID:34672954   PMID:34709360   PMID:35235311   PMID:35241646   PMID:35256949  
PMID:35271311   PMID:35314674   PMID:35384245   PMID:35439318   PMID:35446349   PMID:35509820   PMID:35563538   PMID:35831314   PMID:35944360   PMID:35987950   PMID:35989368   PMID:36215168  
PMID:36282215   PMID:36634849   PMID:36717926   PMID:36950384   PMID:37071682   PMID:37167062   PMID:37223481   PMID:37317656   PMID:37827155   PMID:38043095   PMID:38113892   PMID:38334954  
PMID:38697112   PMID:38943005   PMID:39358380   PMID:40437099  


Genomics

Comparative Map Data
DYNC1LI1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38332,525,974 - 32,570,858 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl332,525,974 - 32,570,858 (-)Ensemblhg38GRCh38
GRCh37332,567,466 - 32,612,350 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36332,542,470 - 32,587,346 (-)NCBIBuild 36Build 36hg18NCBI36
Celera332,504,552 - 32,549,458 (-)NCBICelera
Cytogenetic Map3p22.3NCBI
HuRef332,502,312 - 32,547,668 (-)NCBIHuRef
CHM1_1332,517,445 - 32,562,297 (-)NCBICHM1_1
T2T-CHM13v2.0332,522,924 - 32,567,802 (-)NCBIT2T-CHM13v2.0
Dync1li1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm399114,517,899 - 114,552,856 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl9114,517,858 - 114,553,370 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm389114,688,831 - 114,723,788 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl9114,688,790 - 114,724,302 (+)Ensemblmm10GRCm38
MGSCv379114,597,949 - 114,632,906 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv369114,537,529 - 114,572,486 (+)NCBIMGSCv36mm8
Celera9115,163,888 - 115,198,850 (+)NCBICelera
Cytogenetic Map9F3NCBI
cM Map964.96NCBI
Dync1li1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr88123,254,823 - 123,288,496 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl8123,254,859 - 123,289,167 (+)EnsemblGRCr8
mRatBN7.28114,376,649 - 114,410,297 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl8114,376,662 - 114,410,934 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx8119,993,673 - 120,027,564 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.08118,192,922 - 118,226,802 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.08116,035,754 - 116,069,647 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.08122,743,274 - 122,776,801 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl8122,743,189 - 122,776,806 (+)Ensemblrn6Rnor6.0
Rnor_5.08122,055,383 - 122,088,910 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.48119,103,884 - 119,137,411 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera8113,623,555 - 113,657,074 (+)NCBICelera
RGSC_v3.18119,123,620 - 119,157,148 (+)NCBI
Cytogenetic Map8q32NCBI
Dync1li1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495562046,556 - 82,595 (-)Ensembl
ChiLan1.0NW_00495562046,535 - 82,595 (-)NCBIChiLan1.0ChiLan1.0
DYNC1LI1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2232,503,341 - 32,549,695 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1332,508,120 - 32,554,514 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0332,450,693 - 32,495,400 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1332,758,407 - 32,804,117 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl332,758,407 - 32,804,117 (-)EnsemblpanPan2panpan1.1
DYNC1LI1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12312,235,539 - 12,283,851 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2312,235,104 - 12,277,031 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2312,210,519 - 12,258,652 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02312,526,271 - 12,574,477 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2312,525,836 - 12,568,653 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12312,328,096 - 12,376,225 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02312,437,857 - 12,517,703 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02312,474,796 - 12,522,987 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Dync1li1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118189,873,315 - 189,903,941 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647323,009,351 - 23,042,439 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647323,011,888 - 23,042,497 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DYNC1LI1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1318,506,194 - 18,558,007 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11318,507,710 - 18,558,057 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21320,309,319 - 20,330,876 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DYNC1LI1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11577,025,416 - 77,073,958 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1577,026,235 - 77,073,859 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604150,380,599 - 50,431,820 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dync1li1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462478810,593,940 - 10,625,052 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462478810,593,647 - 10,624,755 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in DYNC1LI1
32 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 3p22.3-22.2(chr3:32322382-36775606)x1 copy number loss See cases [RCV000051509] Chr3:32322382..36775606 [GRCh38]
Chr3:32363874..36817097 [GRCh37]
Chr3:32338878..36792101 [NCBI36]
Chr3:3p22.3-22.2		 pathogenic
GRCh38/hg38 3p26.3-22.2(chr3:52266-37148076)x3 copy number gain See cases [RCV000051097] Chr3:52266..37148076 [GRCh38]
Chr3:93949..37189567 [GRCh37]
Chr3:68949..37164571 [NCBI36]
Chr3:3p26.3-22.2		 pathogenic
GRCh38/hg38 3p25.3-22.2(chr3:11463328-38919543)x3 copy number gain See cases [RCV000051720] Chr3:11463328..38919543 [GRCh38]
Chr3:11504802..38961034 [GRCh37]
Chr3:11479802..38936038 [NCBI36]
Chr3:3p25.3-22.2		 pathogenic
NM_016141.3(DYNC1LI1):c.622C>T (p.Pro208Ser) single nucleotide variant Malignant melanoma [RCV000066009] Chr3:32541153 [GRCh38]
Chr3:32582645 [GRCh37]
Chr3:32557649 [NCBI36]
Chr3:3p22.3		 not provided
GRCh38/hg38 3p26.3-22.1(chr3:53308-41381521)x3 copy number gain See cases [RCV000141810] Chr3:53308..41381521 [GRCh38]
Chr3:94991..41423012 [GRCh37]
Chr3:69991..41398016 [NCBI36]
Chr3:3p26.3-22.1		 pathogenic
NM_016141.4(DYNC1LI1):c.1441C>G (p.Pro481Ala) single nucleotide variant not provided [RCV000190294] Chr3:32528467 [GRCh38]
Chr3:32569959 [GRCh37]
Chr3:3p22.3		 not provided
GRCh37/hg19 3p24.1-22.3(chr3:29689082-34233218)x1 copy number loss See cases [RCV000240426] Chr3:29689082..34233218 [GRCh37]
Chr3:3p24.1-22.3		 pathogenic
GRCh37/hg19 3p24.2-22.3(chr3:25045365-32691140)x1 copy number loss See cases [RCV000447472] Chr3:25045365..32691140 [GRCh37]
Chr3:3p24.2-22.3		 likely pathogenic
GRCh37/hg19 3p26.3-22.2(chr3:61891-36710181)x3 copy number gain See cases [RCV000448528] Chr3:61891..36710181 [GRCh37]
Chr3:3p26.3-22.2		 pathogenic
GRCh37/hg19 3p26.3-22.3(chr3:61891-33958201)x3 copy number gain See cases [RCV000510429] Chr3:61891..33958201 [GRCh37]
Chr3:3p26.3-22.3		 pathogenic
GRCh37/hg19 3p26.3-22.2(chr3:61891-37459464)x3 copy number gain See cases [RCV000511463] Chr3:61891..37459464 [GRCh37]
Chr3:3p26.3-22.2		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986)x3 copy number gain See cases [RCV000511055] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61892-197851986) copy number gain See cases [RCV000512358] Chr3:61892..197851986 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
NM_016141.4(DYNC1LI1):c.1235C>A (p.Ser412Tyr) single nucleotide variant not specified [RCV004304526] Chr3:32529611 [GRCh38]
Chr3:32571103 [GRCh37]
Chr3:3p22.3		 uncertain significance
GRCh37/hg19 3p24.3-21.31(chr3:16923595-45249923)x2,3 copy number gain not provided [RCV000682249] Chr3:16923595..45249923 [GRCh37]
Chr3:3p24.3-21.31		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:61495-197838262)x3 copy number gain not provided [RCV000742138] Chr3:61495..197838262 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p26.3-q29(chr3:60174-197948027)x3 copy number gain not provided [RCV000742133] Chr3:60174..197948027 [GRCh37]
Chr3:3p26.3-q29		 pathogenic
GRCh37/hg19 3p22.3(chr3:32498088-32606580)x3 copy number gain not provided [RCV000742346] Chr3:32498088..32606580 [GRCh37]
Chr3:3p22.3		 benign
GRCh37/hg19 3p26.3-22.2(chr3:61891-36710181) copy number gain not specified [RCV002053300] Chr3:61891..36710181 [GRCh37]
Chr3:3p26.3-22.2		 pathogenic
GRCh37/hg19 3p24.2-22.3(chr3:25045365-32691140) copy number loss not specified [RCV002053334] Chr3:25045365..32691140 [GRCh37]
Chr3:3p24.2-22.3		 likely pathogenic
GRCh37/hg19 3p23-22.3(chr3:31859973-33127072) copy number gain not specified [RCV002053337] Chr3:31859973..33127072 [GRCh37]
Chr3:3p23-22.3		 uncertain significance
NC_000003.11:g.(?_16710965)_(41275270_?)del deletion not provided [RCV001958625] Chr3:16710965..41275270 [GRCh37]
Chr3:3p24.3-22.1		 pathogenic
NM_016141.4(DYNC1LI1):c.1105G>A (p.Ala369Thr) single nucleotide variant not specified [RCV004309261] Chr3:32530496 [GRCh38]
Chr3:32571988 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.517G>T (p.Val173Phe) single nucleotide variant not specified [RCV004134230] Chr3:32544927 [GRCh38]
Chr3:32586419 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.505G>T (p.Val169Phe) single nucleotide variant not specified [RCV004236813] Chr3:32544939 [GRCh38]
Chr3:32586431 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.1553C>T (p.Thr518Met) single nucleotide variant not specified [RCV004138971] Chr3:32526818 [GRCh38]
Chr3:32568310 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.445G>A (p.Val149Ile) single nucleotide variant not specified [RCV004234008] Chr3:32544999 [GRCh38]
Chr3:32586491 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.1235C>G (p.Ser412Cys) single nucleotide variant not specified [RCV004239109] Chr3:32529611 [GRCh38]
Chr3:32571103 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.833A>T (p.Tyr278Phe) single nucleotide variant not specified [RCV004129063] Chr3:32534646 [GRCh38]
Chr3:32576138 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.607G>C (p.Asp203His) single nucleotide variant not specified [RCV004133797] Chr3:32541168 [GRCh38]
Chr3:32582660 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.17G>A (p.Arg6Gln) single nucleotide variant not specified [RCV004130104] Chr3:32570754 [GRCh38]
Chr3:32612246 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.614C>T (p.Pro205Leu) single nucleotide variant not specified [RCV004190587] Chr3:32541161 [GRCh38]
Chr3:32582653 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.583C>G (p.Gln195Glu) single nucleotide variant not specified [RCV004178879] Chr3:32541192 [GRCh38]
Chr3:32582684 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.1061C>T (p.Thr354Ile) single nucleotide variant not specified [RCV004096734] Chr3:32533005 [GRCh38]
Chr3:32574497 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.941T>C (p.Val314Ala) single nucleotide variant not specified [RCV004349110] Chr3:32534538 [GRCh38]
Chr3:32576030 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.1547C>G (p.Ser516Cys) single nucleotide variant not specified [RCV004361308] Chr3:32526824 [GRCh38]
Chr3:32568316 [GRCh37]
Chr3:3p22.3		 uncertain significance
GRCh37/hg19 3p22.3(chr3:32324460-33982773)x3 copy number gain not provided [RCV003484125] Chr3:32324460..33982773 [GRCh37]
Chr3:3p22.3		 uncertain significance
GRCh37/hg19 3p26.3-22.3(chr3:61891-33946644)x3 copy number gain not specified [RCV003986437] Chr3:61891..33946644 [GRCh37]
Chr3:3p26.3-22.3		 pathogenic
NM_016141.4(DYNC1LI1):c.686C>T (p.Ala229Val) single nucleotide variant not specified [RCV004379849] Chr3:32541089 [GRCh38]
Chr3:32582581 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.819G>C (p.Lys273Asn) single nucleotide variant not specified [RCV004379851] Chr3:32537024 [GRCh38]
Chr3:32578516 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.1487A>G (p.His496Arg) single nucleotide variant not specified [RCV004379847] Chr3:32526884 [GRCh38]
Chr3:32568376 [GRCh37]
Chr3:3p22.3		 uncertain significance
GRCh37/hg19 3p26.3-22.3(chr3:60000-34461438)x3 copy number gain not provided [RCV004577500] Chr3:60000..34461438 [GRCh37]
Chr3:3p26.3-22.3		 pathogenic
NM_016141.4(DYNC1LI1):c.694C>T (p.Leu232Phe) single nucleotide variant not specified [RCV004379850] Chr3:32541081 [GRCh38]
Chr3:32582573 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.952A>G (p.Lys318Glu) single nucleotide variant not specified [RCV004379852] Chr3:32534527 [GRCh38]
Chr3:32576019 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.1471C>T (p.Pro491Ser) single nucleotide variant not specified [RCV004617284] Chr3:32526900 [GRCh38]
Chr3:32568392 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.914A>C (p.Tyr305Ser) single nucleotide variant not specified [RCV004906803] Chr3:32534565 [GRCh38]
Chr3:32576057 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.748A>G (p.Ile250Val) single nucleotide variant not specified [RCV004906802] Chr3:32537095 [GRCh38]
Chr3:32578587 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.463C>T (p.Pro155Ser) single nucleotide variant not specified [RCV004906801] Chr3:32544981 [GRCh38]
Chr3:32586473 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.1472C>T (p.Pro491Leu) single nucleotide variant not specified [RCV004906799] Chr3:32526899 [GRCh38]
Chr3:32568391 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.94T>C (p.Ser32Pro) single nucleotide variant not specified [RCV004920472] Chr3:32570677 [GRCh38]
Chr3:32612169 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.40C>T (p.Pro14Ser) single nucleotide variant not specified [RCV004920473] Chr3:32570731 [GRCh38]
Chr3:32612223 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.613C>T (p.Pro205Ser) single nucleotide variant not specified [RCV005326933] Chr3:32541162 [GRCh38]
Chr3:32582654 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.1129A>T (p.Met377Leu) single nucleotide variant not specified [RCV005326934] Chr3:32530472 [GRCh38]
Chr3:32571964 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.175C>G (p.Arg59Gly) single nucleotide variant not specified [RCV005326935] Chr3:32570391 [GRCh38]
Chr3:32611883 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.831G>C (p.Gln277His) single nucleotide variant not specified [RCV005326936] Chr3:32537012 [GRCh38]
Chr3:32578504 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.499A>G (p.Ser167Gly) single nucleotide variant not specified [RCV005326929] Chr3:32544945 [GRCh38]
Chr3:32586437 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.599C>T (p.Pro200Leu) single nucleotide variant not specified [RCV005326930] Chr3:32541176 [GRCh38]
Chr3:32582668 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.769C>T (p.His257Tyr) single nucleotide variant not specified [RCV005326931] Chr3:32537074 [GRCh38]
Chr3:32578566 [GRCh37]
Chr3:3p22.3		 uncertain significance
NM_016141.4(DYNC1LI1):c.178T>A (p.Ser60Thr) single nucleotide variant not specified [RCV005326932] Chr3:32570388 [GRCh38]
Chr3:32611880 [GRCh37]
Chr3:3p22.3		 uncertain significance
miRNA Target Status (No longer updated)

Confirmed Target Of
miRNA GeneMature miRNAMethod NameResult TypeData TypeSupport TypePMID
MIR30Ahsa-miR-30a-5pMirtarbaseexternal_infoCLASHFunctional MTI (Weak)23622248

Predicted Target Of
Summary Value
Count of predictions:845
Count of miRNA genes:519
Interacting mature miRNAs:558
Transcripts:ENST00000273130, ENST00000413350, ENST00000424991, ENST00000432458, ENST00000472985, ENST00000474077, ENST00000475193, ENST00000481915
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
597082757GWAS1178831_Hgut microbiome measurement QTL GWAS1178831 (human)0.000002gut microbiome measurement33255745432557455Human
597222207GWAS1318281_Hapolipoprotein B measurement QTL GWAS1318281 (human)2e-18blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)33253701332537014Human
597095658GWAS1191732_Hlow density lipoprotein cholesterol measurement QTL GWAS1191732 (human)3e-08blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33252714032527141Human
2316061GLUCO194_HGlucose level QTL 194 (human)0.02Glucose level32338077449380774Human
597033832GWAS1129906_Hsensory perception of bitter taste QTL GWAS1129906 (human)0.000003sensory perception of bitter taste33252760432527605Human
597244294GWAS1340368_Hlow density lipoprotein cholesterol measurement QTL GWAS1340368 (human)5e-21blood LDL cholesterol amount (VT:0000181)blood low density lipoprotein cholesterol level (CMO:0000053)33253701332537014Human

Markers in Region
D3S2751E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37332,567,571 - 32,567,660UniSTSGRCh37
Build 36332,542,575 - 32,542,664RGDNCBI36
Celera332,504,660 - 32,504,749RGD
Cytogenetic Map3p22.3UniSTS
HuRef332,502,420 - 32,502,509UniSTS
D3S2949E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37332,571,082 - 32,571,819UniSTSGRCh37
Build 36332,546,086 - 32,546,823RGDNCBI36
Celera332,508,171 - 32,508,908RGD
Cytogenetic Map3p22.3UniSTS
HuRef332,505,929 - 32,506,666UniSTS
RH12436  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37332,567,517 - 32,567,666UniSTSGRCh37
Build 36332,542,521 - 32,542,670RGDNCBI36
Celera332,504,606 - 32,504,755RGD
Cytogenetic Map3p22.3UniSTS
HuRef332,502,366 - 32,502,515UniSTS
GeneMap99-GB4 RH Map3121.46UniSTS
NCBI RH Map3339.8UniSTS
SGC32413  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37332,567,510 - 32,567,639UniSTSGRCh37
Build 36332,542,514 - 32,542,643RGDNCBI36
Celera332,504,599 - 32,504,728RGD
Cytogenetic Map3p22.3UniSTS
HuRef332,502,359 - 32,502,488UniSTS
GeneMap99-GB4 RH Map3117.96UniSTS
Whitehead-RH Map3125.8UniSTS
DNCLI1_9670  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37332,567,458 - 32,568,368UniSTSGRCh37
Build 36332,542,462 - 32,543,372RGDNCBI36
Celera332,504,547 - 32,505,457RGD
HuRef332,502,307 - 32,503,217UniSTS
G20465  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37332,567,601 - 32,567,755UniSTSGRCh37
Build 36332,542,605 - 32,542,759RGDNCBI36
Celera332,504,690 - 32,504,844RGD
Cytogenetic Map3p22.3UniSTS
HuRef332,502,450 - 32,502,604UniSTS
A005S28  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh37332,567,601 - 32,567,755UniSTSGRCh37
Build 36332,542,605 - 32,542,759RGDNCBI36
Celera332,504,690 - 32,504,844RGD
Cytogenetic Map3p22.3UniSTS
HuRef332,502,450 - 32,502,604UniSTS
GeneMap99-GB4 RH Map3116.16UniSTS
NCBI RH Map3340.5UniSTS
DYNC1LI1  
Human AssemblyChrPosition (strand)SourceJBrowse
HuRef332,521,174 - 32,521,352UniSTS
D1S1423  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map10p12.1UniSTS
Cytogenetic Map10p12.1-p11.2UniSTS
Cytogenetic Map9q34.13UniSTS
Cytogenetic Map16q22.1UniSTS
Cytogenetic Map21q22.2UniSTS
Cytogenetic Map3p24.2UniSTS
Cytogenetic Map9q32UniSTS
Cytogenetic Map1q24UniSTS
Cytogenetic Map1q21UniSTS
Cytogenetic Map1p36.33UniSTS
Cytogenetic Map7p15.2UniSTS
Cytogenetic Map6p21UniSTS
Cytogenetic Map5q31UniSTS
Cytogenetic Map6p22.3-p21.32UniSTS
Cytogenetic Map6q22.33UniSTS
Cytogenetic Map3q29UniSTS
Cytogenetic Map17p11.2UniSTS
Cytogenetic Map19q13.3UniSTS
Cytogenetic Map1p36.13UniSTS
Cytogenetic Map5q33.3UniSTS
Cytogenetic Map22q11.22UniSTS
Cytogenetic Map11q13.2-q13.3UniSTS
Cytogenetic Map3q22-q24UniSTS
Cytogenetic Map8p21.3UniSTS
Cytogenetic Map7q32UniSTS
Cytogenetic Map1p32.3UniSTS
Cytogenetic Map19p13.12UniSTS
Cytogenetic Map4q21.1UniSTS
Cytogenetic Map12q13.13UniSTS
Cytogenetic Map7q11.2UniSTS
Cytogenetic Map1p22.1UniSTS
Cytogenetic Map2q32UniSTS
Cytogenetic MapXq13.1UniSTS
Cytogenetic Map9q12UniSTS
Cytogenetic Map3q26.2UniSTS
Cytogenetic Map22q11.21UniSTS
Cytogenetic Map10q23-q24UniSTS
Cytogenetic Map17q12UniSTS
Cytogenetic Map1p36.21UniSTS
Cytogenetic Map19p13.2UniSTS
Cytogenetic Map16q24.3UniSTS
Cytogenetic Map9q34.3UniSTS
Cytogenetic Map4p14UniSTS
Cytogenetic Map2p12UniSTS
Cytogenetic Map16p11.2UniSTS
Cytogenetic Map3q23UniSTS
Cytogenetic Map18q22.1UniSTS
Cytogenetic Map13q12UniSTS
Cytogenetic Map10p14-p13UniSTS
Cytogenetic Map12p13.31UniSTS
Cytogenetic Map14q24.3UniSTS
Cytogenetic Map22q13.2UniSTS
Cytogenetic Map19q13.11UniSTS
Cytogenetic Map11q23-q24UniSTS
Cytogenetic Map11q13.1UniSTS
Cytogenetic Map12q24.31UniSTS
Cytogenetic Map17q25UniSTS
Cytogenetic Map16q24.1UniSTS
Cytogenetic Map5q23.3UniSTS
Cytogenetic Map19q13.43UniSTS
Cytogenetic Map17q11.2UniSTS
Cytogenetic Map20q13.12UniSTS
Cytogenetic MapXp11.23UniSTS
Cytogenetic Map19q13.42UniSTS
Cytogenetic Map16q13UniSTS
Cytogenetic Map11q25UniSTS
Cytogenetic Map22cen-q12.3UniSTS
Cytogenetic Map10p13UniSTS
Cytogenetic Map2p11.2UniSTS
Cytogenetic Map15q11.2-q21.3UniSTS
Cytogenetic Map1p21.2UniSTS
Cytogenetic Map19p13UniSTS
Cytogenetic Map7q21.13UniSTS
Cytogenetic Map7q31.1UniSTS
Cytogenetic Map17p13.3UniSTS
Cytogenetic Map1p35.1UniSTS
Cytogenetic Map16q24UniSTS
Cytogenetic Map3q25UniSTS
Cytogenetic Map2q24.2UniSTS
Cytogenetic Map1p31.3UniSTS
Cytogenetic Map14q31.1UniSTS
Cytogenetic Map22q13.1UniSTS
Cytogenetic Map20q13.31UniSTS
Cytogenetic Map19p13.3UniSTS
Cytogenetic Map6p12.1UniSTS
Cytogenetic Map6q25.3UniSTS
Cytogenetic Map1q32.1UniSTS
Cytogenetic Map11q24.2UniSTS
Cytogenetic Map10p15.1UniSTS
Cytogenetic Map2p13.1UniSTS
Cytogenetic Map19q13.12UniSTS
Cytogenetic Map12p13.32UniSTS
Cytogenetic Map4q35.1UniSTS
Cytogenetic Map2p13.3UniSTS
Cytogenetic Map1p22UniSTS
Cytogenetic Map2q14UniSTS
Cytogenetic Map4q12UniSTS
Cytogenetic Map16p13.3UniSTS
Cytogenetic Map14q32.33UniSTS
Cytogenetic Map1p36.1UniSTS
Cytogenetic Map8p11.21UniSTS
Cytogenetic MapXq26.3UniSTS
Cytogenetic Map8q24.11UniSTS
Cytogenetic Map9q22.31UniSTS
Cytogenetic Map7q11.23UniSTS
Cytogenetic Map2p15UniSTS
Cytogenetic Map5q31.1UniSTS
Cytogenetic Map8q24.13UniSTS
Cytogenetic Map17p13UniSTS
Cytogenetic Map8p11.22UniSTS
Cytogenetic Map4q28UniSTS
Cytogenetic Map15q24.1UniSTS
Cytogenetic Map1q41-q42UniSTS
Cytogenetic Map10q22UniSTS
Cytogenetic Map5q35.3UniSTS
Cytogenetic Map20q11.21UniSTS
Cytogenetic Map8q24.3UniSTS
Cytogenetic Map12p13.1-p12.3UniSTS
Cytogenetic Map6p21.33UniSTS
Cytogenetic Map22q13.33UniSTS
Cytogenetic Map19p12UniSTS
Cytogenetic Map1p13.1UniSTS
Cytogenetic Map7q22.1UniSTS
Cytogenetic Map14q12UniSTS
Cytogenetic Map19q13.32UniSTS
Cytogenetic Map11q13.2UniSTS
Cytogenetic Map15q22.31UniSTS
Cytogenetic Map5q12.3UniSTS
Cytogenetic Map7q33UniSTS
Cytogenetic Map17q21.2UniSTS
Cytogenetic Map4q23UniSTS
Cytogenetic Map12q13.12UniSTS
Cytogenetic Map18p11.21UniSTS
Cytogenetic Map10q26.11UniSTS
Cytogenetic Map14q32.12UniSTS
Cytogenetic Map11q24.1UniSTS
Cytogenetic Map18q23UniSTS
Cytogenetic Map2q31.1UniSTS
Cytogenetic Map18p11.31UniSTS
Cytogenetic Map2q24.3UniSTS
Cytogenetic Map11q23UniSTS
Cytogenetic Map17q21.31UniSTS
Cytogenetic Map13q34UniSTS
Cytogenetic Map1p34.3UniSTS
Cytogenetic Map10p14UniSTS
Cytogenetic Map15q22.2UniSTS
Cytogenetic Map17q25.1UniSTS
Cytogenetic Map5q32UniSTS
Cytogenetic Map4p16.3UniSTS
Cytogenetic Map12q23.2UniSTS
Cytogenetic Map11q12.3UniSTS
Cytogenetic Map16q12.2UniSTS
Cytogenetic Map9q22.2UniSTS
Cytogenetic Map1q21.3UniSTS
Cytogenetic Map1p35.3UniSTS
Cytogenetic Map19q13.2UniSTS
Cytogenetic Map11p15.5UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map18p11.31-p11.21UniSTS
Cytogenetic Map3p25.3UniSTS
Cytogenetic Map3q13UniSTS
Cytogenetic Map21q22.3UniSTS
Cytogenetic Map1q43UniSTS
Cytogenetic Map19p13.11UniSTS
Cytogenetic Map19q13.41UniSTS
Cytogenetic Map7p21.2UniSTS
Cytogenetic Map12q21.1UniSTS
Cytogenetic Map15q15.1UniSTS
Cytogenetic Map15q13.1UniSTS
Cytogenetic Map1q42.1UniSTS
Cytogenetic Map5q31.2UniSTS
Cytogenetic Map1q21.2UniSTS
Cytogenetic Map17p13.1UniSTS
Cytogenetic Map1p34-p33UniSTS
Cytogenetic Map3q22.1UniSTS
Cytogenetic Map7p14UniSTS
Cytogenetic Map15q21UniSTS
Cytogenetic Map12q24.2UniSTS
Cytogenetic Map20q13UniSTS
Cytogenetic Map19q13.3-q13.4UniSTS
Cytogenetic Map17q21.32UniSTS
Cytogenetic Map15q11.2UniSTS
Cytogenetic Map8p23-p22UniSTS
Cytogenetic Map1p12UniSTS
Cytogenetic Map3q13.33UniSTS
Cytogenetic Map10p12.33UniSTS
Cytogenetic Map5q13.2UniSTS
Cytogenetic Map3q26UniSTS
Cytogenetic Map9p21.2UniSTS
Cytogenetic Map2p16.1UniSTS
Cytogenetic Map5q21.3UniSTS
Cytogenetic Map1p36.22UniSTS
Cytogenetic Map1p34.2UniSTS
Cytogenetic Map3q26.31UniSTS
Cytogenetic MapXp22.33UniSTS
Cytogenetic MapYp11.3UniSTS
Cytogenetic Map17q24.1UniSTS
Cytogenetic Map9q21.11UniSTS
Cytogenetic Map6q22.31UniSTS
Cytogenetic Map9q21.13UniSTS
Cytogenetic Map10q11.22UniSTS
Cytogenetic Map22q13.31UniSTS
Cytogenetic Map17p12UniSTS
Cytogenetic Map17q21.33UniSTS
Cytogenetic Map5p13.3UniSTS
Cytogenetic Map10q21.3UniSTS
Cytogenetic Map10q22.1UniSTS
Cytogenetic Map1p34UniSTS
Cytogenetic MapXp22UniSTS
Cytogenetic Map20p12.3-p11.21UniSTS
Cytogenetic Map2q37.1UniSTS
Cytogenetic Map6p25UniSTS
Cytogenetic MapXq27.2UniSTS
Cytogenetic Map4q31.1UniSTS
Cytogenetic Map4q31UniSTS
Cytogenetic Map22q13.1-q13.2UniSTS
Cytogenetic MapXq28UniSTS
Cytogenetic Map1p36.11UniSTS
Cytogenetic Map12q13.3UniSTS
Cytogenetic Map3q26.33UniSTS
Cytogenetic Map19q13.4UniSTS
Cytogenetic Map14q32UniSTS
Cytogenetic Map10q24.3UniSTS
Cytogenetic Map16q21UniSTS
Cytogenetic Map2p13UniSTS
Cytogenetic Map19q13.1UniSTS
Cytogenetic Map7q21-q22UniSTS
Cytogenetic Map2q11.2UniSTS
Cytogenetic Map17q25.3UniSTS
Cytogenetic Map4q22.1UniSTS
Cytogenetic Map11q22.1UniSTS
Cytogenetic Map12q14.2UniSTS
Cytogenetic Map20p13UniSTS
Cytogenetic Map7q36.3UniSTS
Cytogenetic Map20q11.21-q11.23UniSTS
Cytogenetic Map2q33.2UniSTS
Cytogenetic Map12q22UniSTS
Cytogenetic Map20q13.13UniSTS
Cytogenetic Map21p11.1UniSTS
Cytogenetic Map1p35-p34.3UniSTS
Cytogenetic Map7p11.2UniSTS
Cytogenetic Map13q14UniSTS
Cytogenetic Map7q36.1UniSTS
Cytogenetic Map12q24.31-q24.32UniSTS
Cytogenetic Map17q21.1UniSTS
Cytogenetic Map3q12.3UniSTS
Cytogenetic Map12qUniSTS
Cytogenetic Map11q13.5UniSTS
Cytogenetic Map2p14UniSTS
Cytogenetic Map2q14.3UniSTS
Cytogenetic Map7q34UniSTS
Cytogenetic Map14q32.1UniSTS
Cytogenetic Map21q22.11UniSTS
Cytogenetic Map3p14.1UniSTS
Cytogenetic Map16q23.2UniSTS
Cytogenetic Map7q32.1UniSTS
Cytogenetic Map17q22UniSTS
Cytogenetic Map4q31.23UniSTS
Cytogenetic Map11p15.3UniSTS
Cytogenetic Map3q27.1UniSTS
Cytogenetic Map2p22.3UniSTS
Cytogenetic Map22q13UniSTS
Cytogenetic Map1q32UniSTS
Cytogenetic Map11q14UniSTS
Cytogenetic MapXq13.2UniSTS
Cytogenetic Map16p13.12UniSTS
Cytogenetic MapXq22.3UniSTS
Cytogenetic Map9p12UniSTS
Cytogenetic Map4p16.1UniSTS
Cytogenetic Map11q23.1UniSTS
Cytogenetic Map3q27.3UniSTS
Cytogenetic Map16q23.1UniSTS
Cytogenetic Map15q15.2UniSTS
Cytogenetic Map2p21UniSTS
Cytogenetic Map13q33.3UniSTS
Cytogenetic Map15q22-q24UniSTS
Cytogenetic Map14q32.11UniSTS
Cytogenetic Map7p14.3UniSTS
Cytogenetic Map14q21.2UniSTS
Cytogenetic Map15q25.2UniSTS
Cytogenetic Map15q23UniSTS
Cytogenetic Map2p23.3UniSTS
Cytogenetic Map4p15.31UniSTS
Cytogenetic Map1q22UniSTS
Cytogenetic Map20q13.1UniSTS
Cytogenetic Map15q21.3UniSTS
Cytogenetic Map10q23.33UniSTS
Cytogenetic Map4q26UniSTS
Cytogenetic MapXq24UniSTS
Cytogenetic Map10q23.1UniSTS
Cytogenetic Map6p21.1UniSTS
Cytogenetic Map15q22.1-q22.31UniSTS
Cytogenetic Map1q31-q41UniSTS
Cytogenetic Map6q23.3UniSTS
Cytogenetic Map7q21.2UniSTS
Cytogenetic Map14q23UniSTS
Cytogenetic Map12q11-q12UniSTS
Cytogenetic Map17q23.3UniSTS
Cytogenetic Map4q24UniSTS
Cytogenetic Map1p32UniSTS
Cytogenetic Map3p21.1-p14.2UniSTS
Cytogenetic Map12q22-q23.1UniSTS
Cytogenetic Map6p22.1UniSTS
Cytogenetic Map6q24.2UniSTS
Cytogenetic Map9p13.3UniSTS
Cytogenetic Map6p24.1UniSTS
Cytogenetic Map19q13UniSTS
Cytogenetic Map20q11.22-q11.23UniSTS
Cytogenetic Map3p22.3UniSTS
Cytogenetic Map12q12UniSTS
Cytogenetic MapXq13-q21UniSTS
Cytogenetic Map9q34.11UniSTS
Cytogenetic Map16p13.13UniSTS
Cytogenetic Map10pter-q25.3UniSTS
Cytogenetic Map9p24.1UniSTS
Cytogenetic Map12p13.2UniSTS
Cytogenetic Map12q24UniSTS
Cytogenetic Map3q28-q29UniSTS
Cytogenetic Map10q26UniSTS
Cytogenetic Map6p22.2UniSTS
Cytogenetic Map2q13UniSTS
Cytogenetic Map12q24.2-q24.31UniSTS
Cytogenetic Map22q12.2UniSTS
Cytogenetic Map1q32.2-q41UniSTS
Cytogenetic Map11q22-q23UniSTS
Cytogenetic Map12p13.3UniSTS
Cytogenetic Map1p34.1UniSTS
Cytogenetic Map22q11UniSTS
Cytogenetic Map2q21.1UniSTS
Cytogenetic Map16p13.11UniSTS
Cytogenetic Map1q25.1UniSTS
Cytogenetic Map1p36.3UniSTS
Cytogenetic Map9p21UniSTS
Cytogenetic Map6p21.3UniSTS
Cytogenetic Map1q41UniSTS
Cytogenetic Map11q13.1-q13.3UniSTS
Cytogenetic Map16p13UniSTS
Cytogenetic Map15q26UniSTS
Cytogenetic Map18q21UniSTS
Cytogenetic Map4p15.1-p14UniSTS
Cytogenetic Map8q11.2UniSTS
Cytogenetic Map16q22UniSTS
Cytogenetic Map15q11-q13UniSTS
Cytogenetic Map7p12.3UniSTS
Cytogenetic Map7p13UniSTS
Cytogenetic Map15q26.1UniSTS
Cytogenetic Map14q22.1UniSTS
Cytogenetic Map2q12.3UniSTS
Cytogenetic MapXp22.12UniSTS
Cytogenetic Map20q11.23UniSTS
Cytogenetic Map1q21.1UniSTS
Cytogenetic Map1p36.31UniSTS
Cytogenetic Map16q11.2UniSTS
Cytogenetic Map14q32.2UniSTS
Cytogenetic Map11p15.4UniSTS
Cytogenetic Map22q11.1UniSTS
Cytogenetic Map5q33.2UniSTS
Cytogenetic Map14q23.1UniSTS
Cytogenetic Map7q32.3UniSTS
Cytogenetic Map20q13.3UniSTS
Cytogenetic Map10q26.13UniSTS
Cytogenetic Map1p31.1UniSTS
Cytogenetic Map11q13.4UniSTS
Cytogenetic Map11q23.3UniSTS
Cytogenetic Map15q25.1UniSTS
Cytogenetic Map9p13UniSTS
Cytogenetic Map2p24.2UniSTS
Cytogenetic Map9q33.3UniSTS
Cytogenetic Map19q13.31UniSTS
Cytogenetic Map11q12.2UniSTS
Cytogenetic Map7p15.3UniSTS
Cytogenetic Map6p25.2UniSTS
Cytogenetic Map6q25.1UniSTS
Cytogenetic Map3p21.31UniSTS
Cytogenetic Map17q23.2UniSTS
Cytogenetic MapXq25UniSTS
Cytogenetic Map2p25.1UniSTS
Cytogenetic Map1q25.3UniSTS
Cytogenetic Map6p24-p22.3UniSTS
Cytogenetic Map6q21UniSTS
Cytogenetic Map16p12.2UniSTS
Cytogenetic Map3q21-q24UniSTS
Cytogenetic Map4q13UniSTS
Cytogenetic Map11p13UniSTS
Cytogenetic Map9q34UniSTS
Cytogenetic Map8q13.1UniSTS
Cytogenetic Map5q21.2UniSTS
Cytogenetic Map4q34.3UniSTS
Cytogenetic Map3p22.1UniSTS
Cytogenetic Map2q37.3UniSTS
Cytogenetic Map8p23.1UniSTS
Cytogenetic Map1p13.3UniSTS
Cytogenetic Map15q14UniSTS
Cytogenetic Map13q13.3UniSTS
Cytogenetic Map12q13.2UniSTS
Cytogenetic Map1q31UniSTS
Cytogenetic Map7q11.21UniSTS
Cytogenetic Map10q26.3UniSTS
Cytogenetic Map15q15UniSTS
Cytogenetic MapXp11.4UniSTS
Cytogenetic Map8q24.12UniSTS
Cytogenetic Map15q22UniSTS
Cytogenetic Map1q25.2UniSTS
Cytogenetic Map13q11-q12UniSTS
Cytogenetic Map10q24.2UniSTS
Cytogenetic Map15q21.1UniSTS
Cytogenetic Map15q13.2UniSTS
Cytogenetic Map6q25.2UniSTS
Cytogenetic Map14q11.2UniSTS
Cytogenetic Map2q33.1UniSTS
Cytogenetic Map6q14.1UniSTS
Cytogenetic Map3q23-q24UniSTS
Cytogenetic Map2p25.1-p24.1UniSTS
Cytogenetic Map12q14.3UniSTS
Cytogenetic Map6q16.1UniSTS
Cytogenetic Map5p13.1UniSTS
Cytogenetic Map5q13UniSTS
Cytogenetic Map20pter-p12UniSTS
Cytogenetic MapXp22.11UniSTS
Cytogenetic Map16p13.2UniSTS
Cytogenetic Map16q22.3UniSTS
Cytogenetic Map7q31.3UniSTS
Cytogenetic Map21q22.13UniSTS
Cytogenetic Map1p21UniSTS
Cytogenetic Map8p11UniSTS
Cytogenetic Map7p14.2UniSTS
Cytogenetic Map8p11.23UniSTS
Cytogenetic Map18p11.22UniSTS
Cytogenetic Map18q21.33UniSTS
Cytogenetic Map9p24.3UniSTS
Cytogenetic Map11q22.3UniSTS
Cytogenetic Map14q22.2UniSTS
Cytogenetic Map20p11.22-p11.1UniSTS
Cytogenetic Map6p21.31UniSTS
Cytogenetic Map14q22.3UniSTS
Cytogenetic Map12q15UniSTS
Cytogenetic Map7q31UniSTS
Cytogenetic Map2q12.2UniSTS
Cytogenetic Map8p12UniSTS
Cytogenetic Map7p22.1UniSTS
Cytogenetic Map6p12.3UniSTS
Cytogenetic Map11q12-q13UniSTS
Cytogenetic Map18q21.1UniSTS
Cytogenetic Map10p11.21UniSTS
Cytogenetic Map6p22-p21UniSTS
Cytogenetic Map17q21.1-q21.3UniSTS
Cytogenetic Map12q24.33UniSTS
Cytogenetic Map4p15.32UniSTS
Cytogenetic Map1q42.13UniSTS
Cytogenetic Map19q12UniSTS
Cytogenetic Map3p14.3UniSTS
Cytogenetic Map12p13.2-p12.3UniSTS
Cytogenetic Map9q22.32UniSTS
Cytogenetic Map1p36.3-p36.2UniSTS
Cytogenetic Map5q22.2UniSTS
Cytogenetic Map4p15.2UniSTS
Cytogenetic Map4p15.3UniSTS
Cytogenetic Map4q28.1UniSTS
Cytogenetic Map12q13.1-q13.2UniSTS
Cytogenetic Map19q13.33UniSTS
Cytogenetic Map1p31UniSTS
Cytogenetic Map17p13.2UniSTS
Cytogenetic Map15q15.3UniSTS
Cytogenetic Map13q14.11UniSTS
Cytogenetic Map9p22.3UniSTS
Cytogenetic Map8q22.2UniSTS
Cytogenetic Map8q21.11UniSTS
Cytogenetic Map22q12.1UniSTS
Cytogenetic Map3q13.2UniSTS
Cytogenetic Map2q35UniSTS
Cytogenetic Map2q33.3UniSTS
Cytogenetic Map8p22UniSTS
Cytogenetic Map10q22.2UniSTS
Cytogenetic Map20p12.1UniSTS
Cytogenetic Map6q13UniSTS
Cytogenetic Map6q22.32UniSTS
Cytogenetic Map5q34UniSTS
Cytogenetic Map5p15.2UniSTS
Cytogenetic Map5q11.2UniSTS
Cytogenetic Map2q36.1UniSTS
Cytogenetic Map18q11.2UniSTS
Cytogenetic Map18q12.2UniSTS
Cytogenetic Map14q21.3UniSTS
Cytogenetic Map13q33.1UniSTS
Cytogenetic Map12p11.21UniSTS
Cytogenetic Map12q23.1UniSTS
Cytogenetic Map16p12.1UniSTS
Cytogenetic Map2q33UniSTS
Cytogenetic Map5q12.1UniSTS
Cytogenetic Map12q24.13UniSTS
Cytogenetic Map13q14.2UniSTS
Cytogenetic Map7q36UniSTS
Cytogenetic Map10q22.3-q23.2UniSTS
Cytogenetic Map7p15UniSTS
Cytogenetic Map14q32.31UniSTS
Cytogenetic Map11q21UniSTS
Cytogenetic Map4q21.3UniSTS
Cytogenetic Map7p13-p12UniSTS
Cytogenetic Map8p21.2UniSTS
Cytogenetic Map4q22UniSTS
Cytogenetic Map11q13UniSTS
Cytogenetic Map3q12.1UniSTS
Cytogenetic Map7q21.1-q22UniSTS
Cytogenetic Map17q21UniSTS
Cytogenetic Map3q13.13-q13.2UniSTS
Cytogenetic Map3p21.3UniSTS
Cytogenetic Map13q32.2UniSTS
Cytogenetic Map3q26.32UniSTS
Cytogenetic Map15qUniSTS
Cytogenetic Map2p13.2UniSTS
Cytogenetic Map3p12.3UniSTS
Cytogenetic Map10q11.23UniSTS
Cytogenetic Map3q11.2UniSTS
Cytogenetic Map12q13.11UniSTS
Cytogenetic Map13q14.13UniSTS
Cytogenetic Map10q23UniSTS
Cytogenetic Map11p11.2UniSTS
Cytogenetic Map6q16.2UniSTS
Cytogenetic Map3q21.1UniSTS
Cytogenetic Map10q11.21UniSTS
Cytogenetic Map1p13.2UniSTS
Cytogenetic Map6p24.2UniSTS
Cytogenetic Map20q13.33UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NG_051046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_016141 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_047448246 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054346721 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC104306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AF078849 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK074348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK222573 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK222653 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK293253 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC131620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BU521223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BX649189 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471055 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA284201 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY036998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000273130   ⟹   ENSP00000273130
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl332,525,974 - 32,570,858 (-)Ensembl
Ensembl Acc Id: ENST00000413350   ⟹   ENSP00000390507
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl332,541,052 - 32,570,253 (-)Ensembl
Ensembl Acc Id: ENST00000424991   ⟹   ENSP00000409019
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl332,544,989 - 32,570,858 (-)Ensembl
Ensembl Acc Id: ENST00000432458   ⟹   ENSP00000407279
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl332,526,284 - 32,570,858 (-)Ensembl
Ensembl Acc Id: ENST00000472985
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl332,529,630 - 32,537,272 (-)Ensembl
Ensembl Acc Id: ENST00000474077
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl332,545,874 - 32,570,858 (-)Ensembl
Ensembl Acc Id: ENST00000475193
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl332,545,427 - 32,570,825 (-)Ensembl
Ensembl Acc Id: ENST00000481915
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl332,526,100 - 32,570,693 (-)Ensembl
RefSeq Acc Id: NM_001329135   ⟹   NP_001316064
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38332,525,974 - 32,570,858 (-)NCBI
T2T-CHM13v2.0332,522,924 - 32,567,802 (-)NCBI
Sequence:
RefSeq Acc Id: NM_016141   ⟹   NP_057225
RefSeq Status: REVIEWED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38332,525,974 - 32,570,858 (-)NCBI
GRCh37332,567,463 - 32,612,373 (-)NCBI
Build 36332,542,470 - 32,587,346 (-)NCBI Archive
Celera332,504,552 - 32,549,458 (-)RGD
HuRef332,502,312 - 32,547,668 (-)ENTREZGENE
CHM1_1332,517,445 - 32,562,297 (-)NCBI
T2T-CHM13v2.0332,522,924 - 32,567,802 (-)NCBI
Sequence:
RefSeq Acc Id: XM_047448246   ⟹   XP_047304202
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38332,525,974 - 32,557,835 (-)NCBI
RefSeq Acc Id: XM_054346721   ⟹   XP_054202696
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.0332,522,924 - 32,554,779 (-)NCBI
RefSeq Acc Id: NP_057225   ⟸   NM_016141
- Peptide Label: isoform 1
- UniProtKB: Q53HC8 (UniProtKB/Swiss-Prot),   A2RRG7 (UniProtKB/Swiss-Prot),   Q53HK7 (UniProtKB/Swiss-Prot),   Q9Y6G9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316064   ⟸   NM_001329135
- Peptide Label: isoform 2
- UniProtKB: E9PHI6 (UniProtKB/TrEMBL),   B4DDM4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000409019   ⟸   ENST00000424991
Ensembl Acc Id: ENSP00000390507   ⟸   ENST00000413350
Ensembl Acc Id: ENSP00000273130   ⟸   ENST00000273130
Ensembl Acc Id: ENSP00000407279   ⟸   ENST00000432458
RefSeq Acc Id: XP_047304202   ⟸   XM_047448246
- Peptide Label: isoform X1
- UniProtKB: B3KM42 (UniProtKB/TrEMBL),   B4DDM4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_054202696   ⟸   XM_054346721
- Peptide Label: isoform X1
- UniProtKB: B3KM42 (UniProtKB/TrEMBL),   B4DDM4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q9Y6G9-F1-model_v2 AlphaFold Q9Y6G9 1-523 view protein structure

Promoters
RGD ID:6863898
Promoter ID:EPDNEW_H5114
Type:initiation region
Name:DYNC1LI1_1
Description:dynein cytoplasmic 1 light intermediate chain 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh38332,570,812 - 32,570,872EPDNEW
RGD ID:6800865
Promoter ID:HG_KWN:44243
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000253250,   OTTHUMT00000342169,   OTTHUMT00000342170,   OTTHUMT00000342172,   OTTHUMT00000342173,   OTTHUMT00000342174,   OTTHUMT00000342175
Position:
Human AssemblyChrPosition (strand)Source
Build 36332,586,821 - 32,587,592 (-)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:18745 AgrOrtholog
COSMIC DYNC1LI1 COSMIC
Ensembl Genes ENSG00000144635 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000273130 ENTREZGENE
  ENST00000273130.9 UniProtKB/Swiss-Prot
  ENST00000432458 ENTREZGENE
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
GTEx ENSG00000144635 GTEx
HGNC ID HGNC:18745 ENTREZGENE
Human Proteome Map DYNC1LI1 Human Proteome Map
InterPro Dynein1_light_intermed_chain UniProtKB/Swiss-Prot
  Dynein_light_int_chain UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
KEGG Report hsa:51143 UniProtKB/Swiss-Prot
NCBI Gene 51143 ENTREZGENE
OMIM 615890 OMIM
PANTHER CYTOPLASMIC DYNEIN 1 LIGHT INTERMEDIATE CHAIN 1 UniProtKB/Swiss-Prot
  PTHR12688 UniProtKB/Swiss-Prot
Pfam DLIC UniProtKB/Swiss-Prot
PharmGKB PA38670 PharmGKB
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A2RRG7 ENTREZGENE
  B3KM42 ENTREZGENE, UniProtKB/TrEMBL
  B4DDM4 ENTREZGENE, UniProtKB/TrEMBL
  C9JGM7_HUMAN UniProtKB/TrEMBL
  C9JLW1_HUMAN UniProtKB/TrEMBL
  DC1L1_HUMAN UniProtKB/Swiss-Prot
  E9PHI6 ENTREZGENE, UniProtKB/TrEMBL
  Q53HC8 ENTREZGENE
  Q53HK7 ENTREZGENE
  Q9Y6G9 ENTREZGENE
UniProt Secondary A2RRG7 UniProtKB/Swiss-Prot
  Q53HC8 UniProtKB/Swiss-Prot
  Q53HK7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-07 DYNC1LI1  dynein cytoplasmic 1 light intermediate chain 1    dynein, cytoplasmic 1, light intermediate chain 1  Symbol and/or name change 5135510 APPROVED