FAM163A (family with sequence similarity 163 member A) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: FAM163A (family with sequence similarity 163 member A) Homo sapiens
Analyze
Symbol: FAM163A
Name: family with sequence similarity 163 member A
RGD ID: 1605572
HGNC Page HGNC:28274
Description: Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: C1orf76; cebelin; family with sequence similarity 163, member A; MGC16664; NDSP; neuroblastoma derived secretory protein; neuroblastoma-derived secretory protein; RP11-12M5.2
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381179,727,776 - 179,816,198 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1179,743,291 - 179,816,198 (+)EnsemblGRCh38hg38GRCh38
GRCh371179,696,911 - 179,785,333 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361177,978,921 - 178,051,956 (+)NCBINCBI36Build 36hg18NCBI36
Celera1152,819,916 - 152,892,948 (+)NCBICelera
Cytogenetic Map1q25.2NCBI
HuRef1150,944,055 - 151,017,319 (+)NCBIHuRef
CHM1_11181,136,103 - 181,209,142 (+)NCBICHM1_1
T2T-CHM13v2.01179,083,538 - 179,171,949 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:15489334   PMID:16344560   PMID:16710414   PMID:17208556   PMID:19671756   PMID:20379614   PMID:28514442   PMID:30294689   PMID:32296183   PMID:32814053   PMID:33961781  
PMID:37524447  


Genomics

Comparative Map Data
FAM163A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381179,727,776 - 179,816,198 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1179,743,291 - 179,816,198 (+)EnsemblGRCh38hg38GRCh38
GRCh371179,696,911 - 179,785,333 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361177,978,921 - 178,051,956 (+)NCBINCBI36Build 36hg18NCBI36
Celera1152,819,916 - 152,892,948 (+)NCBICelera
Cytogenetic Map1q25.2NCBI
HuRef1150,944,055 - 151,017,319 (+)NCBIHuRef
CHM1_11181,136,103 - 181,209,142 (+)NCBICHM1_1
T2T-CHM13v2.01179,083,538 - 179,171,949 (+)NCBIT2T-CHM13v2.0
Fam163a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391155,951,702 - 156,033,027 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1155,951,712 - 156,032,596 (-)EnsemblGRCm39 Ensembl
GRCm381156,075,956 - 156,205,453 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1156,075,966 - 156,205,026 (-)EnsemblGRCm38mm10GRCm38
MGSCv371157,923,096 - 157,935,018 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361157,838,184 - 157,850,104 (-)NCBIMGSCv36mm8
Celera1158,513,987 - 158,596,643 (-)NCBICelera
Cytogenetic Map1G3NCBI
cM Map167.71NCBI
Fam163a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81370,813,129 - 70,891,410 (-)NCBIGRCr8
mRatBN7.21368,262,867 - 68,341,323 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1368,262,872 - 68,341,049 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1370,842,747 - 70,920,193 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01372,163,146 - 72,240,552 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01369,424,631 - 69,502,033 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01373,741,674 - 73,820,114 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1373,741,679 - 73,819,896 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01378,666,728 - 78,744,878 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41371,109,777 - 71,189,150 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1368,125,494 - 68,203,432 (-)NCBICelera
Cytogenetic Map13q22NCBI
Fam163a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540619,028,513 - 19,080,892 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495540619,019,569 - 19,079,995 (+)NCBIChiLan1.0ChiLan1.0
LOC100994085
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2169,951,252 - 69,962,606 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1169,609,523 - 69,696,141 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01155,223,640 - 155,297,354 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11158,904,436 - 158,977,221 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1158,974,145 - 158,977,214 (+)Ensemblpanpan1.1panPan2
FAM163A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1720,148,593 - 20,224,752 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl720,148,588 - 20,153,443 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha719,670,988 - 19,749,312 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0719,881,915 - 19,960,475 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl719,881,915 - 19,960,506 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1719,791,104 - 19,869,421 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0719,896,903 - 19,975,364 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0720,032,908 - 20,111,272 (-)NCBIUU_Cfam_GSD_1.0
Fam163a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934491,458,452 - 91,519,952 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364819,304,594 - 9,312,661 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049364819,307,340 - 9,367,572 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM163A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl9121,380,415 - 121,461,054 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.19121,378,101 - 121,460,641 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.29133,241,108 - 133,250,130 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM163A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12549,557,621 - 49,638,984 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2549,557,548 - 49,558,635 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605550,949,953 - 51,020,837 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam163a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624771118,268 - 128,501 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247711,090 - 128,402 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in FAM163A
20 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 1q25.1-31.1(chr1:175035040-186042595)x1 copy number loss See cases [RCV000051221] Chr1:175035040..186042595 [GRCh38]
Chr1:175004176..186011727 [GRCh37]
Chr1:173270799..184278350 [NCBI36]
Chr1:1q25.1-31.1		 pathogenic
GRCh38/hg38 1q23.3-25.2(chr1:164922655-180061589)x3 copy number gain See cases [RCV000051856] Chr1:164922655..180061589 [GRCh38]
Chr1:164891892..180030724 [GRCh37]
Chr1:163158516..178297347 [NCBI36]
Chr1:1q23.3-25.2		 pathogenic
GRCh38/hg38 1q25.2-32.1(chr1:179032905-199724897)x1 copy number loss See cases [RCV000053948] Chr1:179032905..199724897 [GRCh38]
Chr1:179002040..199694025 [GRCh37]
Chr1:177268663..197960648 [NCBI36]
Chr1:1q25.2-32.1		 pathogenic
NM_173509.2(FAM163A):c.-136+15777C>T single nucleotide variant Lung cancer [RCV000090053] Chr1:179759200 [GRCh38]
Chr1:179728335 [GRCh37]
Chr1:1q25.2		 uncertain significance
GRCh38/hg38 1q25.2-31.3(chr1:176595962-196301688)x1 copy number loss See cases [RCV000134144] Chr1:176595962..196301688 [GRCh38]
Chr1:176565098..196270818 [GRCh37]
Chr1:174831721..194537441 [NCBI36]
Chr1:1q25.2-31.3		 pathogenic
GRCh38/hg38 1q24.3-31.1(chr1:171039975-186875957)x3 copy number gain See cases [RCV000134876] Chr1:171039975..186875957 [GRCh38]
Chr1:171009116..186845089 [GRCh37]
Chr1:169275740..185111712 [NCBI36]
Chr1:1q24.3-31.1		 pathogenic
GRCh38/hg38 1q25.2(chr1:179721233-179745909)x3 copy number gain See cases [RCV000140076] Chr1:179721233..179745909 [GRCh38]
Chr1:179690368..179715044 [GRCh37]
Chr1:177956991..177981667 [NCBI36]
Chr1:1q25.2		 likely benign
GRCh38/hg38 1q24.3-31.2(chr1:170929720-191065409)x1 copy number loss See cases [RCV000142369] Chr1:170929720..191065409 [GRCh38]
Chr1:170898861..191034539 [GRCh37]
Chr1:169165485..189301162 [NCBI36]
Chr1:1q24.3-31.2		 pathogenic
GRCh38/hg38 1q24.2-31.1(chr1:170036068-187555148)x1 copy number loss See cases [RCV000143688] Chr1:170036068..187555148 [GRCh38]
Chr1:170005209..187524280 [GRCh37]
Chr1:168271833..185790903 [NCBI36]
Chr1:1q24.2-31.1		 pathogenic
GRCh38/hg38 1q21.2-25.2(chr1:149854269-180267197)x3 copy number gain See cases [RCV000143515] Chr1:149854269..180267197 [GRCh38]
Chr1:149825831..180236332 [GRCh37]
Chr1:148092455..178502955 [NCBI36]
Chr1:1q21.2-25.2		 pathogenic
GRCh37/hg19 1q24.3-25.3(chr1:172742952-181814496)x1 copy number loss See cases [RCV000239775] Chr1:172742952..181814496 [GRCh37]
Chr1:1q24.3-25.3		 pathogenic
GRCh37/hg19 1q24.2-25.3(chr1:169423492-180367623) copy number gain not provided [RCV000767621] Chr1:169423492..180367623 [GRCh37]
Chr1:1q24.2-25.3		 pathogenic
GRCh37/hg19 1q23.3-25.3(chr1:161676893-184071723)x1 copy number loss See cases [RCV000447098] Chr1:161676893..184071723 [GRCh37]
Chr1:1q23.3-25.3		 pathogenic
GRCh37/hg19 1q24.2-25.3(chr1:169873155-181823980)x1 copy number loss See cases [RCV000447593] Chr1:169873155..181823980 [GRCh37]
Chr1:1q24.2-25.3		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179413479-201764737)x1 copy number loss See cases [RCV000445748] Chr1:179413479..201764737 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.2-25.3(chr1:179564752-183850820)x1 copy number loss See cases [RCV000448646] Chr1:179564752..183850820 [GRCh37]
Chr1:1q25.2-25.3		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179073386-200192265)x1 copy number loss See cases [RCV000448809] Chr1:179073386..200192265 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.2-25.3(chr1:178806664-181082264) copy number loss Abnormal esophagus morphology [RCV000416849] Chr1:178806664..181082264 [GRCh37]
Chr1:1q25.2-25.3		 likely benign
GRCh37/hg19 1q24.3-31.3(chr1:171990029-195086758)x1 copy number loss See cases [RCV000448686] Chr1:171990029..195086758 [GRCh37]
Chr1:1q24.3-31.3		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179011314-199022759)x1 copy number loss See cases [RCV000512128] Chr1:179011314..199022759 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684)x3 copy number gain See cases [RCV000510383] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:849467-249224684) copy number gain See cases [RCV000510926] Chr1:849467..249224684 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
NM_173509.3(FAM163A):c.461G>A (p.Arg154His) single nucleotide variant not specified [RCV004301679] Chr1:179814146 [GRCh38]
Chr1:179783281 [GRCh37]
Chr1:1q25.2		 uncertain significance
GRCh37/hg19 1q25.1-25.3(chr1:173138799-185129406)x3 copy number gain See cases [RCV000512520] Chr1:173138799..185129406 [GRCh37]
Chr1:1q25.1-25.3		 likely pathogenic
GRCh37/hg19 1p36.33-q44(chr1:47851-249228449)x3 copy number gain not provided [RCV000736295] Chr1:47851..249228449 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1p36.33-q44(chr1:82154-249218992)x3 copy number gain not provided [RCV000736305] Chr1:82154..249218992 [GRCh37]
Chr1:1p36.33-q44		 pathogenic
GRCh37/hg19 1q25.1-31.1(chr1:173131908-187406532)x1 copy number loss not provided [RCV000736735] Chr1:173131908..187406532 [GRCh37]
Chr1:1q25.1-31.1		 pathogenic
NC_000001.10:g.172652343_183538289del10885947 deletion 1q24q25 microdeletion syndrome [RCV000785662] Chr1:172652343..183538289 [GRCh37]
Chr1:1q24.3-25.3		 pathogenic
t(1;5)(q25;q12) translocation Endometriosis [RCV000999464] Chr1:179785309..179785316 [GRCh37]
Chr5:66878645..66878654 [GRCh37]
Chr1:1q25.2
Chr5:5q13.1		 uncertain significance
GRCh37/hg19 1q25.2-32.1(chr1:177551193-199599056)x1 copy number loss not provided [RCV001005157] Chr1:177551193..199599056 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.1-25.3(chr1:173162501-182702252)x3 copy number gain not provided [RCV001258487] Chr1:173162501..182702252 [GRCh37]
Chr1:1q25.1-25.3		 pathogenic
NC_000001.10:g.(?_130980840)_(248900000_?)dup duplication Gastrointestinal stromal tumor [RCV001300221]|Parathyroid carcinoma [RCV001341077] Chr1:130980840..248900000 [GRCh37]
Chr1:1q12-44		 uncertain significance
GRCh37/hg19 1q24.3-31.3(chr1:171990029-195086758) copy number loss not specified [RCV002053736] Chr1:171990029..195086758 [GRCh37]
Chr1:1q24.3-31.3		 pathogenic
GRCh37/hg19 1q25.2-32.1(chr1:179413479-201764737) copy number loss not specified [RCV002053780] Chr1:179413479..201764737 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q25.2-31.1(chr1:178522021-190322133)x1 copy number loss not provided [RCV001836604] Chr1:178522021..190322133 [GRCh37]
Chr1:1q25.2-31.1		 pathogenic
GRCh37/hg19 1q25.2(chr1:179440911-179751622) copy number gain not specified [RCV002053791] Chr1:179440911..179751622 [GRCh37]
Chr1:1q25.2		 uncertain significance
GRCh37/hg19 1q25.2-32.1(chr1:179073386-200192265) copy number loss not specified [RCV002053769] Chr1:179073386..200192265 [GRCh37]
Chr1:1q25.2-32.1		 pathogenic
GRCh37/hg19 1q24.2-25.3(chr1:169873155-181823980) copy number loss not specified [RCV002053713] Chr1:169873155..181823980 [GRCh37]
Chr1:1q24.2-25.3		 pathogenic
NC_000001.10:g.(?_179520308)_(183559464_?)dup duplication Granulomatous disease, chronic, autosomal recessive, cytochrome b-positive, type 2 [RCV002014062] Chr1:179520308..183559464 [GRCh37]
Chr1:1q25.2-25.3		 uncertain significance
GRCh37/hg19 1q25.2-31.2(chr1:179727182-192260142)x1 copy number loss not provided [RCV002473949] Chr1:179727182..192260142 [GRCh37]
Chr1:1q25.2-31.2		 pathogenic
NM_173509.3(FAM163A):c.292T>C (p.Cys98Arg) single nucleotide variant not specified [RCV004134811] Chr1:179813977 [GRCh38]
Chr1:179783112 [GRCh37]
Chr1:1q25.2		 uncertain significance
NM_173509.3(FAM163A):c.113G>T (p.Ser38Ile) single nucleotide variant not specified [RCV004151345] Chr1:179813798 [GRCh38]
Chr1:179782933 [GRCh37]
Chr1:1q25.2		 uncertain significance
NM_173509.3(FAM163A):c.174A>T (p.Arg58Ser) single nucleotide variant not specified [RCV004167237] Chr1:179813859 [GRCh38]
Chr1:179782994 [GRCh37]
Chr1:1q25.2		 uncertain significance
NM_173509.3(FAM163A):c.437C>A (p.Pro146Gln) single nucleotide variant not specified [RCV004073668] Chr1:179814122 [GRCh38]
Chr1:179783257 [GRCh37]
Chr1:1q25.2		 uncertain significance
NM_173509.3(FAM163A):c.115G>A (p.Gly39Arg) single nucleotide variant not specified [RCV004280344] Chr1:179813800 [GRCh38]
Chr1:179782935 [GRCh37]
Chr1:1q25.2		 likely benign
NM_173509.3(FAM163A):c.154G>C (p.Asp52His) single nucleotide variant not specified [RCV004310678] Chr1:179813839 [GRCh38]
Chr1:179782974 [GRCh37]
Chr1:1q25.2		 uncertain significance
NM_173509.3(FAM163A):c.428A>G (p.Gln143Arg) single nucleotide variant not specified [RCV004251655] Chr1:179814113 [GRCh38]
Chr1:179783248 [GRCh37]
Chr1:1q25.2		 uncertain significance
NM_173509.3(FAM163A):c.401C>A (p.Pro134His) single nucleotide variant not specified [RCV004336852] Chr1:179814086 [GRCh38]
Chr1:179783221 [GRCh37]
Chr1:1q25.2		 uncertain significance
GRCh37/hg19 1q25.1-25.3(chr1:173162501-182702252)x3 copy number gain not specified [RCV003986506] Chr1:173162501..182702252 [GRCh37]
Chr1:1q25.1-25.3		 pathogenic
GRCh37/hg19 1q24.2-31.1(chr1:167994071-187711459)x1 copy number loss not specified [RCV003987250] Chr1:167994071..187711459 [GRCh37]
Chr1:1q24.2-31.1		 pathogenic
NM_173509.3(FAM163A):c.467C>A (p.Ala156Asp) single nucleotide variant not specified [RCV004378816] Chr1:179814152 [GRCh38]
Chr1:179783287 [GRCh37]
Chr1:1q25.2		 uncertain significance
NM_173509.3(FAM163A):c.182C>T (p.Thr61Ile) single nucleotide variant not specified [RCV004378814] Chr1:179813867 [GRCh38]
Chr1:179783002 [GRCh37]
Chr1:1q25.2		 uncertain significance
NM_173509.3(FAM163A):c.346G>A (p.Gly116Arg) single nucleotide variant not specified [RCV004378815] Chr1:179814031 [GRCh38]
Chr1:179783166 [GRCh37]
Chr1:1q25.2		 uncertain significance
NM_173509.3(FAM163A):c.124G>A (p.Val42Ile) single nucleotide variant not specified [RCV004378813] Chr1:179813809 [GRCh38]
Chr1:179782944 [GRCh37]
Chr1:1q25.2		 uncertain significance
NM_173509.3(FAM163A):c.498C>A (p.Asp166Glu) single nucleotide variant not specified [RCV004378817] Chr1:179814183 [GRCh38]
Chr1:179783318 [GRCh37]
Chr1:1q25.2		 uncertain significance
NC_000001.10:g.(?_179520308)_(183559464_?)del deletion not provided [RCV004579068] Chr1:179520308..183559464 [GRCh37]
Chr1:1q25.2-25.3		 pathogenic
NM_173509.3(FAM163A):c.292T>G (p.Cys98Gly) single nucleotide variant not specified [RCV004625331] Chr1:179813977 [GRCh38]
Chr1:179783112 [GRCh37]
Chr1:1q25.2		 uncertain significance
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1873
Count of miRNA genes:717
Interacting mature miRNAs:817
Transcripts:ENST00000341785, ENST00000423879, ENST00000451471
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
407118548GWAS767524_Hsmoking status measurement QTL GWAS767524 (human)3e-13smoking status measurement1179814032179814033Human
406898084GWAS547060_Hsmoking initiation QTL GWAS547060 (human)7e-33smoking initiation1179814032179814033Human
406990586GWAS639562_Hcigarettes per day measurement QTL GWAS639562 (human)3e-09cigarettes per day measurement1179753916179753917Human
407043608GWAS692584_Hmonocyte percentage of leukocytes QTL GWAS692584 (human)4e-10monocyte percentage of leukocytesblood monocyte count to total leukocyte count ratio (CMO:0000374)1179793310179793311Human
407118671GWAS767647_Hsmoking status measurement QTL GWAS767647 (human)2e-10smoking status measurement1179814032179814033Human
407264637GWAS913613_HAlzheimer disease, language impairment QTL GWAS913613 (human)0.000002Alzheimer disease, language impairment1179780639179780640Human
407323339GWAS972315_Hsmoking initiation QTL GWAS972315 (human)2e-31smoking initiation1179814032179814033Human
406907901GWAS556877_Haxial length measurement QTL GWAS556877 (human)2e-08axial length measurement1179754062179754063Human
407083549GWAS732525_Hsmoking initiation QTL GWAS732525 (human)0.0000001smoking initiation1179814032179814033Human

Markers in Region
RH98456  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371179,711,670 - 179,711,789UniSTSGRCh37
Build 361177,978,293 - 177,978,412RGDNCBI36
Celera1152,819,288 - 152,819,407RGD
Cytogenetic Map1q25.2UniSTS
HuRef1150,943,427 - 150,943,546UniSTS
GeneMap99-GB4 RH Map1628.61UniSTS
AL033719  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371179,726,403 - 179,726,551UniSTSGRCh37
Build 361177,993,026 - 177,993,174RGDNCBI36
Celera1152,834,022 - 152,834,170RGD
Cytogenetic Map1q25.2UniSTS
HuRef1150,958,159 - 150,958,307UniSTS
RH103528  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371179,785,169 - 179,785,301UniSTSGRCh37
Build 361178,051,792 - 178,051,924RGDNCBI36
Celera1152,892,784 - 152,892,916RGD
Cytogenetic Map1q25.2UniSTS
HuRef1151,017,155 - 151,017,287UniSTS
GeneMap99-GB4 RH Map1627.38UniSTS
SHGC-156054  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371179,762,769 - 179,763,087UniSTSGRCh37
Build 361178,029,392 - 178,029,710RGDNCBI36
Celera1152,870,388 - 152,870,706RGD
Cytogenetic Map1q25.2UniSTS
HuRef1150,994,530 - 150,994,848UniSTS
TNG Radiation Hybrid Map122837.0UniSTS
D1Bda47  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371179,728,008 - 179,728,716UniSTSGRCh37
Celera1152,835,627 - 152,836,335UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
911 2726 1861 1898 4855 2033 2184 3 501 964 399 1319 5961 4918 16 3855 757 2255 1499 107

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001329712 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329713 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329714 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329715 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329717 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329718 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001329719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393415 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393416 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393417 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393418 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393419 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393420 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393421 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393422 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001393423 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_173509 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138086 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138087 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138088 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NR_138089 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000391 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017000392 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AB299025 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK292432 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK302665 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK310711 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK313887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AL359853 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY902195 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC009382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471067 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA402650 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA416655 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB061956 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB066264 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB089377 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB091482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB092551 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB139576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DB151643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  HY036705 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000341785   ⟹   ENSP00000354891
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1179,743,291 - 179,816,198 (+)Ensembl
Ensembl Acc Id: ENST00000423879
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1179,730,217 - 179,742,697 (+)Ensembl
Ensembl Acc Id: ENST00000451471
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1179,742,009 - 179,742,697 (+)Ensembl
Ensembl Acc Id: ENST00000669730
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1179,730,117 - 179,742,713 (+)Ensembl
Ensembl Acc Id: ENST00000837365
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1179,730,184 - 179,805,822 (+)Ensembl
Ensembl Acc Id: ENST00000837366
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1179,730,188 - 179,788,666 (+)Ensembl
Ensembl Acc Id: ENST00000837367
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1179,730,177 - 179,770,873 (+)Ensembl
Ensembl Acc Id: ENST00000837368
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1179,730,175 - 179,769,467 (+)Ensembl
Ensembl Acc Id: ENST00000837369
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1179,727,419 - 179,742,703 (+)Ensembl
Ensembl Acc Id: ENST00000837370
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1179,730,177 - 179,742,697 (+)Ensembl
Ensembl Acc Id: ENST00000837371
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1179,730,196 - 179,742,697 (+)Ensembl
RefSeq Acc Id: NM_001329712   ⟹   NP_001316641
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001329713   ⟹   NP_001316642
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,727,776 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,083,538 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001329714   ⟹   NP_001316643
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,727,776 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,083,538 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001329715   ⟹   NP_001316644
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,730,188 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,085,950 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001329716   ⟹   NP_001316645
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,730,188 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,085,950 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001329717   ⟹   NP_001316646
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001329718   ⟹   NP_001316647
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001329719   ⟹   NP_001316648
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393415   ⟹   NP_001380344
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393416   ⟹   NP_001380345
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393417   ⟹   NP_001380346
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393418   ⟹   NP_001380347
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393419   ⟹   NP_001380348
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393420   ⟹   NP_001380349
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393421   ⟹   NP_001380350
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393422   ⟹   NP_001380351
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001393423   ⟹   NP_001380352
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NM_173509   ⟹   NP_775780
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,816,198 (+)NCBI
GRCh371179,696,912 - 179,785,333 (+)NCBI
Build 361177,978,921 - 178,051,956 (+)NCBI Archive
Celera1152,819,916 - 152,892,948 (+)RGD
HuRef1150,944,055 - 151,017,319 (+)ENTREZGENE
CHM1_11181,136,103 - 181,209,142 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,171,949 (+)NCBI
Sequence:
RefSeq Acc Id: NR_138087
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,727,776 - 179,809,933 (+)NCBI
T2T-CHM13v2.01179,083,538 - 179,165,688 (+)NCBI
Sequence:
RefSeq Acc Id: NR_138088
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,727,776 - 179,809,933 (+)NCBI
T2T-CHM13v2.01179,083,538 - 179,165,688 (+)NCBI
Sequence:
RefSeq Acc Id: NR_138089
RefSeq Status: VALIDATED
Type: NON-CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,809,933 (+)NCBI
T2T-CHM13v2.01179,099,053 - 179,165,688 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001316641 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316642 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316643 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316644 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316645 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316646 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316647 (Get FASTA)   NCBI Sequence Viewer  
  NP_001316648 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380344 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380345 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380346 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380347 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380348 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380349 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380350 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380351 (Get FASTA)   NCBI Sequence Viewer  
  NP_001380352 (Get FASTA)   NCBI Sequence Viewer  
  NP_775780 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH09382 (Get FASTA)   NCBI Sequence Viewer  
  AAX07133 (Get FASTA)   NCBI Sequence Viewer  
  BAF85121 (Get FASTA)   NCBI Sequence Viewer  
  BAF96730 (Get FASTA)   NCBI Sequence Viewer  
  BAG36612 (Get FASTA)   NCBI Sequence Viewer  
  BAG63900 (Get FASTA)   NCBI Sequence Viewer  
  EAW91055 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000354891
  ENSP00000354891.4
GenBank Protein Q96GL9 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_775780   ⟸   NM_173509
- UniProtKB: A8K8R7 (UniProtKB/Swiss-Prot),   Q96GL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316643   ⟸   NM_001329714
- UniProtKB: A8K8R7 (UniProtKB/Swiss-Prot),   Q96GL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316642   ⟸   NM_001329713
- UniProtKB: A8K8R7 (UniProtKB/Swiss-Prot),   Q96GL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316644   ⟸   NM_001329715
- UniProtKB: A8K8R7 (UniProtKB/Swiss-Prot),   Q96GL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316645   ⟸   NM_001329716
- UniProtKB: A8K8R7 (UniProtKB/Swiss-Prot),   Q96GL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316648   ⟸   NM_001329719
- UniProtKB: A8K8R7 (UniProtKB/Swiss-Prot),   Q96GL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316646   ⟸   NM_001329717
- UniProtKB: A8K8R7 (UniProtKB/Swiss-Prot),   Q96GL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316641   ⟸   NM_001329712
- UniProtKB: A8K8R7 (UniProtKB/Swiss-Prot),   Q96GL9 (UniProtKB/Swiss-Prot)
- Sequence:
RefSeq Acc Id: NP_001316647   ⟸   NM_001329718
- UniProtKB: A8K8R7 (UniProtKB/Swiss-Prot),   Q96GL9 (UniProtKB/Swiss-Prot)
- Sequence:
Ensembl Acc Id: ENSP00000354891   ⟸   ENST00000341785
RefSeq Acc Id: NP_001380347   ⟸   NM_001393418
- UniProtKB: Q96GL9 (UniProtKB/Swiss-Prot),   A8K8R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380345   ⟸   NM_001393416
- UniProtKB: Q96GL9 (UniProtKB/Swiss-Prot),   A8K8R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380352   ⟸   NM_001393423
- UniProtKB: Q96GL9 (UniProtKB/Swiss-Prot),   A8K8R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380351   ⟸   NM_001393422
- UniProtKB: Q96GL9 (UniProtKB/Swiss-Prot),   A8K8R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380348   ⟸   NM_001393419
- UniProtKB: Q96GL9 (UniProtKB/Swiss-Prot),   A8K8R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380350   ⟸   NM_001393421
- UniProtKB: Q96GL9 (UniProtKB/Swiss-Prot),   A8K8R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380344   ⟸   NM_001393415
- UniProtKB: Q96GL9 (UniProtKB/Swiss-Prot),   A8K8R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380346   ⟸   NM_001393417
- UniProtKB: Q96GL9 (UniProtKB/Swiss-Prot),   A8K8R7 (UniProtKB/Swiss-Prot)
RefSeq Acc Id: NP_001380349   ⟸   NM_001393420
- UniProtKB: Q96GL9 (UniProtKB/Swiss-Prot),   A8K8R7 (UniProtKB/Swiss-Prot)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96GL9-F1-model_v2 AlphaFold Q96GL9 1-167 view protein structure

Promoters
RGD ID:6858262
Promoter ID:EPDNEW_H2296
Type:initiation region
Name:FAM163A_3
Description:family with sequence similarity 163 member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2297  EPDNEW_H2298  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,730,188 - 179,730,248EPDNEW
RGD ID:6858264
Promoter ID:EPDNEW_H2297
Type:initiation region
Name:FAM163A_2
Description:family with sequence similarity 163 member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2296  EPDNEW_H2298  
Experiment Methods:Single-end sequencing.; Paired-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,742,881 - 179,742,941EPDNEW
RGD ID:6858266
Promoter ID:EPDNEW_H2298
Type:initiation region
Name:FAM163A_1
Description:family with sequence similarity 163 member A
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H2296  EPDNEW_H2297  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381179,743,291 - 179,743,351EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:28274 AgrOrtholog
COSMIC FAM163A COSMIC
Ensembl Genes ENSG00000143340 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSG00000243062 Ensembl
Ensembl Transcript ENST00000341785 ENTREZGENE
  ENST00000341785.5 UniProtKB/Swiss-Prot
GTEx ENSG00000143340 GTEx
  ENSG00000243062 GTEx
HGNC ID HGNC:28274 ENTREZGENE
Human Proteome Map FAM163A Human Proteome Map
InterPro FAM163 UniProtKB/Swiss-Prot
  FAM163A UniProtKB/Swiss-Prot
KEGG Report hsa:148753 UniProtKB/Swiss-Prot
NCBI Gene 148753 ENTREZGENE
OMIM 611727 OMIM
PANTHER PROTEIN FAM163A UniProtKB/Swiss-Prot
  PTHR31914 UniProtKB/Swiss-Prot
Pfam FAM163 UniProtKB/Swiss-Prot
PharmGKB PA162386944 PharmGKB
UniProt A8K8R7 ENTREZGENE
  F163A_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A8K8R7 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-11-24 FAM163A  family with sequence similarity 163 member A    family with sequence similarity 163, member A  Symbol and/or name change 5135510 APPROVED