NELFB (negative elongation factor complex member B) - Rat Genome Database

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Gene: NELFB (negative elongation factor complex member B) Homo sapiens
Analyze
Symbol: NELFB
Name: negative elongation factor complex member B
RGD ID: 1603677
HGNC Page HGNC:24324
Description: Predicted to enable RNA binding activity. Involved in negative regulation of transcription elongation by RNA polymerase II. Located in cytoplasm and nucleoplasm. Part of NELF complex.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: COBRA1; cofactor of BRCA1; DKFZp586B0519; KIAA1182; negative elongation factor B; negative elongation factor protein B; NELF-B; RP13-122B23.3
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,255,327 - 137,273,542 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,255,327 - 137,273,542 (+)EnsemblGRCh38hg38GRCh38
GRCh379140,149,779 - 140,167,994 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,269,768 - 139,287,815 (+)NCBINCBI36Build 36hg18NCBI36
Celera9110,665,618 - 110,683,794 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,609,072 - 109,627,292 (+)NCBIHuRef
CHM1_19140,298,493 - 140,316,577 (+)NCBICHM1_1
T2T-CHM13v2.09149,492,996 - 149,511,192 (+)NCBIT2T-CHM13v2.0
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IDA)
NELF complex  (IBA,IDA,IPI)
nucleoplasm  (IDA,TAS)
nucleus  (IDA,IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
Phenotype Annotations     Click to see Annotation Detail View

Human Phenotype
Seizure  (IAGP)
References

References - curated
# Reference Title Reference Citation
1. Control of transcriptional elongation. Kwak H and Lis JT, Annu Rev Genet. 2013;47:483-508. doi: 10.1146/annurev-genet-110711-155440. Epub 2013 Sep 11.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10199401   PMID:10574461   PMID:11076863   PMID:11112772   PMID:11230166   PMID:11256614   PMID:11739404   PMID:11940650   PMID:12477932   PMID:12612062   PMID:12676794   PMID:14667819  
PMID:14702039   PMID:15185750   PMID:15302935   PMID:15342491   PMID:15489334   PMID:15489336   PMID:15530430   PMID:16344560   PMID:16381901   PMID:16452188   PMID:16838299   PMID:16964243  
PMID:17353931   PMID:17442680   PMID:17474147   PMID:17499042   PMID:17659869   PMID:17910036   PMID:18029348   PMID:18071589   PMID:18562274   PMID:19245807   PMID:20195357   PMID:20211142  
PMID:20305087   PMID:21153684   PMID:21873635   PMID:21900206   PMID:22863883   PMID:23518577   PMID:24034695   PMID:24097989   PMID:24158816   PMID:24255178   PMID:24636995   PMID:24981860  
PMID:25640309   PMID:25921289   PMID:26010750   PMID:26186194   PMID:26344197   PMID:26496610   PMID:27282391   PMID:28112367   PMID:28514442   PMID:28515276   PMID:28533407   PMID:29180619  
PMID:29229926   PMID:29509190   PMID:29568061   PMID:29656893   PMID:29676528   PMID:29955894   PMID:30036938   PMID:30196744   PMID:30554943   PMID:31048545   PMID:31280863   PMID:31536960  
PMID:32296183   PMID:32416067   PMID:32941674   PMID:33239621   PMID:33961781   PMID:34079125   PMID:34189442   PMID:34373451   PMID:34705606   PMID:35241646   PMID:35256949   PMID:35271311  
PMID:35439318   PMID:35509820   PMID:35831314   PMID:35844135   PMID:35944360   PMID:36089195   PMID:36215168   PMID:36543142   PMID:36931259   PMID:37117180   PMID:37536630   PMID:37591184  
PMID:37689310   PMID:37827155  


Genomics

Comparative Map Data
NELFB
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh389137,255,327 - 137,273,542 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl9137,255,327 - 137,273,542 (+)EnsemblGRCh38hg38GRCh38
GRCh379140,149,779 - 140,167,994 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 369139,269,768 - 139,287,815 (+)NCBINCBI36Build 36hg18NCBI36
Celera9110,665,618 - 110,683,794 (+)NCBICelera
Cytogenetic Map9q34.3NCBI
HuRef9109,609,072 - 109,627,292 (+)NCBIHuRef
CHM1_19140,298,493 - 140,316,577 (+)NCBICHM1_1
T2T-CHM13v2.09149,492,996 - 149,511,192 (+)NCBIT2T-CHM13v2.0
Nelfb
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39225,089,724 - 25,101,501 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl225,089,724 - 25,101,501 (-)EnsemblGRCm39 Ensembl
GRCm38225,199,712 - 25,211,489 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl225,199,712 - 25,211,489 (-)EnsemblGRCm38mm10GRCm38
MGSCv37225,055,232 - 25,067,009 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36225,021,726 - 25,033,390 (-)NCBIMGSCv36mm8
Celera224,927,483 - 24,939,264 (-)NCBICelera
Cytogenetic Map2A3NCBI
cM Map217.06NCBI
Nelfb
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8328,409,045 - 28,425,564 (-)NCBIGRCr8
mRatBN7.238,010,883 - 8,027,403 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl38,010,888 - 8,027,403 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx311,115,610 - 11,132,086 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0319,701,839 - 19,718,315 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0317,891,682 - 17,908,158 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.032,414,448 - 2,431,148 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl32,414,451 - 2,431,148 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.032,395,734 - 2,412,431 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.433,360,222 - 3,376,609 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
RGSC_v3.133,360,218 - 3,376,563 (-)NCBI
Celera32,837,727 - 2,854,117 (-)NCBICelera
Cytogenetic Map3p13NCBI
Nelfb
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049555135,248,190 - 5,262,044 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049555135,248,190 - 5,261,018 (+)NCBIChiLan1.0ChiLan1.0
NELFB
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2112,126,248 - 2,144,680 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan192,128,581 - 2,147,028 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v09108,314,535 - 108,333,050 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.19137,283,264 - 137,301,751 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl9137,278,964 - 137,301,751 (+)Ensemblpanpan1.1panPan2
NELFB
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1948,411,725 - 48,425,044 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl948,408,005 - 48,423,308 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha947,598,208 - 47,608,900 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0949,273,065 - 49,283,756 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl949,206,548 - 49,287,069 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1948,049,494 - 48,060,162 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0948,348,232 - 48,358,986 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0948,395,161 - 48,405,870 (-)NCBIUU_Cfam_GSD_1.0
Nelfb
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404947202,636,347 - 202,648,327 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936669726,658 - 738,848 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936669726,731 - 738,714 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NELFB
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa10.21314,117,252 - 314,125,940 (-)NCBISscrofa10.2Sscrofa10.2susScr3
NELFB
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.112914,384 - 933,921 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_0236660584,373,307 - 4,392,656 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nelfb
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624760692,735 - 705,328 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624760692,735 - 703,571 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in NELFB
37 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 9q34.3(chr9:136323974-138014606)x1 copy number loss See cases [RCV000050344] Chr9:136323974..138014606 [GRCh38]
Chr9:139218428..140909058 [GRCh37]
Chr9:138338249..140028879 [NCBI36]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000050348] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121112395-138075224)x3 copy number gain See cases [RCV000051009] Chr9:121112395..138075224 [GRCh38]
Chr9:123874673..140969676 [GRCh37]
Chr9:122914494..140089497 [NCBI36]
Chr9:9q33.2-34.3
pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:122792658-138124532)x3 copy number gain See cases [RCV000051040] Chr9:122792658..138124532 [GRCh38]
Chr9:125554937..141018984 [GRCh37]
Chr9:124594758..140138805 [NCBI36]
Chr9:9q33.2-34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:136323974-138124532)x1 copy number loss See cases [RCV000051116] Chr9:136323974..138124532 [GRCh38]
Chr9:139218428..141018984 [GRCh37]
Chr9:138338249..140138805 [NCBI36]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.2-34.3(chr9:134428674-138154922)x1 copy number loss See cases [RCV000052936] Chr9:134428674..138154922 [GRCh38]
Chr9:137320520..141049374 [GRCh37]
Chr9:136460341..140169195 [NCBI36]
Chr9:9q34.2-34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:135452016-137613738)x1 copy number loss See cases [RCV000052937] Chr9:135452016..137613738 [GRCh38]
Chr9:138343862..140508190 [GRCh37]
Chr9:137483683..139628011 [NCBI36]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:137092629-137375788)x1 copy number loss See cases [RCV000052887] Chr9:137092629..137375788 [GRCh38]
Chr9:139987081..140270240 [GRCh37]
Chr9:139106902..139390061 [NCBI36]
Chr9:9q34.3
uncertain significance
GRCh38/hg38 9q34.3(chr9:137215877-137830604)x1 copy number loss See cases [RCV000052951] Chr9:137215877..137830604 [GRCh38]
Chr9:140110329..140725056 [GRCh37]
Chr9:139230150..139844877 [NCBI36]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:136015976-138124532)x1 copy number loss Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052938]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000052938]|See cases [RCV000052938] Chr9:136015976..138124532 [GRCh38]
Chr9:138907822..141018984 [GRCh37]
Chr9:138047643..140138805 [NCBI36]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:136926575-138114463)x1 copy number loss See cases [RCV000052940] Chr9:136926575..138114463 [GRCh38]
Chr9:139821027..141008915 [GRCh37]
Chr9:138940848..140128736 [NCBI36]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:137215877-138138735)x1 copy number loss See cases [RCV000052941] Chr9:137215877..138138735 [GRCh38]
Chr9:140110329..141033187 [GRCh37]
Chr9:139230150..140153008 [NCBI36]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124532)x3 copy number gain See cases [RCV000053745] Chr9:193412..138124532 [GRCh38]
Chr9:204193..141018984 [GRCh37]
Chr9:194193..140138805 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138114463)x3 copy number gain See cases [RCV000053746] Chr9:193412..138114463 [GRCh38]
Chr9:214367..141008915 [GRCh37]
Chr9:204367..140128736 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053748]|See cases [RCV000053748] Chr9:193412..138179445 [GRCh38]
Chr9:266045..141073897 [GRCh37]
Chr9:256045..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9q34.2-34.3(chr9:134174698-138138735)x3 copy number gain See cases [RCV000053814] Chr9:134174698..138138735 [GRCh38]
Chr9:137091194..141033187 [GRCh37]
Chr9:136029641..140153008 [NCBI36]
Chr9:9q34.2-34.3
pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121586837-138179445)x3 copy number gain Developmental Delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053776]|Developmental delay and additional significant developmental and morphological phenotypes referred for genetic testing [RCV000053776]|See cases [RCV000053776] Chr9:121586837..138179445 [GRCh38]
Chr9:124349116..141073897 [GRCh37]
Chr9:123388937..140193718 [NCBI36]
Chr9:9q33.2-34.3
pathogenic
Single allele deletion Epilepsy [RCV001293379] Chr9:139764148..141066491 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:204193-138179445) copy number gain See cases [RCV000133791] Chr9:204193..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9q34.11-34.3(chr9:130513207-138124532)x3 copy number gain See cases [RCV000133778] Chr9:130513207..138124532 [GRCh38]
Chr9:133388594..141018984 [GRCh37]
Chr9:132378415..140138805 [NCBI36]
Chr9:9q34.11-34.3
pathogenic
GRCh38/hg38 9q34.11-34.3(chr9:129068560-138179445)x3 copy number gain See cases [RCV000134916] Chr9:129068560..138179445 [GRCh38]
Chr9:131830839..141073897 [GRCh37]
Chr9:130870660..140193718 [NCBI36]
Chr9:9q34.11-34.3
pathogenic
GRCh38/hg38 9q33.2-34.3(chr9:121073102-138179445)x3 copy number gain See cases [RCV000134920] Chr9:121073102..138179445 [GRCh38]
Chr9:123835380..141073897 [GRCh37]
Chr9:122875201..140193718 [NCBI36]
Chr9:9q33.2-34.3
pathogenic
GRCh38/hg38 9q34.13-34.3(chr9:132986903-138114463)x3 copy number gain See cases [RCV000136790] Chr9:132986903..138114463 [GRCh38]
Chr9:135862290..141008915 [GRCh37]
Chr9:134852111..140128736 [NCBI36]
Chr9:9q34.13-34.3
pathogenic
GRCh38/hg38 9q34.2-34.3(chr9:133504071-138159073)x3 copy number gain See cases [RCV000137825] Chr9:133504071..138159073 [GRCh38]
Chr9:136324358..141053525 [GRCh37]
Chr9:135314179..140173346 [NCBI36]
Chr9:9q34.2-34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138124524)x3 copy number gain See cases [RCV000138783] Chr9:193412..138124524 [GRCh38]
Chr9:204090..141018976 [GRCh37]
Chr9:194090..140138797 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9p11.2-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000139207] Chr9:193412..138159073 [GRCh38]
Chr9:68420641..141053525 [GRCh37]
Chr9:67910461..140173346 [NCBI36]
Chr9:9p11.2-q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138159073)x3 copy number gain See cases [RCV000138962] Chr9:193412..138159073 [GRCh38]
Chr9:204104..141053525 [GRCh37]
Chr9:194104..140173346 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic|conflicting data from submitters
GRCh38/hg38 9q34.2-34.3(chr9:133996227-138124524)x3 copy number gain See cases [RCV000139807] Chr9:133996227..138124524 [GRCh38]
Chr9:136861349..141018976 [GRCh37]
Chr9:135851170..140138797 [NCBI36]
Chr9:9q34.2-34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:203861-138125937)x3 copy number gain See cases [RCV000141876] Chr9:203861..138125937 [GRCh38]
Chr9:203861..141020389 [GRCh37]
Chr9:193861..140140210 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9q34.2-34.3(chr9:133918071-138159073)x3 copy number gain See cases [RCV000142955] Chr9:133918071..138159073 [GRCh38]
Chr9:136783193..141053525 [GRCh37]
Chr9:135773014..140173346 [NCBI36]
Chr9:9q34.2-34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:136877772-138124524)x1 copy number loss See cases [RCV000142978] Chr9:136877772..138124524 [GRCh38]
Chr9:139772224..141018976 [GRCh37]
Chr9:138892045..140138797 [NCBI36]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.13-34.3(chr9:132386553-138059695)x3 copy number gain See cases [RCV000142636] Chr9:132386553..138059695 [GRCh38]
Chr9:135261940..140954147 [GRCh37]
Chr9:134251761..140073968 [NCBI36]
Chr9:9q34.13-34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:137092629-137270028)x3 copy number gain See cases [RCV000142744] Chr9:137092629..137270028 [GRCh38]
Chr9:139987081..140164480 [GRCh37]
Chr9:139106902..139284301 [NCBI36]
Chr9:9q34.3
benign
GRCh38/hg38 9q34.3(chr9:135704780-138125937)x4 copy number gain See cases [RCV000143394] Chr9:135704780..138125937 [GRCh38]
Chr9:138596626..141020389 [GRCh37]
Chr9:137736447..140140210 [NCBI36]
Chr9:9q34.3
likely pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:203862-138125937)x3 copy number gain See cases [RCV000143476] Chr9:203862..138125937 [GRCh38]
Chr9:203862..141020389 [GRCh37]
Chr9:193862..140140210 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:136323974-138014606)x1 copy number loss See cases [RCV000148284] Chr9:136323974..138014606 [GRCh38]
Chr9:139218428..140909058 [GRCh37]
Chr9:138338249..140028879 [NCBI36]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9p24.3-q34.3(chr9:193412-138179445)x3 copy number gain See cases [RCV000148113] Chr9:193412..138179445 [GRCh38]
Chr9:204193..141073897 [GRCh37]
Chr9:194193..140193718 [NCBI36]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:163131-141122114)x3 copy number gain See cases [RCV000240081] Chr9:163131..141122114 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:140166981-140201415)x4 copy number gain not provided [RCV000753244] Chr9:140166981..140201415 [GRCh37]
Chr9:9q34.3
benign
GRCh37/hg19 9q34.3(chr9:140167730-140218283)x3 copy number gain not provided [RCV000753248] Chr9:140167730..140218283 [GRCh37]
Chr9:9q34.3
benign
GRCh37/hg19 9p24.3-q34.3(chr9:62525-141006407) copy number gain See cases [RCV000449375] Chr9:62525..141006407 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:138222049-141018925)x1 copy number loss See cases [RCV000446074] Chr9:138222049..141018925 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020389)x3 copy number gain not specified [RCV003986800] Chr9:203861..141020389 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q33.3-34.3(chr9:128652785-141044751)x3 copy number gain See cases [RCV000447080] Chr9:128652785..141044751 [GRCh37]
Chr9:9q33.3-34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:140043049-141020389)x1 copy number loss See cases [RCV000446191] Chr9:140043049..141020389 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh37/hg19 9q33.2-34.3(chr9:124642754-141146461)x3 copy number gain See cases [RCV000448784] Chr9:124642754..141146461 [GRCh37]
Chr9:9q33.2-34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:139282807-141020389)x1 copy number loss See cases [RCV000448743] Chr9:139282807..141020389 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203864-141020389)x3 copy number gain See cases [RCV000448978] Chr9:203864..141020389 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:138209358-141020389)x1 copy number loss See cases [RCV000510584] Chr9:138209358..141020389 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:138275621-141020389)x3 copy number gain See cases [RCV000511188] Chr9:138275621..141020389 [GRCh37]
Chr9:9q34.3
likely pathogenic
NM_015456.5(NELFB):c.917C>A (p.Pro306Gln) single nucleotide variant not specified [RCV004302815] Chr9:137263212 [GRCh38]
Chr9:140157664 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.746T>C (p.Val249Ala) single nucleotide variant not specified [RCV004318682] Chr9:137263041 [GRCh38]
Chr9:140157493 [GRCh37]
Chr9:9q34.3
uncertain significance
GRCh37/hg19 9q21.11-34.3(chr9:71069743-140999928) copy number gain Global developmental delay [RCV000626548] Chr9:71069743..140999928 [GRCh37]
Chr9:9q21.11-34.3
likely pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:203862-141020389) copy number gain See cases [RCV000512392] Chr9:203862..141020389 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q34.13-34.3(chr9:135377559-141213431)x1 copy number loss mTOR Inhibitor response [RCV000626442] Chr9:135377559..141213431 [GRCh37]
Chr9:9q34.13-34.3
drug response
GRCh37/hg19 9q34.13-34.3(chr9:135105971-141020389)x3 copy number gain not provided [RCV000683160] Chr9:135105971..141020389 [GRCh37]
Chr9:9q34.13-34.3
pathogenic
Single allele copy number loss Kleefstra syndrome 1 [RCV004813392] Chr9:138557721..141138302 [GRCh37] pathogenic
GRCh37/hg19 9q34.3(chr9:140094273-140218283)x3 copy number gain not provided [RCV000753242] Chr9:140094273..140218283 [GRCh37]
Chr9:9q34.3
benign
GRCh37/hg19 9q34.3(chr9:140166981-140218283)x3 copy number gain not provided [RCV000753245] Chr9:140166981..140218283 [GRCh37]
Chr9:9q34.3
benign
GRCh37/hg19 9q34.3(chr9:140094273-140167730)x3 copy number gain not provided [RCV000753240] Chr9:140094273..140167730 [GRCh37]
Chr9:9q34.3
benign
GRCh37/hg19 9q34.3(chr9:140094273-140218212)x3 copy number gain not provided [RCV000753241] Chr9:140094273..140218212 [GRCh37]
Chr9:9q34.3
benign
GRCh37/hg19 9q34.3(chr9:140094273-140332474)x3 copy number gain not provided [RCV000753243] Chr9:140094273..140332474 [GRCh37]
Chr9:9q34.3
benign
GRCh37/hg19 9q34.3(chr9:140167730-140201415)x4 copy number gain not provided [RCV000753247] Chr9:140167730..140201415 [GRCh37]
Chr9:9q34.3
benign
GRCh37/hg19 9q34.3(chr9:140166981-140332474)x3 copy number gain not provided [RCV000753246] Chr9:140166981..140332474 [GRCh37]
Chr9:9q34.3
benign
GRCh37/hg19 9q34.3(chr9:140167877-140201415)x4 copy number gain not provided [RCV000753249] Chr9:140167877..140201415 [GRCh37]
Chr9:9q34.3
benign
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141122247)x3 copy number gain not provided [RCV000748055] Chr9:10590..141122247 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:137816459-141114095)x1 copy number loss not provided [RCV000748787] Chr9:137816459..141114095 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141107672)x3 copy number gain not provided [RCV000748053] Chr9:10590..141107672 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:46587-141066491)x3 copy number gain not provided [RCV000748063] Chr9:46587..141066491 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:10590-141114095)x2 copy number gain not provided [RCV000748054] Chr9:10590..141114095 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
NC_000009.11:g.(?_138645763)_(140729425_?)del deletion Developmental and epileptic encephalopathy, 14 [RCV001362982]|Kleefstra syndrome 1 [RCV001031921] Chr9:138645763..140729425 [GRCh37]
Chr9:9q34.3
pathogenic|uncertain significance
GRCh37/hg19 9p24.3-q34.3(chr9:203861-141020388)x3 copy number gain not provided [RCV000845900] Chr9:203861..141020388 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:139766260-140186072)x3 copy number gain not provided [RCV000848688] Chr9:139766260..140186072 [GRCh37]
Chr9:9q34.3
uncertain significance
GRCh37/hg19 9q21.11-34.3(chr9:71416475-141020389)x3 copy number gain not provided [RCV000847808] Chr9:71416475..141020389 [GRCh37]
Chr9:9q21.11-34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:140064816-140759229)x3 copy number gain not provided [RCV000847406] Chr9:140064816..140759229 [GRCh37]
Chr9:9q34.3
uncertain significance
NC_000009.11:g.(?_139089171)_(141016451_?)del deletion Rafiq syndrome [RCV003122293]|not provided [RCV003105304] Chr9:139089171..141016451 [GRCh37]
Chr9:9q34.3
pathogenic|no classifications from unflagged records
Single allele copy number loss Kleefstra syndrome 1 [RCV004813380] Chr9:139674181..141018648 [GRCh37] pathogenic
Single allele copy number loss Kleefstra syndrome 1 [RCV004813382] Chr9:140033837..141111544 [GRCh37] pathogenic
Single allele copy number loss Kleefstra syndrome 1 [RCV004813384] Chr9:139694299..140792635 [GRCh37] pathogenic
Single allele copy number loss Kleefstra syndrome 1 [RCV004813390] Chr9:139937332..141111829 [GRCh37] pathogenic
Single allele copy number loss Kleefstra syndrome 1 [RCV004813388] Chr9:140141148..141153431 [GRCh37] pathogenic
Single allele copy number loss Kleefstra syndrome 1 [RCV004813391] Chr9:139559141..141093906 [GRCh37] pathogenic
NC_000009.12:g.(?_137139467)_(137834973_?)del deletion Kleefstra syndrome 1 [RCV001031572] Chr9:140033919..140729425 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:138225001-141015001) copy number loss Microcephaly [RCV001252947] Chr9:138225001..141015001 [GRCh37]
Chr9:9q34.3
pathogenic
NC_000009.11:g.(?_139018777)_(141018984_?)del deletion Kleefstra syndrome 1 [RCV001267844] Chr9:139018777..141018984 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:139776707-140234193)x3 copy number gain not provided [RCV001259536] Chr9:139776707..140234193 [GRCh37]
Chr9:9q34.3
uncertain significance
GRCh37/hg19 9q34.3(chr9:139284464-141018984) copy number loss Cryptorchidism [RCV001352666] Chr9:139284464..141018984 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh37/hg19 9p24.3-q34.3(chr9:353349-141020389) copy number gain not specified [RCV002053823] Chr9:353349..141020389 [GRCh37]
Chr9:9p24.3-q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:139282807-141020389) copy number loss not specified [RCV002052852] Chr9:139282807..141020389 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:140043049-141020389) copy number loss not specified [RCV002052854] Chr9:140043049..141020389 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:138740078-141020389) copy number loss not specified [RCV002052850] Chr9:138740078..141020389 [GRCh37]
Chr9:9q34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:139563039-140310033) copy number loss not specified [RCV002052853] Chr9:139563039..140310033 [GRCh37]
Chr9:9q34.3
uncertain significance
NC_000009.11:g.(?_139943109)_(140269288_?)dup duplication Intellectual disability, autosomal dominant 8 [RCV001996989] Chr9:139943109..140269288 [GRCh37]
Chr9:9q34.3
uncertain significance
NC_000009.11:g.(?_140040158)_(141016451_?)del deletion Intellectual disability, autosomal dominant 8 [RCV003109674]|Kleefstra syndrome 1 [RCV003116549] Chr9:140040158..141016451 [GRCh37]
Chr9:9q34.3
pathogenic|uncertain significance
NC_000009.11:g.(?_138392557)_(141016451_?)del deletion Adams-Oliver syndrome 5 [RCV003119767]|Developmental and epileptic encephalopathy, 14 [RCV003109684]|Familial aplasia of the vermis [RCV003119768] Chr9:138392557..141016451 [GRCh37]
Chr9:9q34.3
pathogenic|uncertain significance
NC_000009.11:g.(?_131087402)_(141016451_?)dup duplication Neonatal encephalomyopathy-cardiomyopathy-respiratory distress syndrome [RCV003119700] Chr9:131087402..141016451 [GRCh37]
Chr9:9q34.11-34.3
uncertain significance
NC_000009.11:g.(?_136218768)_(141016451_?)dup duplication Kleefstra syndrome 1 [RCV003122719] Chr9:136218768..141016451 [GRCh37]
Chr9:9q34.2-34.3
uncertain significance
NM_015456.5(NELFB):c.506C>T (p.Pro169Leu) single nucleotide variant not specified [RCV004115356] Chr9:137256424 [GRCh38]
Chr9:140150876 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1471C>T (p.Arg491Cys) single nucleotide variant not specified [RCV004124577] Chr9:137267328 [GRCh38]
Chr9:140161780 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1646A>C (p.His549Pro) single nucleotide variant not specified [RCV004133039] Chr9:137272521 [GRCh38]
Chr9:140166973 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1733C>T (p.Thr578Ile) single nucleotide variant not specified [RCV004089522] Chr9:137272608 [GRCh38]
Chr9:140167060 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1462G>A (p.Ala488Thr) single nucleotide variant not specified [RCV004237264] Chr9:137267319 [GRCh38]
Chr9:140161771 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1669A>G (p.Ile557Val) single nucleotide variant not specified [RCV004131827] Chr9:137272544 [GRCh38]
Chr9:140166996 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1153G>A (p.Asp385Asn) single nucleotide variant not specified [RCV004195506] Chr9:137266340 [GRCh38]
Chr9:140160792 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1809G>T (p.Lys603Asn) single nucleotide variant not specified [RCV004122270] Chr9:137272850 [GRCh38]
Chr9:140167302 [GRCh37]
Chr9:9q34.3
uncertain significance
GRCh38/hg38 9q34.3(chr9:134962336-137240181)x1 copy number loss See cases [RCV002640756] Chr9:134962336..137240181 [GRCh38]
Chr9:9q34.3
pathogenic
NM_015456.5(NELFB):c.1537C>T (p.Leu513Phe) single nucleotide variant not specified [RCV004074238] Chr9:137272128 [GRCh38]
Chr9:140166580 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1777G>A (p.Gly593Ser) single nucleotide variant not specified [RCV004125622] Chr9:137272818 [GRCh38]
Chr9:140167270 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1376T>G (p.Phe459Cys) single nucleotide variant not specified [RCV004122223] Chr9:137267080 [GRCh38]
Chr9:140161532 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.425A>C (p.Glu142Ala) single nucleotide variant not specified [RCV004190199] Chr9:137256343 [GRCh38]
Chr9:140150795 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.602A>C (p.Asn201Thr) single nucleotide variant not specified [RCV004097691] Chr9:137256915 [GRCh38]
Chr9:140151367 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.956G>C (p.Arg319Pro) single nucleotide variant not specified [RCV004133284] Chr9:137264273 [GRCh38]
Chr9:140158725 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1123G>A (p.Gly375Ser) single nucleotide variant not specified [RCV004216713] Chr9:137265959 [GRCh38]
Chr9:140160411 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.851C>T (p.Thr284Met) single nucleotide variant not specified [RCV004257181] Chr9:137263146 [GRCh38]
Chr9:140157598 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.298G>A (p.Asp100Asn) single nucleotide variant not specified [RCV004277728] Chr9:137255958 [GRCh38]
Chr9:140150410 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.833G>A (p.Arg278Gln) single nucleotide variant not specified [RCV004292035] Chr9:137263128 [GRCh38]
Chr9:140157580 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1268C>T (p.Pro423Leu) single nucleotide variant not specified [RCV004261559] Chr9:137266972 [GRCh38]
Chr9:140161424 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1805G>A (p.Arg602Gln) single nucleotide variant not specified [RCV004336067] Chr9:137272846 [GRCh38]
Chr9:140167298 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.631C>A (p.Pro211Thr) single nucleotide variant not specified [RCV004361732] Chr9:137256944 [GRCh38]
Chr9:140151396 [GRCh37]
Chr9:9q34.3
uncertain significance
GRCh37/hg19 9q34.2-34.3(chr9:136988996-141020389)x3 copy number gain not provided [RCV003484786] Chr9:136988996..141020389 [GRCh37]
Chr9:9q34.2-34.3
pathogenic
GRCh37/hg19 9q34.3(chr9:139685408-141050580)x3 copy number gain 9q34.3 microduplication-related neurodevelopmental disorder [RCV003761660] Chr9:139685408..141050580 [GRCh37]
Chr9:9q34.3
likely pathogenic
GRCh37/hg19 9q34.3(chr9:139942000-141074000)x3 copy number gain 9q34.3 microduplication-related neurodevelopmental disorder [RCV003761658] Chr9:139942000..141074000 [GRCh37]
Chr9:9q34.3
likely pathogenic
GRCh37/hg19 9q34.3(chr9:139972953-140954193)x3 copy number gain 9q34.3 microduplication-related neurodevelopmental disorder [RCV003761661] Chr9:139972953..140954193 [GRCh37]
Chr9:9q34.3
likely pathogenic
GRCh37/hg19 9q34.3(chr9:140014769-140930811)x3 copy number gain 9q34.3 microduplication-related neurodevelopmental disorder [RCV003761662] Chr9:140014769..140930811 [GRCh37]
Chr9:9q34.3
likely pathogenic
NM_015456.5(NELFB):c.1411G>A (p.Glu471Lys) single nucleotide variant not specified [RCV004483619] Chr9:137267268 [GRCh38]
Chr9:140161720 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1709C>T (p.Ala570Val) single nucleotide variant not specified [RCV004483653] Chr9:137272584 [GRCh38]
Chr9:140167036 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1796T>C (p.Leu599Pro) single nucleotide variant not specified [RCV004483665] Chr9:137272837 [GRCh38]
Chr9:140167289 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1817C>T (p.Pro606Leu) single nucleotide variant not specified [RCV004483680] Chr9:137272858 [GRCh38]
Chr9:140167310 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.257G>C (p.Gly86Ala) single nucleotide variant not specified [RCV004483614] Chr9:137255917 [GRCh38]
Chr9:140150369 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1307A>G (p.Asn436Ser) single nucleotide variant not specified [RCV004483616] Chr9:137267011 [GRCh38]
Chr9:140161463 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1690G>C (p.Ala564Pro) single nucleotide variant not specified [RCV004483643] Chr9:137272565 [GRCh38]
Chr9:140167017 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.521A>G (p.Lys174Arg) single nucleotide variant not specified [RCV004483694] Chr9:137256834 [GRCh38]
Chr9:140151286 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.181G>A (p.Gly61Ser) single nucleotide variant not specified [RCV004483700] Chr9:137255546 [GRCh38]
Chr9:140149998 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1016A>G (p.Lys339Arg) single nucleotide variant not specified [RCV004483730] Chr9:137264333 [GRCh38]
Chr9:140158785 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1171C>T (p.Arg391Trp) single nucleotide variant not specified [RCV004641498] Chr9:137266358 [GRCh38]
Chr9:140160810 [GRCh37]
Chr9:9q34.3
uncertain significance
NC_000009.11:g.(?_140127344)_(140164869_?)del deletion not provided [RCV004583146] Chr9:140127344..140164869 [GRCh37]
Chr9:9q34.3
pathogenic
NM_015456.5(NELFB):c.1653C>T (p.His551=) single nucleotide variant not specified [RCV004641499] Chr9:137272528 [GRCh38]
Chr9:140166980 [GRCh37]
Chr9:9q34.3
likely benign
NM_015456.5(NELFB):c.1745G>T (p.Gly582Val) single nucleotide variant not specified [RCV004641500] Chr9:137272786 [GRCh38]
Chr9:140167238 [GRCh37]
Chr9:9q34.3
uncertain significance
NM_015456.5(NELFB):c.1876G>A (p.Ala626Thr) single nucleotide variant not specified [RCV004654760] Chr9:137272917 [GRCh38]
Chr9:140167369 [GRCh37]
Chr9:9q34.3
uncertain significance
GRCh38/hg38 9q34.3(chr9:136869696-138172039) copy number loss Kleefstra syndrome 1 [RCV004720516] Chr9:136869696..138172039 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:135969078-138104469) copy number loss Kleefstra syndrome 1 [RCV004720472] Chr9:135969078..138104469 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:135182209-138129711) copy number loss Kleefstra syndrome 1 [RCV004720473] Chr9:135182209..138129711 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:135338745-138124196) copy number loss Kleefstra syndrome 1 [RCV004720539] Chr9:135338745..138124196 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.13-34.3(chr9:137552409-138052113) copy number loss Kleefstra syndrome 1 [RCV004720482] Chr9:137552409..138052113 [GRCh38]
Chr9:9q34.13-34.3
pathogenic
GRCh38/hg38 9q34.13-34.3(chr9:137552409-138059181) copy number loss Kleefstra syndrome 1 [RCV004720481] Chr9:137552409..138059181 [GRCh38]
Chr9:9q34.13-34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:137529711-138129711) copy number loss Kleefstra syndrome 1 [RCV004720486] Chr9:137529711..138129711 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.13-34.3(chr9:137552409-137879159) copy number loss Kleefstra syndrome 1 [RCV004720487] Chr9:137552409..137879159 [GRCh38]
Chr9:9q34.13-34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:137272928-137711050) copy number loss Kleefstra syndrome 1 [RCV004720490] Chr9:137272928..137711050 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:137106653-138394717) copy number loss Kleefstra syndrome 1 [RCV004720502] Chr9:137106653..138394717 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:136817307-138133487) copy number loss Kleefstra syndrome 1 [RCV004720504] Chr9:136817307..138133487 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:136032451-138125938) copy number loss Kleefstra syndrome 1 [RCV004720514] Chr9:136032451..138125938 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:137059436-137902321) copy number loss Kleefstra syndrome 1 [RCV004720509] Chr9:137059436..137902321 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:135791488-138262981) copy number loss Kleefstra syndrome 1 [RCV004720522] Chr9:135791488..138262981 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:137170000-138360000) copy number loss Kleefstra syndrome 1 [RCV004720531] Chr9:137170000..138360000 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:136993278-138200863) copy number loss Kleefstra syndrome 1 [RCV004720533] Chr9:136993278..138200863 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.13-34.3(chr9:137590213-138052188) copy number loss Kleefstra syndrome 1 [RCV004720477] Chr9:137590213..138052188 [GRCh38]
Chr9:9q34.13-34.3
pathogenic
GRCh38/hg38 9q34.13-34.3(chr9:137552082-137728529) copy number loss Kleefstra syndrome 1 [RCV004720485] Chr9:137552082..137728529 [GRCh38]
Chr9:9q34.13-34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:137569711-138129711) copy number loss Kleefstra syndrome 1 [RCV004720496] Chr9:137569711..138129711 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:136806104-138394717) copy number loss Kleefstra syndrome 1 [RCV004720497] Chr9:136806104..138394717 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:136684941-138124673) copy number loss Kleefstra syndrome 1 [RCV004720523] Chr9:136684941..138124673 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:137552082-138394717) copy number loss Kleefstra syndrome 1 [RCV004720495] Chr9:137552082..138394717 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.13-34.3(chr9:137590213-137817525) copy number loss Kleefstra syndrome 1 [RCV004720478] Chr9:137590213..137817525 [GRCh38]
Chr9:9q34.13-34.3
pathogenic
GRCh38/hg38 9q34.13-34.3(chr9:136926151-138059181) copy number loss Kleefstra syndrome 1 [RCV004720480] Chr9:136926151..138059181 [GRCh38]
Chr9:9q34.13-34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:135954288-138125938) copy number loss Kleefstra syndrome 1 [RCV004720483] Chr9:135954288..138125938 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:135204722-138394717) copy number loss Kleefstra syndrome 1 [RCV004720508] Chr9:135204722..138394717 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:135008333-138199729) copy number loss Kleefstra syndrome 1 [RCV004720511] Chr9:135008333..138199729 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.2-34.3(chr9:134288333-138155727) copy number loss Kleefstra syndrome 1 [RCV004720515] Chr9:134288333..138155727 [GRCh38]
Chr9:9q34.2-34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:135203306-138100471) copy number loss Kleefstra syndrome 1 [RCV004720521] Chr9:135203306..138100471 [GRCh38]
Chr9:9q34.3
pathogenic
GRCh38/hg38 9q34.3(chr9:134642187-138121999) copy number loss Kleefstra syndrome 1 [RCV004720503] Chr9:134642187..138121999 [GRCh38]
Chr9:9q34.3
pathogenic
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:375
Count of miRNA genes:302
Interacting mature miRNAs:327
Transcripts:ENST00000343053
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
1204 2436 2788 2249 4966 1724 2350 5 624 1950 465 2270 7296 6464 53 3728 1 851 1740 1616 173

Sequence


Ensembl Acc Id: ENST00000343053   ⟹   ENSP00000339495
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl9137,255,327 - 137,273,542 (+)Ensembl
RefSeq Acc Id: NM_015456   ⟹   NP_056271
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh389137,255,327 - 137,273,542 (+)NCBI
GRCh379140,149,759 - 140,168,000 (+)ENTREZGENE
Build 369139,269,768 - 139,287,815 (+)NCBI Archive
HuRef9109,609,072 - 109,627,292 (+)ENTREZGENE
CHM1_19140,298,486 - 140,316,577 (+)NCBI
T2T-CHM13v2.09149,492,996 - 149,511,192 (+)NCBI
Sequence:
RefSeq Acc Id: NP_056271   ⟸   NM_015456
- UniProtKB: A0A5H1ZRP4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000339495   ⟸   ENST00000343053

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q8WX92-F1-model_v2 AlphaFold Q8WX92 1-580 view protein structure

Promoters
RGD ID:7216799
Promoter ID:EPDNEW_H14144
Type:initiation region
Name:NELFB_2
Description:negative elongation factor complex member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14145  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh389137,255,217 - 137,255,277EPDNEW
RGD ID:7216797
Promoter ID:EPDNEW_H14145
Type:initiation region
Name:NELFB_1
Description:negative elongation factor complex member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H14144  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh389137,255,327 - 137,255,387EPDNEW
RGD ID:6808169
Promoter ID:HG_KWN:65736
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   K562,   Lymphoblastoid,   NB4
Transcripts:OTTHUMT00000254710
Position:
Human AssemblyChrPosition (strand)Source
Build 369139,268,471 - 139,269,912 (+)MPROMDB
RGD ID:6814429
Promoter ID:HG_MGC:1004
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:Lymphoblastoid
Transcripts:BC011892
Position:
Human AssemblyChrPosition (strand)Source
Build 369139,270,386 - 139,270,886 (+)MPROMDB

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:24324 AgrOrtholog
COSMIC NELFB COSMIC
Ensembl Genes ENSG00000188986 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript ENST00000343053 ENTREZGENE, UniProtKB/TrEMBL
  ENST00000343053.6 UniProtKB/Swiss-Prot
GTEx ENSG00000188986 GTEx
HGNC ID HGNC:24324 ENTREZGENE
Human Proteome Map NELFB Human Proteome Map
InterPro COBRA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report hsa:25920 UniProtKB/Swiss-Prot
NCBI Gene 25920 ENTREZGENE
OMIM 611180 OMIM
PANTHER NEGATIVE ELONGATION FACTOR B UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  PTHR13503 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam COBRA1 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PharmGKB PA162382703 PharmGKB
UniProt A0A5H1ZRP4 ENTREZGENE, UniProtKB/TrEMBL
  NELFB_HUMAN UniProtKB/Swiss-Prot, ENTREZGENE
UniProt Secondary A0A0X1KG71 UniProtKB/Swiss-Prot
  A2BFA3 UniProtKB/Swiss-Prot
  Q96EW5 UniProtKB/Swiss-Prot
  Q9H9R4 UniProtKB/Swiss-Prot
  Q9ULN8 UniProtKB/Swiss-Prot
  Q9Y3W0 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-02-06 NELFB  negative elongation factor complex member B  COBRA1  cofactor of BRCA1  Symbol and/or name change 5135510 APPROVED