RMDN3 (regulator of microtubule dynamics 3) - Rat Genome Database

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Gene: RMDN3 (regulator of microtubule dynamics 3) Homo sapiens
Analyze
Symbol: RMDN3
Name: regulator of microtubule dynamics 3
RGD ID: 1602700
HGNC Page HGNC:25550
Description: Enables microtubule binding activity. Involved in intracellular calcium ion homeostasis. Located in several cellular components, including intercellular bridge; mitochondrial outer membrane; and spindle.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: cerebral protein 10; FAM82A2; FAM82C; family with sequence similarity 82, member A2; family with sequence similarity 82, member C; FLJ10579; hRMD-3; microtubule-associated protein; protein tyrosine phosphatase-interacting protein 51; ptpip51; regulator of microtubule dynamics protein 3; RMD-3; RMD3; TCPTP-interacting protein 51
RGD Orthologs
Mouse
Rat
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Allele / Splice: See ClinVar data
Latest Assembly: GRCh38 - Human Genome Assembly GRCh38
Position:
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,735,887 - 40,755,254 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,733,696 - 40,755,851 (-)Ensemblhg38GRCh38
GRCh371541,028,085 - 41,047,452 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,815,378 - 38,834,750 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1517,795,976 - 17,815,353 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,876,217 - 17,895,600 (-)NCBIHuRef
CHM1_11541,148,086 - 41,167,485 (-)NCBICHM1_1
T2T-CHM13v2.01538,541,582 - 38,561,277 (-)NCBIT2T-CHM13v2.0
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:12975309   PMID:14702039   PMID:15324660   PMID:15609043   PMID:16038965   PMID:16344560   PMID:16820967   PMID:17207965   PMID:17353931   PMID:18029348   PMID:18070910  
PMID:18771726   PMID:18854601   PMID:19012732   PMID:19124842   PMID:19691131   PMID:19773279   PMID:20360068   PMID:20627780   PMID:20877624   PMID:20936779   PMID:21163940   PMID:21513978  
PMID:21873635   PMID:21900206   PMID:21972092   PMID:21988832   PMID:22131369   PMID:22544307   PMID:22810586   PMID:22939629   PMID:22990118   PMID:23444366   PMID:24501773   PMID:25609649  
PMID:25862004   PMID:26186194   PMID:26496610   PMID:26972000   PMID:27499296   PMID:27734150   PMID:28132811   PMID:28380382   PMID:28514442   PMID:28548902   PMID:28675297   PMID:28712289  
PMID:29299163   PMID:29507755   PMID:29509190   PMID:29568061   PMID:29791485   PMID:29858488   PMID:30575818   PMID:30841933   PMID:31056421   PMID:31073040   PMID:31527615   PMID:31586073  
PMID:31723608   PMID:31753913   PMID:31871319   PMID:32296183   PMID:32682953   PMID:32687490   PMID:32788342   PMID:32807901   PMID:32877691   PMID:33124732   PMID:33301849   PMID:33567341  
PMID:33618749   PMID:33938112   PMID:33961781   PMID:34079125   PMID:34312846   PMID:34432599   PMID:34709727   PMID:34800366   PMID:34964862   PMID:35240162   PMID:35271311   PMID:35509820  
PMID:35944360   PMID:36180527   PMID:36215168   PMID:36538041   PMID:36543142   PMID:37774976   PMID:37827155   PMID:38395965   PMID:40355756   PMID:40593736  


Genomics

Comparative Map Data
RMDN3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381540,735,887 - 40,755,254 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1540,733,696 - 40,755,851 (-)Ensemblhg38GRCh38
GRCh371541,028,085 - 41,047,452 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361538,815,378 - 38,834,750 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1517,795,976 - 17,815,353 (-)NCBICelera
Cytogenetic Map15q15.1NCBI
HuRef1517,876,217 - 17,895,600 (-)NCBIHuRef
CHM1_11541,148,086 - 41,167,485 (-)NCBICHM1_1
T2T-CHM13v2.01538,541,582 - 38,561,277 (-)NCBIT2T-CHM13v2.0
Rmdn3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm392118,967,479 - 118,987,515 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl2118,967,482 - 118,987,515 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm382119,136,998 - 119,157,034 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl2119,137,001 - 119,157,034 (-)Ensemblmm10GRCm38
MGSCv372118,962,734 - 118,982,770 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv362118,828,442 - 118,848,396 (-)NCBIMGSCv36mm8
Celera2120,287,522 - 120,307,997 (-)NCBICelera
Cytogenetic Map2E5NCBI
cM Map259.94NCBI
Rmdn3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr83126,579,811 - 126,601,016 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl3126,579,812 - 126,600,418 (-)EnsemblGRCr8
mRatBN7.23106,125,961 - 106,146,568 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl3106,125,951 - 106,146,586 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx3109,799,110 - 109,819,731 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.03118,394,646 - 118,415,267 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.03116,055,031 - 116,075,652 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.03110,943,843 - 110,964,449 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3110,943,826 - 110,964,452 (-)Ensemblrn6Rnor6.0
Rnor_5.03117,494,481 - 117,515,087 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.43105,651,318 - 105,671,841 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera3105,039,297 - 105,059,604 (-)NCBICelera
RGSC_v3.13105,547,751 - 105,568,231 (-)NCBI
Cytogenetic Map3q35NCBI
Rmdn3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554167,591,049 - 7,610,147 (-)Ensembl
ChiLan1.0NW_0049554167,591,049 - 7,610,164 (-)NCBIChiLan1.0ChiLan1.0
RMDN3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21629,976,840 - 29,996,369 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11534,128,288 - 34,147,804 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01519,676,789 - 19,696,297 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11537,928,987 - 37,948,407 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1537,929,628 - 37,947,856 (-)EnsemblpanPan2panpan1.1
RMDN3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1307,878,525 - 7,895,457 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl307,851,605 - 7,896,873 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha307,932,525 - 7,949,439 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0308,005,436 - 8,022,398 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl307,996,329 - 8,022,313 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1307,928,954 - 7,945,875 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0308,035,981 - 8,053,148 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0308,165,022 - 8,181,946 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rmdn3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864086,291,900 - 86,310,485 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364714,139,583 - 4,158,491 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364714,139,963 - 4,158,519 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RMDN3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1130,574,237 - 130,615,722 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11130,574,283 - 130,591,580 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21145,732,695 - 145,749,962 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RMDN3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12642,243,832 - 42,282,811 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2642,256,613 - 42,278,771 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604898,699,200 - 98,737,589 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rmdn3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248047,983,449 - 8,005,842 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248047,983,452 - 8,005,864 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rmdn3
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1597,316,216 - 97,336,310 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in RMDN3
40 total Variants

Clinical Variants
Name Type Condition(s) Position(s) Clinical significance
GRCh38/hg38 15q14-15.1(chr15:36531993-40787538)x3 copy number gain See cases [RCV000052341] Chr15:36531993..40787538 [GRCh38]
Chr15:36824194..41079736 [GRCh37]
Chr15:34611486..38867028 [NCBI36]
Chr15:15q14-15.1		 pathogenic
NM_018145.2(RMDN3):c.525-9C>T single nucleotide variant Lung cancer [RCV000099486] Chr15:40745268 [GRCh38]
Chr15:41037466 [GRCh37]
Chr15:15q15.1		 uncertain significance
GRCh37/hg19 15q11.2-26.3(chr15:20733395-102511616)x4 copy number gain See cases [RCV000447765] Chr15:20733395..102511616 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112)x3 copy number gain See cases [RCV000510717] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
GRCh37/hg19 15q11.2-26.3(chr15:22770422-102429112) copy number gain See cases [RCV000512019] Chr15:22770422..102429112 [GRCh37]
Chr15:15q11.2-26.3		 pathogenic
NM_018145.3(RMDN3):c.739G>C (p.Glu247Gln) single nucleotide variant not specified [RCV004321100] Chr15:40745045 [GRCh38]
Chr15:41037243 [GRCh37]
Chr15:15q15.1		 uncertain significance
GRCh37/hg19 15q14-15.1 chr15:34638237..42057083 complex variant complex Spindle cell sarcoma [RCV000714282] Chr15:34640169..42054561 [GRCh37]
Chr15:15q14-15.1		 pathogenic
Single allele duplication not provided [RCV000677926] Chr15:31115047..102354857 [GRCh37]
Chr15:15q13.2-26.3		 pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20071673-102461162)x3 copy number gain not provided [RCV000751156] Chr15:20071673..102461162 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
GRCh37/hg19 15q11.1-26.3(chr15:20016811-102493540)x3 copy number gain not provided [RCV000751155] Chr15:20016811..102493540 [GRCh37]
Chr15:15q11.1-26.3		 pathogenic
NM_018145.3(RMDN3):c.1148A>G (p.Glu383Gly) single nucleotide variant not specified [RCV004303185] Chr15:40737704 [GRCh38]
Chr15:41029902 [GRCh37]
Chr15:15q15.1		 uncertain significance
GRCh37/hg19 15q15.1(chr15:40464942-41196807)x4 copy number gain not provided [RCV001259208] Chr15:40464942..41196807 [GRCh37]
Chr15:15q15.1		 uncertain significance
NC_000015.9:g.(?_32964879)_(91358519_?)dup duplication Bloom syndrome [RCV001343104]|Familial colorectal cancer [RCV001325176] Chr15:32964879..91358519 [GRCh37]
Chr15:15q13.3-26.1		 uncertain significance
NC_000015.9:g.(?_40987528)_(41230232_?)dup duplication not provided [RCV003113134] Chr15:40987528..41230232 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.817C>T (p.Arg273Trp) single nucleotide variant not specified [RCV004304485] Chr15:40744140 [GRCh38]
Chr15:41036338 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.752G>A (p.Gly251Asp) single nucleotide variant not specified [RCV004198183] Chr15:40745032 [GRCh38]
Chr15:41037230 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.255A>T (p.Glu85Asp) single nucleotide variant not specified [RCV004127309] Chr15:40752111 [GRCh38]
Chr15:41044309 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.835C>T (p.Arg279Cys) single nucleotide variant not specified [RCV004233870] Chr15:40744122 [GRCh38]
Chr15:41036320 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.251G>A (p.Arg84Gln) single nucleotide variant not specified [RCV004127308] Chr15:40752115 [GRCh38]
Chr15:41044313 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.491G>A (p.Gly164Glu) single nucleotide variant not specified [RCV004087124] Chr15:40751459 [GRCh38]
Chr15:41043657 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.35C>T (p.Ala12Val) single nucleotide variant not specified [RCV004085930] Chr15:40754749 [GRCh38]
Chr15:41046947 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.428C>T (p.Pro143Leu) single nucleotide variant not specified [RCV004120975] Chr15:40751522 [GRCh38]
Chr15:41043720 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.1009A>G (p.Ser337Gly) single nucleotide variant not specified [RCV004217445] Chr15:40738539 [GRCh38]
Chr15:41030737 [GRCh37]
Chr15:15q15.1		 likely benign
NM_018145.3(RMDN3):c.809A>G (p.Tyr270Cys) single nucleotide variant not specified [RCV004165273] Chr15:40744148 [GRCh38]
Chr15:41036346 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.314G>A (p.Arg105Gln) single nucleotide variant not specified [RCV004168970] Chr15:40752052 [GRCh38]
Chr15:41044250 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.1090A>C (p.Met364Leu) single nucleotide variant not specified [RCV004174757] Chr15:40738000 [GRCh38]
Chr15:41030198 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.55G>T (p.Gly19Cys) single nucleotide variant not specified [RCV004263881] Chr15:40754729 [GRCh38]
Chr15:41046927 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.1324A>C (p.Lys442Gln) single nucleotide variant not specified [RCV004300743] Chr15:40737159 [GRCh38]
Chr15:41029357 [GRCh37]
Chr15:15q15.1		 uncertain significance
GRCh37/hg19 15q11.2-21.2(chr15:22770421-50347130)x3 copy number gain not specified [RCV003987108] Chr15:22770421..50347130 [GRCh37]
Chr15:15q11.2-21.2		 pathogenic
GRCh37/hg19 15q15.1(chr15:40892419-41125118)x3 copy number gain not specified [RCV003987091] Chr15:40892419..41125118 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.478A>G (p.Thr160Ala) single nucleotide variant not specified [RCV004454140] Chr15:40751472 [GRCh38]
Chr15:41043670 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.920A>C (p.Glu307Ala) single nucleotide variant not specified [RCV004454145] Chr15:40740184 [GRCh38]
Chr15:41032382 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.879G>C (p.Glu293Asp) single nucleotide variant not specified [RCV004454144] Chr15:40744078 [GRCh38]
Chr15:41036276 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.764G>C (p.Gly255Ala) single nucleotide variant not specified [RCV004454143] Chr15:40745020 [GRCh38]
Chr15:41037218 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.1349T>G (p.Val450Gly) single nucleotide variant not specified [RCV004454139] Chr15:40737134 [GRCh38]
Chr15:41029332 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.479C>T (p.Thr160Met) single nucleotide variant not specified [RCV004454141] Chr15:40751471 [GRCh38]
Chr15:41043669 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.818G>A (p.Arg273Gln) single nucleotide variant not specified [RCV004663330] Chr15:40744139 [GRCh38]
Chr15:41036337 [GRCh37]
Chr15:15q15.1		 uncertain significance
NC_000015.9:g.(?_38545387)_(42105565_?)dup duplication Mosaic variegated aneuploidy syndrome 1 [RCV004583016] Chr15:38545387..42105565 [GRCh37]
Chr15:15q14-15.1		 uncertain significance
NM_018145.3(RMDN3):c.496A>C (p.Thr166Pro) single nucleotide variant not specified [RCV004663329] Chr15:40751454 [GRCh38]
Chr15:41043652 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.577A>G (p.Ser193Gly) single nucleotide variant not specified [RCV004663331] Chr15:40745207 [GRCh38]
Chr15:41037405 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.356C>T (p.Ala119Val) single nucleotide variant not specified [RCV004858297] Chr15:40752010 [GRCh38]
Chr15:41044208 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.313C>G (p.Arg105Gly) single nucleotide variant not specified [RCV004858299] Chr15:40752053 [GRCh38]
Chr15:41044251 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.560G>A (p.Arg187Gln) single nucleotide variant not specified [RCV004858298] Chr15:40745224 [GRCh38]
Chr15:41037422 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.295A>G (p.Thr99Ala) single nucleotide variant not specified [RCV004858296] Chr15:40752071 [GRCh38]
Chr15:41044269 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.385C>T (p.His129Tyr) single nucleotide variant not specified [RCV004847311] Chr15:40751565 [GRCh38]
Chr15:41043763 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.851A>C (p.Tyr284Ser) single nucleotide variant not specified [RCV004847312] Chr15:40744106 [GRCh38]
Chr15:41036304 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.770G>A (p.Arg257Gln) single nucleotide variant not specified [RCV005274288] Chr15:40745014 [GRCh38]
Chr15:41037212 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.1064C>G (p.Ala355Gly) single nucleotide variant not specified [RCV005274290] Chr15:40738026 [GRCh38]
Chr15:41030224 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.1352C>T (p.Thr451Met) single nucleotide variant not specified [RCV005274291] Chr15:40737131 [GRCh38]
Chr15:41029329 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.738C>G (p.Asp246Glu) single nucleotide variant not specified [RCV005274292] Chr15:40745046 [GRCh38]
Chr15:41037244 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.410C>T (p.Ala137Val) single nucleotide variant not specified [RCV005274293] Chr15:40751540 [GRCh38]
Chr15:41043738 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.1022G>A (p.Arg341His) single nucleotide variant not specified [RCV005274296] Chr15:40738526 [GRCh38]
Chr15:41030724 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.1286G>T (p.Arg429Ile) single nucleotide variant not specified [RCV005274294] Chr15:40737197 [GRCh38]
Chr15:41029395 [GRCh37]
Chr15:15q15.1		 uncertain significance
NM_018145.3(RMDN3):c.928G>A (p.Ala310Thr) single nucleotide variant not specified [RCV005274289] Chr15:40740176 [GRCh38]
Chr15:41032374 [GRCh37]
Chr15:15q15.1		 uncertain significance
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:3129
Count of miRNA genes:983
Interacting mature miRNAs:1240
Transcripts:ENST00000260385, ENST00000338376, ENST00000557831, ENST00000558232, ENST00000558364, ENST00000558560, ENST00000558777, ENST00000560460, ENST00000560588, ENST00000560779, ENST00000560905
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCh38)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2289410BW327_HBody weight QTL 327 (human)3.320.0001Body fat amount151998012945980129Human
407266276GWAS915252_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS915252 (human)7e-09total cholesterol measurement, high density lipoprotein cholesterol measurement154074909440749095Human
597043829GWAS1139903_Hbody height QTL GWAS1139903 (human)1e-08body height154074558940745590Human
1559411SCL107_HSerum cholesterol level QTL 107 (human)3.88Lipid leveltriglyceride152654355252543552Human
407108935GWAS757911_Hbody height QTL GWAS757911 (human)1e-08body height154074558940745590Human
628586462GWAS2494691_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS2494691 (human)7e-09blood HDL cholesterol amount (VT:0000184)blood high density lipoprotein cholesterol level (CMO:0000052)154074909440749095Human
1559354LDLPS4_HLow density lipoprotein particle size QTL 4 (human)2.20.019LDL particle size153479023060790230Human
2289420BW314_HBody weight QTL 314 (human)2.720.0003Body weightlean mass151998012945980129Human
597153593GWAS1249667_Htotal cholesterol measurement, high density lipoprotein cholesterol measurement QTL GWAS1249667 (human)7e-09total cholesterol measurement, high density lipoprotein cholesterol measurement154074909440749095Human
1643273BW330_HBody Weight QTL 330 (human)1.050.014Body weightbody mass index152686671952866719Human
598002358GWAS1721657_Hbody height QTL GWAS1721657 (human)1e-08body height154074558940745590Human
2289430BMD7_HBone mineral density QTL 7 (human)3.320.0001Bone mineral density151998012945980129Human
2299958PRSTS330_HProstate tumor susceptibility QTL 330 (human)1.020.0151Prostate tumor susceptibility153479023060790230Human
1643523BW284_HBody Weight QTL 284 (human)1.950.0013Body weight152179288947792889Human

Markers in Region
D15S709E  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371541,034,518 - 41,034,617UniSTSGRCh37
Build 361538,821,810 - 38,821,909RGDNCBI36
Celera1517,802,419 - 17,802,518RGD
Cytogenetic Map15q15.1UniSTS
HuRef1517,882,661 - 17,882,760UniSTS
GeneMap99-GB4 RH Map15127.05UniSTS
A002D30  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371541,028,237 - 41,028,351UniSTSGRCh37
Build 361538,815,529 - 38,815,643RGDNCBI36
Celera1517,796,127 - 17,796,241RGD
Cytogenetic Map15q15.1UniSTS
HuRef1517,876,368 - 17,876,482UniSTS
GeneMap99-GB4 RH Map15127.9UniSTS
STS-W60903  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371541,028,126 - 41,028,308UniSTSGRCh37
Build 361538,815,418 - 38,815,600RGDNCBI36
Celera1517,796,016 - 17,796,198RGD
Cytogenetic Map15q15.1UniSTS
HuRef1517,876,257 - 17,876,439UniSTS
GeneMap99-GB4 RH Map15146.85UniSTS
WI-20095  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371541,028,181 - 41,028,430UniSTSGRCh37
Build 361538,815,473 - 38,815,722RGDNCBI36
Celera1517,796,071 - 17,796,320RGD
Cytogenetic Map15q15.1UniSTS
HuRef1517,876,312 - 17,876,561UniSTS
GeneMap99-GB4 RH Map15146.8UniSTS
Whitehead-RH Map1573.4UniSTS
NCBI RH Map1590.1UniSTS
RH77788  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371541,028,184 - 41,028,306UniSTSGRCh37
Build 361538,815,476 - 38,815,598RGDNCBI36
Celera1517,796,074 - 17,796,196RGD
Cytogenetic Map15q15.1UniSTS
HuRef1517,876,315 - 17,876,437UniSTS
GeneMap99-GB4 RH Map15125.77UniSTS
NCBI RH Map1590.1UniSTS
G33072  
Human AssemblyChrPosition (strand)SourceJBrowse
GRCh371541,028,237 - 41,028,351UniSTSGRCh37
Celera1517,796,127 - 17,796,241UniSTS
Cytogenetic Map15q15.1UniSTS
HuRef1517,876,368 - 17,876,482UniSTS
D5S447E  
Human AssemblyChrPosition (strand)SourceJBrowse
Cytogenetic Map15q15.1UniSTS


Expression

RNA-SEQ Expression

adipose tissue
alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
entire extraembryonic component
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
pharyngeal arch
renal system
reproductive system
respiratory system
sensory system
visual system
1204 2439 2788 2253 4974 1726 2351 6 624 1951 465 2270 7306 6472 53 3734 1 852 1744 1617 175 1

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001304802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001323894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001323895 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001323896 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001323897 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_018145 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_011521755 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_054378358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA772280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AB000782 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC012476 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AJ242719 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK001441 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK025963 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK090731 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK092058 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK097286 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123192 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AK123282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX083366 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX119045 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AX876751 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AY358793 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC008970 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC063844 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BR000691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH471125 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CP068263 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA280017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DA592879 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENST00000260385   ⟹   ENSP00000260385
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,884 - 40,755,851 (-)Ensembl
Ensembl Acc Id: ENST00000338376   ⟹   ENSP00000342493
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,887 - 40,755,254 (-)Ensembl
Ensembl Acc Id: ENST00000557831
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,736,338 - 40,737,820 (-)Ensembl
Ensembl Acc Id: ENST00000558232   ⟹   ENSP00000453535
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,736,427 - 40,745,211 (-)Ensembl
Ensembl Acc Id: ENST00000558364
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,740,150 - 40,747,782 (-)Ensembl
Ensembl Acc Id: ENST00000558560
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,737,678 - 40,752,178 (-)Ensembl
Ensembl Acc Id: ENST00000558777   ⟹   ENSP00000453357
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,888 - 40,755,246 (-)Ensembl
Ensembl Acc Id: ENST00000560460   ⟹   ENSP00000453978
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,738,510 - 40,755,253 (-)Ensembl
Ensembl Acc Id: ENST00000560588
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,885 - 40,739,680 (-)Ensembl
Ensembl Acc Id: ENST00000560779
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,737,629 - 40,744,305 (-)Ensembl
Ensembl Acc Id: ENST00000560905   ⟹   ENSP00000453199
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,744,094 - 40,755,336 (-)Ensembl
Ensembl Acc Id: ENST00000862129   ⟹   ENSP00000532188
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,733,696 - 40,755,254 (-)Ensembl
Ensembl Acc Id: ENST00000862130   ⟹   ENSP00000532189
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,887 - 40,755,282 (-)Ensembl
Ensembl Acc Id: ENST00000862131   ⟹   ENSP00000532190
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,886 - 40,755,254 (-)Ensembl
Ensembl Acc Id: ENST00000862132   ⟹   ENSP00000532191
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,887 - 40,755,254 (-)Ensembl
Ensembl Acc Id: ENST00000862133   ⟹   ENSP00000532192
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,888 - 40,755,254 (-)Ensembl
Ensembl Acc Id: ENST00000862134   ⟹   ENSP00000532193
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,889 - 40,755,254 (-)Ensembl
Ensembl Acc Id: ENST00000862135   ⟹   ENSP00000532194
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,888 - 40,755,252 (-)Ensembl
Ensembl Acc Id: ENST00000862136   ⟹   ENSP00000532195
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,887 - 40,755,248 (-)Ensembl
Ensembl Acc Id: ENST00000862137   ⟹   ENSP00000532196
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,887 - 40,755,237 (-)Ensembl
Ensembl Acc Id: ENST00000862138   ⟹   ENSP00000532197
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,887 - 40,755,107 (-)Ensembl
Ensembl Acc Id: ENST00000918999   ⟹   ENSP00000589058
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,887 - 40,755,256 (-)Ensembl
Ensembl Acc Id: ENST00000919000   ⟹   ENSP00000589059
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,887 - 40,755,253 (-)Ensembl
Ensembl Acc Id: ENST00000919001   ⟹   ENSP00000589060
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,887 - 40,755,235 (-)Ensembl
Ensembl Acc Id: ENST00000951448   ⟹   ENSP00000621507
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,887 - 40,755,282 (-)Ensembl
Ensembl Acc Id: ENST00000951449   ⟹   ENSP00000621508
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,888 - 40,755,282 (-)Ensembl
Ensembl Acc Id: ENST00000951450   ⟹   ENSP00000621509
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,888 - 40,755,254 (-)Ensembl
Ensembl Acc Id: ENST00000951451   ⟹   ENSP00000621510
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh38.p14 Ensembl1540,735,892 - 40,755,245 (-)Ensembl
RefSeq Acc Id: NM_001304802   ⟹   NP_001291731
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,735,887 - 40,755,254 (-)NCBI
CHM1_11541,148,082 - 41,167,561 (-)NCBI
T2T-CHM13v2.01538,541,582 - 38,561,277 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001323894   ⟹   NP_001310823
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,735,887 - 40,755,254 (-)NCBI
CHM1_11541,148,082 - 41,167,561 (-)NCBI
T2T-CHM13v2.01538,541,582 - 38,561,277 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001323895   ⟹   NP_001310824
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,735,887 - 40,755,254 (-)NCBI
CHM1_11541,148,082 - 41,167,561 (-)NCBI
T2T-CHM13v2.01538,541,582 - 38,561,277 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001323896   ⟹   NP_001310825
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,735,887 - 40,755,254 (-)NCBI
CHM1_11541,148,082 - 41,167,561 (-)NCBI
T2T-CHM13v2.01538,541,582 - 38,561,277 (-)NCBI
Sequence:
RefSeq Acc Id: NM_001323897   ⟹   NP_001310826
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,735,887 - 40,755,254 (-)NCBI
CHM1_11541,148,082 - 41,167,561 (-)NCBI
T2T-CHM13v2.01538,541,582 - 38,561,277 (-)NCBI
Sequence:
RefSeq Acc Id: NM_018145   ⟹   NP_060615
RefSeq Status: VALIDATED
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,735,887 - 40,755,254 (-)NCBI
GRCh371541,028,085 - 41,047,458 (-)NCBI
Build 361538,815,378 - 38,834,750 (-)NCBI Archive
HuRef1517,876,217 - 17,895,600 (-)ENTREZGENE
CHM1_11541,148,082 - 41,167,561 (-)NCBI
T2T-CHM13v2.01538,541,582 - 38,561,277 (-)NCBI
Sequence:
RefSeq Acc Id: XM_011521755   ⟹   XP_011520057
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,735,887 - 40,747,734 (-)NCBI
Sequence:
RefSeq Acc Id: XM_054378358   ⟹   XP_054234333
Type: CODING
Position:
Human AssemblyChrPosition (strand)Source
T2T-CHM13v2.01538,541,582 - 38,553,379 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001291731 (Get FASTA)   NCBI Sequence Viewer  
  NP_001310823 (Get FASTA)   NCBI Sequence Viewer  
  NP_001310824 (Get FASTA)   NCBI Sequence Viewer  
  NP_001310825 (Get FASTA)   NCBI Sequence Viewer  
  NP_001310826 (Get FASTA)   NCBI Sequence Viewer  
  NP_060615 (Get FASTA)   NCBI Sequence Viewer  
  XP_011520057 (Get FASTA)   NCBI Sequence Viewer  
  XP_054234333 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAH08970 (Get FASTA)   NCBI Sequence Viewer  
  AAH63844 (Get FASTA)   NCBI Sequence Viewer  
  AAQ89153 (Get FASTA)   NCBI Sequence Viewer  
  BAA91693 (Get FASTA)   NCBI Sequence Viewer  
  BAB15298 (Get FASTA)   NCBI Sequence Viewer  
  BAB46923 (Get FASTA)   NCBI Sequence Viewer  
  BAC85554 (Get FASTA)   NCBI Sequence Viewer  
  BAG52475 (Get FASTA)   NCBI Sequence Viewer  
  BAG53446 (Get FASTA)   NCBI Sequence Viewer  
  BAG53885 (Get FASTA)   NCBI Sequence Viewer  
  CAC33289 (Get FASTA)   NCBI Sequence Viewer  
  CAC38596 (Get FASTA)   NCBI Sequence Viewer  
  CAC39480 (Get FASTA)   NCBI Sequence Viewer  
  CAE89415 (Get FASTA)   NCBI Sequence Viewer  
  EAW92436 (Get FASTA)   NCBI Sequence Viewer  
  EAW92437 (Get FASTA)   NCBI Sequence Viewer  
  EAW92438 (Get FASTA)   NCBI Sequence Viewer  
  EAW92439 (Get FASTA)   NCBI Sequence Viewer  
  EAW92440 (Get FASTA)   NCBI Sequence Viewer  
  EAW92441 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSP00000260385.6
  ENSP00000342493
  ENSP00000342493.3
  ENSP00000453535
  ENSP00000532190
  ENSP00000621508
GenBank Protein FAA00416 (Get FASTA)   NCBI Sequence Viewer  
  Q96TC7 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_060615   ⟸   NM_018145
- Peptide Label: isoform 1
- UniProtKB: Q9H6G1 (UniProtKB/Swiss-Prot),   Q96SD6 (UniProtKB/Swiss-Prot),   Q96H23 (UniProtKB/Swiss-Prot),   Q6ZWE9 (UniProtKB/Swiss-Prot),   B3KRR3 (UniProtKB/Swiss-Prot),   A9UMZ9 (UniProtKB/Swiss-Prot),   Q9NVQ6 (UniProtKB/Swiss-Prot),   Q96TC7 (UniProtKB/Swiss-Prot),   B3KUI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001291731   ⟸   NM_001304802
- Peptide Label: isoform 1
- UniProtKB: Q9H6G1 (UniProtKB/Swiss-Prot),   Q96SD6 (UniProtKB/Swiss-Prot),   Q96H23 (UniProtKB/Swiss-Prot),   Q6ZWE9 (UniProtKB/Swiss-Prot),   B3KRR3 (UniProtKB/Swiss-Prot),   A9UMZ9 (UniProtKB/Swiss-Prot),   Q9NVQ6 (UniProtKB/Swiss-Prot),   Q96TC7 (UniProtKB/Swiss-Prot),   B3KUI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_011520057   ⟸   XM_011521755
- Peptide Label: isoform X1
- UniProtKB: H0YMB1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001310823   ⟸   NM_001323894
- Peptide Label: isoform 1
- UniProtKB: Q9H6G1 (UniProtKB/Swiss-Prot),   Q96SD6 (UniProtKB/Swiss-Prot),   Q96H23 (UniProtKB/Swiss-Prot),   Q6ZWE9 (UniProtKB/Swiss-Prot),   B3KRR3 (UniProtKB/Swiss-Prot),   A9UMZ9 (UniProtKB/Swiss-Prot),   Q9NVQ6 (UniProtKB/Swiss-Prot),   Q96TC7 (UniProtKB/Swiss-Prot),   B3KUI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001310825   ⟸   NM_001323896
- Peptide Label: isoform 3
- UniProtKB: B3KUI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001310826   ⟸   NM_001323897
- Peptide Label: isoform 3
- UniProtKB: B3KUI4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001310824   ⟸   NM_001323895
- Peptide Label: isoform 2
- UniProtKB: B3KUI4 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSP00000453535   ⟸   ENST00000558232
Ensembl Acc Id: ENSP00000453357   ⟸   ENST00000558777
Ensembl Acc Id: ENSP00000342493   ⟸   ENST00000338376
Ensembl Acc Id: ENSP00000453978   ⟸   ENST00000560460
Ensembl Acc Id: ENSP00000453199   ⟸   ENST00000560905
Ensembl Acc Id: ENSP00000260385   ⟸   ENST00000260385
RefSeq Acc Id: XP_054234333   ⟸   XM_054378358
- Peptide Label: isoform X1
- UniProtKB: H0YMB1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSP00000589059   ⟸   ENST00000919000
Ensembl Acc Id: ENSP00000532193   ⟸   ENST00000862134
Ensembl Acc Id: ENSP00000532192   ⟸   ENST00000862133
Ensembl Acc Id: ENSP00000621509   ⟸   ENST00000951450
Ensembl Acc Id: ENSP00000532190   ⟸   ENST00000862131
Ensembl Acc Id: ENSP00000621507   ⟸   ENST00000951448
Ensembl Acc Id: ENSP00000532196   ⟸   ENST00000862137
Ensembl Acc Id: ENSP00000621510   ⟸   ENST00000951451
Ensembl Acc Id: ENSP00000532188   ⟸   ENST00000862129
Ensembl Acc Id: ENSP00000589060   ⟸   ENST00000919001
Ensembl Acc Id: ENSP00000532189   ⟸   ENST00000862130
Ensembl Acc Id: ENSP00000532195   ⟸   ENST00000862136
Ensembl Acc Id: ENSP00000621508   ⟸   ENST00000951449
Ensembl Acc Id: ENSP00000532191   ⟸   ENST00000862132
Ensembl Acc Id: ENSP00000589058   ⟸   ENST00000918999
Ensembl Acc Id: ENSP00000532197   ⟸   ENST00000862138
Ensembl Acc Id: ENSP00000532194   ⟸   ENST00000862135

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q96TC7-F1-model_v2 AlphaFold Q96TC7 1-470 view protein structure

Promoters
RGD ID:6792332
Promoter ID:HG_KWN:21059
Type:CpG-Island
SO ACC ID:SO:0000170
Source:MPROMDB
Tissues & Cell Lines:CD4+TCell,   CD4+TCell_12Hour,   CD4+TCell_2Hour,   HeLa_S3,   Jurkat,   K562,   Lymphoblastoid,   NB4
Transcripts:ENST00000397465,   NM_018145,   OTTHUMT00000252357,   UC001ZMO.1
Position:
Human AssemblyChrPosition (strand)Source
Build 361538,834,121 - 38,834,987 (-)MPROMDB
RGD ID:7229121
Promoter ID:EPDNEW_H20307
Type:initiation region
Name:RMDN3_2
Description:regulator of microtubule dynamics 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20308  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,754,859 - 40,754,919EPDNEW
RGD ID:7229125
Promoter ID:EPDNEW_H20308
Type:initiation region
Name:RMDN3_1
Description:regulator of microtubule dynamics 3
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_H20307  
Experiment Methods:Single-end sequencing.
Position:
Human AssemblyChrPosition (strand)Source
GRCh381540,755,248 - 40,755,308EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene HGNC:25550 AgrOrtholog
COSMIC RMDN3 COSMIC
Ensembl Genes ENSG00000137824 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENST00000260385.10 UniProtKB/Swiss-Prot
  ENST00000338376 ENTREZGENE
  ENST00000338376.8 UniProtKB/Swiss-Prot
  ENST00000558232 ENTREZGENE
  ENST00000862131 ENTREZGENE
  ENST00000951449 ENTREZGENE
Gene3D-CATH 1.25.40.10 UniProtKB/Swiss-Prot
GTEx ENSG00000137824 GTEx
HGNC ID HGNC:25550 ENTREZGENE
Human Proteome Map RMDN3 Human Proteome Map
InterPro RMD1-3_a_helical_rpt UniProtKB/Swiss-Prot
  TPR-like_helical_dom_sf UniProtKB/Swiss-Prot
KEGG Report hsa:55177 UniProtKB/Swiss-Prot
NCBI Gene 55177 ENTREZGENE
OMIM 611873 OMIM
PANTHER REGULATOR OF MICROTUBULE DYNAMICS PROTEIN UniProtKB/Swiss-Prot
  REGULATOR OF MICROTUBULE DYNAMICS PROTEIN 3 UniProtKB/Swiss-Prot
Pfam RMD1-3 UniProtKB/Swiss-Prot
PharmGKB PA162387926 PharmGKB
Superfamily-SCOP SSF48452 UniProtKB/Swiss-Prot
UniProt A9UMZ9 ENTREZGENE
  B3KRR3 ENTREZGENE
  B3KUI4 ENTREZGENE, UniProtKB/TrEMBL
  H0YLG5_HUMAN UniProtKB/TrEMBL
  H0YLV7_HUMAN UniProtKB/TrEMBL
  H0YMB1 ENTREZGENE, UniProtKB/TrEMBL
  H0YNE5_HUMAN UniProtKB/TrEMBL
  Q6ZWE9 ENTREZGENE
  Q96H23 ENTREZGENE
  Q96SD6 ENTREZGENE
  Q96TC7 ENTREZGENE
  Q9H6G1 ENTREZGENE
  Q9NVQ6 ENTREZGENE
  RMD3_HUMAN UniProtKB/Swiss-Prot
UniProt Secondary A9UMZ9 UniProtKB/Swiss-Prot
  B3KRR3 UniProtKB/Swiss-Prot
  Q6ZWE9 UniProtKB/Swiss-Prot
  Q96H23 UniProtKB/Swiss-Prot
  Q96SD6 UniProtKB/Swiss-Prot
  Q9H6G1 UniProtKB/Swiss-Prot
  Q9NVQ6 UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-01-16 RMDN3  regulator of microtubule dynamics 3  FAM82A2  family with sequence similarity 82, member A2  Symbol and/or name change 5135510 APPROVED