Pgk1-ps4 (phosphoglycerate kinase 1, pseudogene 4) - Rat Genome Database

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Gene: Pgk1-ps4 (phosphoglycerate kinase 1, pseudogene 4) Rattus norvegicus
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Symbol: Pgk1-ps4
Name: phosphoglycerate kinase 1, pseudogene 4
RGD ID: 1598340
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC300331; similar to phosphoglycerate kinase 1
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8810,364,188 - 10,365,426 (-)NCBIGRCr8
mRatBN7.282,079,273 - 2,080,541 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.082,089,736 - 2,091,004 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.082,113,527 - 2,114,813 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.481,483,481 - 1,484,719 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera81,946,578 - 1,947,846 (-)NCBICelera
Cytogenetic Map8q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Pgk1-ps4
8 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
71120Niddm21Non-insulin dependent diabetes mellitus QTL 213.73blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)813402289Rat
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000008 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-31830 BioCyc
NCBI Gene 300331 ENTREZGENE
PhenoGen Pgk1-ps4 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Pgk1-ps4  phosphoglycerate kinase 1, pseudogene 4  LOC300331  similar to phosphoglycerate kinase 1  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC300331  similar to phosphoglycerate kinase 1      Symbol and Name status set to provisional 70820 PROVISIONAL