Mtfr1-ps1 (mitochondrial fission regulator 1, pseudogene 1) - Rat Genome Database

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Pathways
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Gene: Mtfr1-ps1 (mitochondrial fission regulator 1, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Mtfr1-ps1 (Ensembl: AABR07053669.1)
Name: mitochondrial fission regulator 1, pseudogene 1 (Ensembl:mitochondrial fission regulator 1, pseudo 1)
RGD ID: 1598111
Description: INTERACTS WITH bisphenol A; leflunomide; testosterone
Type: pseudo (Ensembl: pseudogene)
Previously known as: LOC679959; similar to chondrocyte protein with a poly-proline region
Related Functional Gene: Mtfr1  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
NCBI Annotation Information: Genome Annotation Status: not in current annotation release
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rnor_6.03119,498,447 - 119,500,438 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl3119,498,796 - 119,499,805 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.03126,024,507 - 126,025,743 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.43114,564,288 - 114,565,297 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera3113,126,780 - 113,128,771 (+)NCBICelera
Cytogenetic Map3q36NCBI


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

Genomics

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:20
Count of miRNA genes:19
Interacting mature miRNAs:20
Transcripts:ENSRNOT00000015599
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

Markers in Region
RH141233  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.22101,712,146 - 101,712,334 (+)MAPPERmRatBN7.2
mRatBN7.23114,288,448 - 114,288,636 (+)MAPPERmRatBN7.2
Rnor_6.03119,500,161 - 119,500,348NCBIRnor6.0
Rnor_6.02104,039,514 - 104,039,701NCBIRnor6.0
Rnor_5.03126,025,998 - 126,026,185UniSTSRnor5.0
Rnor_5.02123,761,527 - 123,761,714UniSTSRnor5.0
RGSC_v3.43114,565,653 - 114,565,840UniSTSRGSC3.4
RGSC_v3.42104,333,613 - 104,333,800UniSTSRGSC3.4
Celera297,106,105 - 97,106,292UniSTS
Celera3113,128,494 - 113,128,681UniSTS
Cytogenetic Map3q36UniSTS
Cytogenetic Map2q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium
Low 1 3 17 4 18 4 1 4 7 10 9 11 1
Below cutoff 2 34 30 27 1 27 7 7 55 15 27 7

Sequence

Nucleotide Sequences
RefSeq Transcripts XR_591652 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_600326 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: ENSRNOT00000015599
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl3119,498,796 - 119,499,805 (+)Ensembl
RefSeq Acc Id: XR_591652
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.03119,498,462 - 119,500,438 (+)NCBI
RefSeq Acc Id: XR_600326
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera3113,126,795 - 113,128,771 (+)NCBI
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
Ensembl Genes ENSRNOG00000011715 Ensembl
NCBI Gene 679959 ENTREZGENE
PhenoGen Mtfr1-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-09-22 Mtfr1-ps1  mitochondrial fission regulator 1, pseudogene 1  LOC679959  similar to chondrocyte protein with a poly-proline region  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC679959  similar to chondrocyte protein with a poly-proline region      Symbol and Name status set to provisional 70820 PROVISIONAL