Hist1h4a (histone cluster 1 H4 family member A)

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Gene: Hist1h4a (histone cluster 1 H4 family member A) Rattus norvegicus

Analyze

No known orthologs.

Symbol:

Hist1h4a

Name:

histone cluster 1 H4 family member A

RGD ID:

1598087

Description:

INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; ammonium chloride; gentamycin

Type:

protein-coding

Previously known as:

histone cluster 1, H4a; LOC679983; similar to germinal histone H4 gene

RGD Orthologs

Alliance Genes

More Info

homologs ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

NCBI Annotation Information:

Genome Annotation Status: not in current annotation release

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rnor_6.0	17	43,617,161 - 43,617,705 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	17	45,471,001 - 45,472,090 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	17	48,523,565 - 48,524,114 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	17	41,000,246 - 41,001,335 (+)	NCBI		Celera
Cytogenetic Map	17	p11	NCBI

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

ammonium chloride (EXP)

gentamycin (EXP)

trichloroethene (EXP)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:14585971	PMID:14718166	PMID:18474616	PMID:19135898	PMID:19199708	PMID:19946888	PMID:20458337	PMID:20498094	PMID:21630459	PMID:21636898	PMID:22368283	PMID:22658674
PMID:22681889	PMID:23376485	PMID:23533145	PMID:23979707	PMID:24699735	PMID:25615412

Genomics

Markers in Region

UniSTS:491901

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	41,369,321 - 41,369,768 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	43,617,155 - 43,617,601	NCBI	Rnor6.0
Rnor_5.0	17	45,471,540 - 45,471,986	UniSTS	Rnor5.0
RGSC_v3.4	17	48,523,669 - 48,524,115	UniSTS	RGSC3.4
Celera	17	41,000,785 - 41,001,231	UniSTS
Cytogenetic Map	17	p11	UniSTS

UniSTS:493012

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	17	41,368,413 - 41,368,824 (+)	MAPPER	mRatBN7.2
Rnor_6.0	17	43,616,247 - 43,616,657	NCBI	Rnor6.0
Rnor_5.0	17	45,470,632 - 45,471,042	UniSTS	Rnor5.0
RGSC_v3.4	17	48,524,613 - 48,525,023	UniSTS	RGSC3.4
Celera	17	40,999,877 - 41,000,287	UniSTS
Cytogenetic Map	17	p11	UniSTS

Expression

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_001055174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_003752980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222399	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253980	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771676	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC130391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Reference Sequences

RefSeq Acc Id:

XM_001055174 ⟹ XP_001055174

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_5.0	17	45,471,001 - 45,472,090 (+)	NCBI
RGSC_v3.4	17	48,523,565 - 48,524,114 (-)	RGD

RefSeq Acc Id:	XM_003752980 ⟹ XP_003753028
RefSeq Status:
Type:	CODING
Position:	No map positions available.

RefSeq Acc Id:	XM_006222399 ⟹ XP_006222461
RefSeq Status:
Type:	CODING
Position:	No map positions available.

RefSeq Acc Id:

XM_006253980 ⟹ XP_006254042

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_5.0	17	45,471,001 - 45,472,090 (+)	NCBI

RefSeq Acc Id:

XM_008771676 ⟹ XP_008769898

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	17	43,617,161 - 43,617,705 (+)	NCBI

RefSeq Acc Id:

XM_008773969 ⟹ XP_008772191

RefSeq Status:

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Celera	17	41,000,791 - 41,001,335 (+)	NCBI

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1598087	AgrOrtholog
NCBI Gene	679983	ENTREZGENE
PhenoGen	Hist1h4a	PhenoGen

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2017-05-23	Hist1h4a	histone cluster 1 H4 family member A	Hist1h4a	histone cluster 1, H4a	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-08-09	Hist1h4a	histone cluster 1, H4a	LOC679983	similar to germinal histone H4 gene	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC679983	similar to germinal histone H4 gene			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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