Pcbp2-ps8 (poly(rC) binding protein 2, pseudogene 8) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Pcbp2-ps8 (poly(rC) binding protein 2, pseudogene 8) Rattus norvegicus
Analyze
Symbol: Pcbp2-ps8
Name: poly(rC) binding protein 2, pseudogene 8
RGD ID: 1597984
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC681289; poly(rC)-binding protein 2 pseudogene; similar to poly(rC) binding protein 2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81133,180,805 - 33,184,093 (+)NCBIGRCr8
mRatBN7.21119,693,958 - 19,697,409 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01119,726,857 - 19,817,316 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01123,459,164 - 23,462,452 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1119,611,054 - 19,614,342 (+)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Pcbp2-ps8
15 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111283104625121472Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)111647204744285911Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111897620824697116Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)111897620886241447Rat


Expression


Sequence

Nucleotide Sequences
GenBank Nucleotide JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22112 BioCyc
NCBI Gene 681289 ENTREZGENE
PhenoGen Pcbp2-ps8 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Pcbp2-ps8  poly(rC) binding protein 2, pseudogene 8  LOC681289  similar to poly(rC) binding protein 2  Symbol and Name Changed 1299863 APPROVED
2012-07-05 LOC681289  similar to poly(rC) binding protein 2  LOC681289  similar to poly(rC) binding protein 2  Gene reactivated at release of RGSC5.0 assembly 2298974 REACTIVATED
2008-05-28 LOC681289  similar to poly(rC) binding protein 2   LOC681289  similar to poly(rC) binding protein 2 (predicted)  'predicted' is removed from gene name 2292626 APPROVED