Antxrl3 (ANTXR like 3) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Antxrl3 (ANTXR like 3) Rattus norvegicus
Analyze
Symbol: Antxrl3 (Ensembl: LOC681303)
Name: ANTXR like 3 (Ensembl:similar to tumor endothelial marker 8 isoform 1 precursor)
RGD ID: 1596785
Description: Predicted to enable signaling receptor activity. Predicted to be located in membrane.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: AABR07024653.1; anthrax toxin receptor-like; leucine-rich repeat extensin-like protein 3; LOC108353091; LOC681303; similar to tumor endothelial marker 8 isoform 1 precursor
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8169,337,985 - 9,364,423 (+)NCBIGRCr8
mRatBN7.2169,331,506 - 9,358,181 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl169,332,418 - 9,355,173 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01610,303,891 - 10,361,476 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1610,343,436 - 10,355,995 (+)NCBIRnor6.0rn6Rnor6.0
Rnor_5.0168,664,083 - 8,682,167 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4169,648,038 - 9,670,504 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera165,853,918 - 5,917,435 (-)NCBICelera
Cytogenetic Map16p15NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics

Variants

.
Variants in Antxrl3
121 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631561Hcuc2Hepatic copper content QTL 22.8liver copper amount (VT:0003065)liver total copper weight (CMO:0001507)16139533949Rat
1582235Insul8Insulin level QTL 83.30.0063blood insulin amount (VT:0001560)calculated serum insulin level (CMO:0000359)16126727669Rat
2307172Activ4Activity QTL 43.710.00023locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)16133418960Rat
1354584Despr6Despair related QTL 63.10.0067locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16139533930Rat
2302380Slep6Serum leptin concentration QTL 63.36blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)16132139025Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1619639137Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16422760946975965Rat
1354625Despr7Despair related QTL 73.160.016locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)16144977551Rat
9590151Scort8Serum corticosterone level QTL 88.450.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)16130836262Rat
61338Bp23Blood pressure QTL 234.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16422760949227609Rat
61405Niddm6Non-insulin dependent diabetes mellitus QTL 63.660.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)16422760948972724Rat
631830Alc7Alcohol consumption QTL 72.9consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16126727669Rat
7411664Foco30Food consumption QTL 30110.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)16144588133Rat
1600378Arunc4Aerobic running capacity QTL 40.03exercise endurance trait (VT:0002332)maximum distance run on treadmill (CMO:0001406)1638024580345693Rat
70183BpQTLcluster13Blood pressure QTL cluster 133.654arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)16422760943025077Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760960252231Rat
1600369Hcas8Hepatocarcinoma susceptibility QTL 8liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)16122477621Rat
737825Alc13Alcohol consumption QTL 134.5consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16422760916039848Rat
2303566Bw90Body weight QTL 902body mass (VT:0001259)body weight (CMO:0000012)16139533930Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683223659492508Rat
2306902Bp339Blood pressure QTL 3390.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)16338015043025077Rat
1300133Rf24Renal function QTL 243.64blood creatinine amount (VT:0005328)creatinine clearance (CMO:0000765)16338015021361552Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683223659492508Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683223659492508Rat
634355Rends4Renal damage susceptibility QTL 40.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)16126727669Rat
61372Bp40Blood pressure QTL 402.2blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)16422773017696785Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)16285170915884239Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683223646053497Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683223659492508Rat
6903319Bw114Body weight QTL 1142.70.0037body mass (VT:0001259)body weight (CMO:0000012)16143534949Rat

Markers in Region
D16Got9  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2169,340,807 - 9,340,879 (+)MAPPERmRatBN7.2
Rnor_6.01610,351,826 - 10,351,897NCBIRnor6.0
Rnor_5.0168,672,468 - 8,672,539UniSTSRnor5.0
RGSC_v3.4169,656,184 - 9,656,256RGDRGSC3.4
RGSC_v3.4169,656,185 - 9,656,256UniSTSRGSC3.4
RGSC_v3.1169,656,183 - 9,656,254RGD
Celera165,869,805 - 5,869,876UniSTS
RH 3.4 Map1689.7RGD
RH 3.4 Map1689.7UniSTS
Cytogenetic Map16p16UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001416978 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587525 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600304 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600305 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600306 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600307 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600308 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600309 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600310 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600311 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094919 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094920 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094921 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094922 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094923 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039094924 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063275723 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000016 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000085561   ⟹   ENSRNOP00000096678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl169,332,418 - 9,355,173 (+)Ensembl
RefSeq Acc Id: NM_001416978   ⟹   NP_001403907
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,338,686 - 9,364,423 (+)NCBI
mRatBN7.2169,332,440 - 9,358,181 (+)NCBI
RefSeq Acc Id: XM_017600305   ⟹   XP_017455794
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,337,985 - 9,356,337 (+)NCBI
mRatBN7.2169,332,624 - 9,350,070 (+)NCBI
Rnor_6.01610,343,423 - 10,361,318 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039094919   ⟹   XP_038950847
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,337,985 - 9,361,310 (+)NCBI
mRatBN7.2169,332,452 - 9,358,172 (+)NCBI
RefSeq Acc Id: XM_039094920   ⟹   XP_038950848
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,337,993 - 9,361,310 (+)NCBI
mRatBN7.2169,331,506 - 9,358,172 (+)NCBI
RefSeq Acc Id: XM_039094921   ⟹   XP_038950849
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,338,979 - 9,361,310 (+)NCBI
mRatBN7.2169,332,741 - 9,358,172 (+)NCBI
RefSeq Acc Id: XM_039094922   ⟹   XP_038950850
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,349,839 - 9,361,310 (+)NCBI
mRatBN7.2169,343,597 - 9,358,174 (+)NCBI
RefSeq Acc Id: XM_039094923   ⟹   XP_038950851
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,349,839 - 9,361,310 (+)NCBI
mRatBN7.2169,343,597 - 9,358,174 (+)NCBI
RefSeq Acc Id: XM_039094924   ⟹   XP_038950852
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,350,882 - 9,361,310 (+)NCBI
mRatBN7.2169,344,640 - 9,358,175 (+)NCBI
RefSeq Acc Id: XM_063275723   ⟹   XP_063131793
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8169,349,610 - 9,361,310 (+)NCBI
RefSeq Acc Id: XP_017455794   ⟸   XM_017600305
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: XP_038950848   ⟸   XM_039094920
- Peptide Label: isoform X1
- UniProtKB: A0A8I6APR7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950847   ⟸   XM_039094919
- Peptide Label: isoform X1
- UniProtKB: A0A8I6APR7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950849   ⟸   XM_039094921
- Peptide Label: isoform X1
- UniProtKB: A0A8I6APR7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038950851   ⟸   XM_039094923
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038950850   ⟸   XM_039094922
- Peptide Label: isoform X2
RefSeq Acc Id: XP_038950852   ⟸   XM_039094924
- Peptide Label: isoform X4
RefSeq Acc Id: ENSRNOP00000096678   ⟸   ENSRNOT00000085561
RefSeq Acc Id: NP_001403907   ⟸   NM_001416978
RefSeq Acc Id: XP_063131793   ⟸   XM_063275723
- Peptide Label: isoform X3
Protein Domains
VWFA

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-12079 BioCyc
Ensembl Genes ENSRNOG00000055677 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000085561.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
InterPro Anthrax_toxin_rcpt_extracel UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene 681303 ENTREZGENE
PANTHER ANTHRAX TOXIN RECEPTOR UniProtKB/TrEMBL
  ANTHRAX TOXIN RECEPTOR-LIKE UniProtKB/TrEMBL
Pfam Anth_Ig UniProtKB/TrEMBL
  VWA UniProtKB/TrEMBL
PhenoGen Antxrl3 PhenoGen
PRINTS PRICHEXTENSN UniProtKB/TrEMBL
PROSITE VWFA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000055677 RatGTEx
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt A0A8I6APR7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Antxrl3  ANTXR like 3  LOC681303  similar to tumor endothelial marker 8 isoform 1 precursor  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC681303  similar to tumor endothelial marker 8 isoform 1 precursor  AABR07024653.1    Data merged from RGD:15009636 737654 PROVISIONAL
2021-03-09 LOC681303  similar to tumor endothelial marker 8 isoform 1 precursor  LOC108353091  leucine-rich repeat extensin-like protein 3  Data merged from RGD:11452679 737654 PROVISIONAL
2019-11-08 AABR07024653.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2016-08-02 LOC108353091  leucine-rich repeat extensin-like protein 3      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC681303  similar to tumor endothelial marker 8 isoform 1 precursor      Symbol and Name status set to provisional 70820 PROVISIONAL