Tas2r124 (taste receptor, type 2, member 124) - Rat Genome Database

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Gene: Tas2r124 (taste receptor, type 2, member 124) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Tas2r124
Name: taste receptor, type 2, member 124
RGD ID: 1596038
Description: Predicted to enable bitter taste receptor activity. Predicted to be involved in detection of chemical stimulus involved in sensory perception of bitter taste. Predicted to be active in membrane. Orthologous to human TAS2R13 (taste 2 receptor member 13).
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC690472; putative taste receptor T2R25; similar to taste receptor, type 2, member 124; T2R124; T2R25; taste receptor type 2 member 124; taste receptor type 2 member 25
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84167,761,944 - 167,762,873 (+)NCBIGRCr8
mRatBN7.24166,030,544 - 166,031,473 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4166,030,544 - 166,031,473 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4172,333,310 - 172,334,239 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04168,116,342 - 168,117,271 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04166,750,385 - 166,751,314 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04166,911,595 - 166,912,524 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4166,911,595 - 166,912,524 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04229,440,204 - 229,441,133 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44170,059,569 - 170,060,498 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4154,626,649 - 154,627,578 (+)NCBICelera
Cytogenetic Map4q42NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Tas2r124
4 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:58
Count of miRNA genes:54
Interacting mature miRNAs:56
Transcripts:ENSRNOT00000030813
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4144639524182687754Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4132422778177422778Rat
1582237Kidm34Kidney mass QTL 3440.0001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)4148090542168069246Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4144639524182687754Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)426775591168368347Rat
631683Bp116Blood pressure QTL 1160.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)4124303370169303370Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4126395976167139601Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4138503169179293946Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4155561574182687754Rat
1549827Scl46Serum cholesterol level QTL 463.5blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)4132396220177396220Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)493308457167139447Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4109866907167139601Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4125590636170590636Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4124778595169778595Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4145568712182687754Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
1300109Rf13Renal function QTL 133.91renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)4157710145182687754Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4123143783168143783Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)483428419177635233Rat
2303623Vencon2Ventilatory control QTL 23.8respiration trait (VT:0001943)minute ventilation (CMO:0000132)4135204660180204660Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4135699135180699135Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)485379421167139601Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4132642577167139601Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4146565735175236377Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4131730738167139601Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4138503169173369699Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4137755016181392681Rat
1331759Hrtrt13Heart rate QTL 133.54628heart pumping trait (VT:2000009)heart rate (CMO:0000002)4110275411168266883Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)411320076180699135Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4144639524182687754Rat
12798525Anxrr57Anxiety related response QTL 573.210.05locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4147278504167139601Rat


Expression

RNA-SEQ Expression

ectoderm
endocrine system
endoderm
exocrine system
hepatobiliary system
mesenchyme
nervous system
1 3 3 3 3 3 1

Sequence


Ensembl Acc Id: ENSRNOT00000030813   ⟹   ENSRNOP00000030727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4166,030,544 - 166,031,473 (+)Ensembl
Rnor_6.0 Ensembl4166,911,595 - 166,912,524 (+)Ensembl
RefSeq Acc Id: NM_001080938   ⟹   NP_001074407
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84167,761,944 - 167,762,873 (+)NCBI
mRatBN7.24166,030,544 - 166,031,473 (+)NCBI
Rnor_6.04166,911,595 - 166,912,524 (+)NCBI
Rnor_5.04229,440,204 - 229,441,133 (+)NCBI
RGSC_v3.44170,059,569 - 170,060,498 (+)RGD
Celera4154,626,649 - 154,627,578 (+)RGD
Sequence:
Protein Sequences
Protein RefSeqs NP_001074407 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein AAR13354 (Get FASTA)   NCBI Sequence Viewer  
  EDM01677 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000030727.2
  ENSRNOP00055037819
  ENSRNOP00060027822
  ENSRNOP00065015034
GenBank Protein Q67ES5 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: NP_001074407   ⟸   NM_001080938
- UniProtKB: Q67ES5 (UniProtKB/Swiss-Prot),   A6IMB2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000030727   ⟸   ENSRNOT00000030813

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q67ES5-F1-model_v2 AlphaFold Q67ES5 1-309 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1596038 AgrOrtholog
BioCyc Gene G2FUF-42699 BioCyc
Ensembl Genes ENSRNOG00000021430 Ensembl, UniProtKB/Swiss-Prot
  ENSRNOG00055026702 UniProtKB/Swiss-Prot
  ENSRNOG00060019691 UniProtKB/Swiss-Prot
  ENSRNOG00065012061 UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000030813.3 UniProtKB/Swiss-Prot
  ENSRNOT00055046092 UniProtKB/Swiss-Prot
  ENSRNOT00060033979 UniProtKB/Swiss-Prot
  ENSRNOT00065019602 UniProtKB/Swiss-Prot
Gene3D-CATH Rhodopsin 7-helix transmembrane proteins UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro T2R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report rno:690472 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
NCBI Gene 690472 ENTREZGENE
PANTHER TASTE RECEPTOR TYPE 2 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
  TASTE RECEPTOR TYPE 2 MEMBER 124 UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam TAS2R UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen Tas2r124 PhenoGen
RatGTEx ENSRNOG00000021430 RatGTEx
  ENSRNOG00055026702 RatGTEx
  ENSRNOG00060019691 RatGTEx
  ENSRNOG00065012061 RatGTEx
Superfamily-SCOP Family A G protein-coupled receptor-like UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt A6IMB2 ENTREZGENE, UniProtKB/TrEMBL
  Q67ES5 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Tas2r124  taste receptor, type 2, member 124  LOC690472  similar to taste receptor, type 2, member 124  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC690472  similar to taste receptor, type 2, member 124  LOC684493  similar to taste receptor, type 2, member 124  Data merged from RGD:1590274 1643240 APPROVED
2006-11-20 LOC690472  similar to taste receptor, type 2, member 124      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC684493  similar to taste receptor, type 2, member 124      Symbol and Name status set to provisional 70820 PROVISIONAL