Rps24l1 (ribosomal protein S24 like 1) - Rat Genome Database

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Gene: Rps24l1 (ribosomal protein S24 like 1) Rattus norvegicus
Analyze
Symbol: Rps24l1
Name: ribosomal protein S24 like 1
RGD ID: 1596035
Description: ENCODES a protein that exhibits structural constituent of ribosome (inferred); INVOLVED IN translation (inferred); FOUND IN cytosolic ribosome (inferred); ribosomal subunit (inferred)
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S24-like; LOC690475; similar to ribosomal protein S24
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21206,293,099 - 206,293,621 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01225,655,320 - 225,655,715 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01232,607,834 - 232,608,277 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41212,084,456 - 212,084,857 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1203,794,578 - 203,794,973 (+)NCBICelera
Cytogenetic Map1q43NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Rps24l1
1 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9590084Insglur5Insulin/glucose ratio QTL 518.540.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)8124597739Rat
2317882Alcrsp24Alcohol response QTL 243.20.05response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)8125902202Rat
12880023Bw184Body weight QTL 1840.001body mass (VT:0001259)body weight (CMO:0000012)8209764047097640Rat
12880025Cm102Cardiac mass QTL 1020.044heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)8209764047097640Rat
12880028Cm103Cardiac mass QTL 1030.02heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)8209764047097640Rat
12880044Am9Aortic mass QTL 90.007aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)8209764047097640Rat
2317032Ginf2Gastrointestinal inflammation QTL 23.210.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)8470581049705810Rat
2317036Livw3Liver weight QTL 32.430.01liver mass (VT:0003402)liver weight to body weight ratio (CMO:0000633)8470581049705810Rat
2317048Ginf1Gastrointestinal inflammation QTL 13.520.005cecum mucosa thickness (VT:0010234)enterocolitis severity score (CMO:0002138)8470581049705810Rat
2301416Bp315Blood pressure QTL 3150.008arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)8767057852670578Rat
1354595Despr4Despair related QTL 42.160.0036locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)8768895552688955Rat
1354627Despr14Despair related QTL 140.0056locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)8768895552688955Rat
1581557Eae16Experimental allergic encephalomyelitis QTL 163.8nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)88462195110921472Rat
2317030Wbc5White blood cell count QTL 53.210.005leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)8873663553736635Rat
2317051Aia18Adjuvant induced arthritis QTL 182.42joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)8873663553736635Rat
1598824Memor4Memory QTL 42.5exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)8971222053356647Rat
1357398Slep3Serum leptin concentration QTL 33.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
2302367Slep5Serum leptin concentration QTL 53.43blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)8971246341866876Rat
631650Stl6Serum triglyceride level QTL 640.0019blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)810378157112202585Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039096531 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JACYVU010000046 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_039096531   ⟹   XP_038952459
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21206,293,099 - 206,293,621 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038952459 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_038952459   ⟸   XM_039096531
- UniProtKB: A0A0H2UHH9 (UniProtKB/TrEMBL)

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-56461 BioCyc
Ensembl Genes ENSRNOG00000010189 UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000013588 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000013588 UniProtKB/TrEMBL
Gene3D-CATH 3.30.70.3370 UniProtKB/TrEMBL
InterPro Ribosomal_L23/L15e_core_dom_sf UniProtKB/TrEMBL
  Ribosomal_S24e UniProtKB/TrEMBL
  Ribosomal_S24e_CS UniProtKB/TrEMBL
NCBI Gene 690475 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S24 UniProtKB/TrEMBL
  40S RIBOSOMAL PROTEIN S24 UniProtKB/TrEMBL
Pfam Ribosomal_S24e UniProtKB/TrEMBL
PhenoGen Rps24l1 PhenoGen
PROSITE RIBOSOMAL_S24E UniProtKB/TrEMBL
Superfamily-SCOP Ribosomal proteins S24e, L23 and L15e UniProtKB/TrEMBL
UniProt A0A0H2UHH9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps24l1  ribosomal protein S24 like 1  LOC690475  similar to ribosomal protein S24  Symbol and Name Changed 1299863 APPROVED
2006-11-20 LOC690475  similar to ribosomal protein S24      Symbol and Name status set to provisional 70820 PROVISIONAL