Spetex2el1 (Spetex-2E protein like 1) - Rat Genome Database

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Gene: Spetex2el1 (Spetex-2E protein like 1) Rattus norvegicus
Analyze
Symbol: Spetex2el1 (Ensembl: LOC100360856)
Name: Spetex-2E protein like 1 (Ensembl:hypothetical protein LOC100360856)
RGD ID: 1594784
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: disks large homolog 5-like; hypothetical protein LOC100360170; hypothetical protein LOC689268; LOC100360170; LOC108351879; LOC689268; uncharacterized LOC108351879; uncharacterized protein LOC689268
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,900,533 - 2,908,741 (+)NCBIGRCr8
mRatBN7.292,849,453 - 2,889,694 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl92,849,456 - 2,916,360 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01633,242 - 49,241 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

.
Variants in Spetex2el1
2092 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
631533Iresp3Immunoglobin response QTL316.2blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)927457995857951Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000050485   ⟹   ENSRNOP00000039060
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,849,465 - 2,886,722 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000072533   ⟹   ENSRNOP00000065132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,907,664 - 2,916,360 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000075578   ⟹   ENSRNOP00000067276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,849,456 - 2,916,360 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000079703   ⟹   ENSRNOP00000074663
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,881,694 - 2,884,702 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000095705   ⟹   ENSRNOP00000086580
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,881,694 - 2,890,145 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101947   ⟹   ENSRNOP00000084428
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl92,881,694 - 2,886,551 (-)Ensembl
RefSeq Acc Id: XM_039084366   ⟹   XP_038940294
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr892,900,533 - 2,908,741 (+)NCBI
mRatBN7.292,849,453 - 2,857,507 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038940294 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000084428.1
  ENSRNOP00000086580.1
RefSeq Acc Id: XP_038940294   ⟸   XM_039084366
Ensembl Acc Id: ENSRNOP00000065132   ⟸   ENSRNOT00000072533
Ensembl Acc Id: ENSRNOP00000067276   ⟸   ENSRNOT00000075578
Ensembl Acc Id: ENSRNOP00000086580   ⟸   ENSRNOT00000095705
Ensembl Acc Id: ENSRNOP00000084428   ⟸   ENSRNOT00000101947
Ensembl Acc Id: ENSRNOP00000074663   ⟸   ENSRNOT00000079703
Ensembl Acc Id: ENSRNOP00000039060   ⟸   ENSRNOT00000050485
Protein Domains
Disks large homolog 5 N-terminal

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28459 BioCyc
Ensembl Genes ENSRNOG00000047581 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000095705.1 UniProtKB/TrEMBL
  ENSRNOT00000101947.1 UniProtKB/TrEMBL
InterPro DLG5_N UniProtKB/TrEMBL
NCBI Gene 689268 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen Spetex2el1 PhenoGen
RatGTEx ENSRNOG00000047581 RatGTEx
UniProt A0A8I5ZZJ1_RAT UniProtKB/TrEMBL
  A0A8I6A2H0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Spetex2el1  Spetex-2E protein like 1  LOC689268  hypothetical protein LOC689268  Symbol and Name Changed 1299863 APPROVED
2021-03-09 LOC689268  hypothetical protein LOC689268  LOC108351879  uncharacterized LOC108351879  Data merged from RGD:11383607 737654 PROVISIONAL
2016-08-02 LOC108351879  uncharacterized LOC108351879      Symbol and Name status set to provisional 70820 PROVISIONAL
2015-07-29 LOC689268  hypothetical protein LOC689268  LOC100360170  hypothetical protein LOC100360170  Data merged from RGD:2322679 737654 PROVISIONAL
2010-05-06 LOC100360170  hypothetical protein LOC100360170      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC689268  hypothetical protein LOC689268      Symbol and Name status set to provisional 70820 PROVISIONAL