1700129C05Rikl (RIKEN cDNA 1700129C05 gene like) - Rat Genome Database

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Gene: 1700129C05Rikl (RIKEN cDNA 1700129C05 gene like) Rattus norvegicus
Analyze
No known orthologs.
Symbol: 1700129C05Rikl
Name: RIKEN cDNA 1700129C05 gene like
RGD ID: 1594625
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: hypothetical protein LOC691850; LOC691850; uncharacterized protein 1700129C05Rikl; uncharacterized protein LOC691850
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81537,379,422 - 37,386,455 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1537,384,902 - 37,386,555 (-)EnsemblGRCr8
mRatBN7.21533,263,618 - 33,270,933 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1533,269,389 - 33,270,920 (-)EnsemblmRatBN7.2
Rnor_6.01539,570,467 - 39,573,829 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1539,570,334 - 39,573,776 (-)Ensemblrn6Rnor6.0
Rnor_5.01543,387,750 - 43,391,134 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41538,239,513 - 38,242,324 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1532,949,261 - 32,952,122 (-)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse:




References

Genomics

Variants

.
Variants in 1700129C05Rikl
41 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
10755503Bp391Blood pressure QTL 3912.37arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)152024860037896129Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
9589149Insul29Insulin level QTL 299.060.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)15134723002Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
8552920Pigfal8Plasma insulin-like growth factor 1 level QTL 83blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)15134723002Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
8694361Abfw6Abdominal fat weight QTL 610.20.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)15134723002Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
631550Bw7Body weight QTL 73.6body mass (VT:0001259)body weight (CMO:0000012)151985656634924750Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
nervous system
reproductive system
respiratory system
2 3 1 5 3 4 2 1 2 9 3 5 24 2

Sequence


Ensembl Acc Id: ENSRNOT00000082517   ⟹   ENSRNOP00000072728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1537,384,902 - 37,386,555 (-)Ensembl
mRatBN7.2 Ensembl1533,269,389 - 33,270,920 (-)Ensembl
Rnor_6.0 Ensembl1539,570,334 - 39,573,776 (-)Ensembl
RefSeq Acc Id: XM_039093871   ⟹   XP_038949799
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,379,422 - 37,386,444 (-)NCBI
mRatBN7.21533,263,618 - 33,270,933 (-)NCBI
RefSeq Acc Id: XM_039093872   ⟹   XP_038949800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,379,422 - 37,386,413 (-)NCBI
mRatBN7.21533,263,632 - 33,270,928 (-)NCBI
RefSeq Acc Id: XM_039093873   ⟹   XP_038949801
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,379,422 - 37,386,455 (-)NCBI
mRatBN7.21533,263,705 - 33,270,924 (-)NCBI
RefSeq Acc Id: XM_039093874   ⟹   XP_038949802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,379,422 - 37,386,439 (-)NCBI
mRatBN7.21533,263,628 - 33,270,929 (-)NCBI
RefSeq Acc Id: XM_063274873   ⟹   XP_063130943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81537,383,197 - 37,386,435 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038949799 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949800 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949801 (Get FASTA)   NCBI Sequence Viewer  
  XP_038949802 (Get FASTA)   NCBI Sequence Viewer  
  XP_063130943 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000072728.2
Ensembl Acc Id: ENSRNOP00000072728   ⟸   ENSRNOT00000082517
RefSeq Acc Id: XP_038949799   ⟸   XM_039093871
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038949802   ⟸   XM_039093874
- Peptide Label: isoform X5
RefSeq Acc Id: XP_038949800   ⟸   XM_039093872
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038949801   ⟸   XM_039093873
- Peptide Label: isoform X4
RefSeq Acc Id: XP_063130943   ⟸   XM_063274873
- Peptide Label: isoform X2

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0G2K3Q0-F1-model_v2 AlphaFold A0A0G2K3Q0 1-222 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13699738
Promoter ID:EPDNEW_R10253
Type:initiation region
Name:LOC691850_1
Description:hypothetical protein LOC691850
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01539,573,768 - 39,573,828EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1594625 AgrOrtholog
BioCyc Gene G2FUF-13572 BioCyc
Ensembl Genes ENSRNOG00000053522 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000082517.2 UniProtKB/TrEMBL
NCBI Gene 691850 ENTREZGENE
PhenoGen 1700129C05Rikl PhenoGen
RatGTEx ENSRNOG00000053522 RatGTEx
UniProt A0A0G2K3Q0_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 1700129C05Rikl  RIKEN cDNA 1700129C05 gene like  LOC691850  hypothetical protein LOC691850  Symbol and Name Changed 1299863 APPROVED
2013-05-24 LOC691850  hypothetical protein LOC691850  LOC100364792  hypothetical protein LOC100364792  Data merged from RGD:2320373 1643240 APPROVED
2010-05-05 LOC100364792  hypothetical protein LOC100364792      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC691850  hypothetical protein LOC691850  LOC682578  hypothetical protein LOC682578  Data merged from RGD:1597899 1643240 APPROVED
2006-11-20 LOC691850  hypothetical protein LOC691850      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC682578  hypothetical protein LOC682578      Symbol and Name status set to provisional 70820 PROVISIONAL