Rps17-ps14 (ribosomal protein S17, pseudogene 14) - Rat Genome Database

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Gene: Rps17-ps14 (ribosomal protein S17, pseudogene 14) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps17-ps14
Name: ribosomal protein S17, pseudogene 14
RGD ID: 1593317
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytosolic ribosome. Predicted to be part of ribonucleoprotein complex. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 4. Orthologous to human RPS17 (ribosomal protein S17); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine.
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: 40S ribosomal protein S17-like; LOC691975; ribosomal protein S17-like; Rps17l; similar to 40S ribosomal protein S17
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Rps17  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81543,995,898 - 43,996,368 (+)NCBIGRCr8GRCr8GRCr8
mRatBN7.21539,820,303 - 39,820,773 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1539,820,330 - 39,820,737 (+)EnsemblmRatBN7.2
Rnor_6.01549,008,932 - 49,009,411 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01552,748,072 - 52,748,525 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41545,024,223 - 45,024,630 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1539,493,842 - 39,494,321 (+)NCBICelera
Cytogenetic Map15p12NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps17-ps14
1 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331729Rf42Renal function QTL 423.071kidney blood vessel physiology trait (VT:0100012)absolute change in renal blood flow rate (CMO:0001168)151736289773690657Rat
1641887Alcrsp14Alcohol response QTL 14response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)15142356671Rat
1582227Gluco30Glucose level QTL 303.60.0003blood glucose amount (VT:0000188)absolute change in blood glucose level area under curve (CMO:0002034)152803066582262678Rat
1582228Epfw3Epididymal fat weight QTL 34.10.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat
1578646Bmd18Bone mineral density QTL 185.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)152280624098288169Rat
1578647Bmd17Bone mineral density QTL 174femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)152280624098288169Rat
10401805Kidm51Kidney mass QTL 51kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1530632945306329Rat
2293686Bmd36Bone mineral density QTL 367.40.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)153361105871477291Rat
2317750Glom26Glomerulus QTL 264.3urine protein amount (VT:0005160)urine protein level (CMO:0000591)151249614165205939Rat
2298549Neuinf12Neuroinflammation QTL 123.5nervous system integrity trait (VT:0010566)spinal cord beta-2 microglobulin mRNA level (CMO:0002125)15155302115Rat
2293691Bmd37Bone mineral density QTL 376.60.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)153361105871477291Rat
2293688Bss29Bone structure and strength QTL 295.310.0001femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)151111114256111142Rat
1582214Stl21Serum triglyceride level QTL 213.10.022blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)152803066582262678Rat
631273Lecl2Lens clarity QTL 20.001lens clarity trait (VT:0001304)age of onset/diagnosis of cataract (CMO:0001584)151059608955596089Rat
2300167Bmd63Bone mineral density QTL 635.90.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
731170Pur3Proteinuria QTL 32.30.0005urine protein amount (VT:0005160)urine protein excretion rate (CMO:0000759)15141686771Rat
738017Hcas7Hepatocarcinoma susceptibility QTL 72.91liver integrity trait (VT:0010547)liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)15226636846921453Rat
152025253Hrtrt24Heart rate QTL 243.82heart pumping trait (VT:2000009)152788577486257085Rat
10054130Srcrt8Stress Responsive Cort QTL 82.180.0085blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)152211793367117933Rat
2300173Bmd62Bone mineral density QTL 6212.80.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)151111114256111142Rat
2324620Coatc3Coat color QTL 3coat/hair pigmentation trait (VT:0010463)pigmented coat/hair area to total coat/hair area ratio (CMO:0001810)151985656646187442Rat
61424Scl1Serum cholesterol level QTL 17.70.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)151672552880672115Rat
1582251Gluco24Glucose level QTL 243.20.0008blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)15553075650530756Rat
1598828Glom14Glomerulus QTL 142.5kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)153405413979054139Rat
1582242Gluco28Glucose level QTL 283.30.0008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)152803066582262678Rat
1578660Bss19Bone structure and strength QTL 194.3femur morphology trait (VT:0000559)bone trabecular cross-sectional area (CMO:0002311)152280624098288169Rat
1582244Bw79Body weight QTL 7940.0002epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)152803066582262678Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000036340   ⟹   ENSRNOP00000065827
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1539,820,330 - 39,820,737 (+)Ensembl
Rnor_6.0 Ensembl1549,008,958 - 49,009,365 (+)Ensembl
RefSeq Acc Id: XM_039093928   ⟹   XP_038949856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21539,819,498 - 39,820,783 (+)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000065827.1
RefSeq Acc Id: XP_038949856   ⟸   XM_039093928
Ensembl Acc Id: ENSRNOP00000065827   ⟸   ENSRNOT00000036340

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R8M8-F1-model_v2 AlphaFold M0R8M8 1-135 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1593317 AgrOrtholog
BioCyc Gene G2FUF-13353 BioCyc
Ensembl Genes ENSRNOG00000048585 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000036340.4 UniProtKB/TrEMBL
Gene3D-CATH 1.10.60.20 UniProtKB/TrEMBL
InterPro Ribosomal_S17e UniProtKB/TrEMBL
  RPS17e-like_sf UniProtKB/TrEMBL
NCBI Gene 691975 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S17 UniProtKB/TrEMBL
  PTHR10732 UniProtKB/TrEMBL
Pfam Ribosomal_S17e UniProtKB/TrEMBL
PhenoGen Rps17-ps14 PhenoGen
RatGTEx ENSRNOG00000048585 RatGTEx
Superfamily-SCOP SSF116820 UniProtKB/TrEMBL
UniProt M0R8M8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-14 Rps17-ps14  ribosomal protein S17, pseudogene 14  Rps17l  ribosomal protein S17-like  Name and Symbol changed 629549 APPROVED
2013-07-18 Rps17l  ribosomal protein S17-like  LOC691975  similar to 40S ribosomal protein S17  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC691975  similar to 40S ribosomal protein S17  LOC683552  similar to 40S ribosomal protein S17  Data merged from RGD:1585642 1643240 APPROVED
2006-11-20 LOC691975  similar to 40S ribosomal protein S17      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC683552  similar to 40S ribosomal protein S17      Symbol and Name status set to provisional 70820 PROVISIONAL