Cd2bp2-ps1 (Cd2 (cytoplasmic tail) binding protein 2, pseudogene 1) - Rat Genome Database

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Gene: Cd2bp2-ps1 (Cd2 (cytoplasmic tail) binding protein 2, pseudogene 1) Rattus norvegicus
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Symbol: Cd2bp2-ps1
Name: Cd2 (cytoplasmic tail) binding protein 2, pseudogene 1
RGD ID: 1593315
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC691977; similar to CD2 antigen (cytoplasmic tail) binding protein 2
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.26140,571,745 - 140,572,753 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.06147,533,081 - 147,534,017 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06156,442,544 - 156,443,480 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.46147,178,198 - 147,179,206 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera6138,214,800 - 138,215,736 (+)NCBICelera
Cytogenetic Map6q33NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

Genomics

Variants

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Variants in Cd2bp2-ps1
5 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731173Uae22Urinary albumin excretion QTL 2210.1urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
2290393Uae37Urinary albumin excretion QTL 370.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)665531555140994061Rat
8552796Vie3Viral induced encephalitis QTL 32.6brain integrity trait (VT:0010579)encephalitis incidence/prevalence measurement (CMO:0002361)696833997140994061Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6100364669140994061Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6105156861140994061Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6112636280140994061Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)6122549046140994061Rat

Markers in Region
RH126583  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21181,811,224 - 181,811,520 (+)MAPPERmRatBN7.2
mRatBN7.26140,572,589 - 140,572,799 (+)MAPPERmRatBN7.2
Rnor_6.06147,533,854 - 147,534,063NCBIRnor6.0
Rnor_6.01198,637,271 - 198,637,566NCBIRnor6.0
Rnor_5.06156,443,317 - 156,443,526UniSTSRnor5.0
Rnor_5.01205,631,002 - 205,631,297UniSTSRnor5.0
RGSC_v3.41186,453,241 - 186,453,536UniSTSRGSC3.4
RGSC_v3.46147,179,043 - 147,179,252UniSTSRGSC3.4
Celera6138,215,573 - 138,215,782UniSTS
Celera1179,462,907 - 179,463,202UniSTS
Cytogenetic Map6q33UniSTS
Cytogenetic Map1q36UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: XR_146061
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_5.06156,442,472 - 156,443,480 (+)NCBI
RefSeq Acc Id: XR_147049
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera6138,214,728 - 138,215,736 (+)NCBI

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-35449 BioCyc
NCBI Gene 691977 ENTREZGENE
PhenoGen Cd2bp2-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Cd2bp2-ps1  Cd2 (cytoplasmic tail) binding protein 2, pseudogene 1  LOC691977  similar to CD2 antigen (cytoplasmic tail) binding protein 2  Symbol and Name Changed 1299863 APPROVED
2008-01-09 LOC691977  similar to CD2 antigen (cytoplasmic tail) binding protein 2  LOC682622  similar to CD2 antigen (cytoplasmic tail) binding protein 2  Data merged from RGD:1596668 1643240 APPROVED
2006-11-20 LOC691977  similar to CD2 antigen (cytoplasmic tail) binding protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC682622  similar to CD2 antigen (cytoplasmic tail) binding protein 2      Symbol and Name status set to provisional 70820 PROVISIONAL