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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Slc39a7 | Rat | agammaglobulinemia 9 | | ISO | SLC39A7 (Homo sapiens) | 7240710 | | OMIM | | |
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Imported Disease Annotations - OMIMObject Symbol | Species | Term | Qualifier | Evidence | With | Reference | Notes | Source | Original Reference(s) | Slc39a7 | Rat | agammaglobulinemia 9 | | ISO | SLC39A7 (Homo sapiens) | 7240710 | | OMIM | | |
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# | Reference Title | Reference Citation |
1. | Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. | Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27. |
2. | GOA pipeline | RGD automated data pipeline |
3. | Data Import for Chemical-Gene Interactions | RGD automated import pipeline for gene-chemical interactions |
PMID:1300435 | PMID:10970097 | PMID:12477932 | PMID:28232492 | PMID:29307859 |
Slc39a7 (Rattus norvegicus - Norway rat) |
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SLC39A7 (Homo sapiens - human) |
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Slc39a7 (Mus musculus - house mouse) |
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Slc39a7 (Chinchilla lanigera - long-tailed chinchilla) |
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SLC39A7 (Pan paniscus - bonobo/pygmy chimpanzee) |
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SLC39A7 (Canis lupus familiaris - dog) |
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Slc39a7 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SLC39A7 (Sus scrofa - pig) |
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SLC39A7 (Chlorocebus sabaeus - green monkey) |
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Slc39a7 (Heterocephalus glaber - naked mole-rat) |
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Variants in Slc39a7
26 total Variants ![]() |
The detailed report is available here: | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer |
miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/). For more information about miRGate, see PMID:25858286 or access the full paper here. |
The following QTLs overlap with this region. | ![]() | Full Report | ![]() | CSV | ![]() | TAB | ![]() | Printer | ![]() | Gviewer |
RH129332 |
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BM385817 |
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Slc39a7 |
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alimentary part of gastrointestinal system
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appendage
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circulatory system
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ectoderm
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endocrine system
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endoderm
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exocrine system
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hemolymphoid system
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hepatobiliary system
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integumental system
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mesenchyme
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mesoderm
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musculoskeletal system
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nervous system
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renal system
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reproductive system
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respiratory system
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sensory system
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visual system
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16 | 12 | 67 | 165 | 91 | 90 | 59 | 92 | 59 | 6 | 356 | 192 | 11 | 144 | 81 | 92 | 31 | 17 | 17 |
RefSeq Transcripts | NM_001008885 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
NM_001164744 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
XM_063279021 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
GenBank Nucleotide | AC098547 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
BC079141 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
BX883042 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
CH473988 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
DY547565 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ212335 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
FQ212833 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles | |
JAXUCZ010000020 | (Get FASTA) | NCBI Sequence Viewer | Search GEO for Microarray Profiles |
Ensembl Acc Id: | ENSRNOT00000000541 ⟹ ENSRNOP00000000541 | ||||||||||||||||
Type: | CODING | ||||||||||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000077357 ⟹ ENSRNOP00000071707 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000083873 | ||||||||
Type: | CODING | ||||||||
Position: |
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Ensembl Acc Id: | ENSRNOT00000089622 | ||||||||
Type: | CODING | ||||||||
Position: |
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RefSeq Acc Id: | NM_001008885 ⟹ NP_001008885 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | NM_001164744 ⟹ NP_001158216 | ||||||||||||||||||||||||||||
RefSeq Status: | VALIDATED | ||||||||||||||||||||||||||||
Type: | CODING | ||||||||||||||||||||||||||||
Position: |
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Sequence: |
RefSeq Acc Id: | XM_063279021 ⟹ XP_063135091 | ||||||||
Type: | CODING | ||||||||
Position: |
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Protein RefSeqs | NP_001008885 | (Get FASTA) | NCBI Sequence Viewer |
NP_001158216 | (Get FASTA) | NCBI Sequence Viewer | |
XP_063135091 | (Get FASTA) | NCBI Sequence Viewer | |
GenBank Protein | AAH79141 | (Get FASTA) | NCBI Sequence Viewer |
CAE83932 | (Get FASTA) | NCBI Sequence Viewer | |
EDL96824 | (Get FASTA) | NCBI Sequence Viewer | |
Ensembl Protein | ENSRNOP00000000541 | ||
GenBank Protein | Q6MGB4 | (Get FASTA) | NCBI Sequence Viewer |
RefSeq Acc Id: | NP_001008885 ⟸ NM_001008885 |
- Peptide Label: | precursor |
- UniProtKB: | F7EQL7 (UniProtKB/Swiss-Prot), Q6MGB4 (UniProtKB/TrEMBL), A0A9M1WLR8 (UniProtKB/TrEMBL) |
- Sequence: |
RefSeq Acc Id: | NP_001158216 ⟸ NM_001164744 |
- Peptide Label: | precursor |
- UniProtKB: | F7EQL7 (UniProtKB/Swiss-Prot), Q6MGB4 (UniProtKB/TrEMBL), A0A9M1WLR8 (UniProtKB/TrEMBL) |
- Sequence: |
Ensembl Acc Id: | ENSRNOP00000000541 ⟸ ENSRNOT00000000541 |
Ensembl Acc Id: | ENSRNOP00000071707 ⟸ ENSRNOT00000077357 |
RefSeq Acc Id: | XP_063135091 ⟸ XM_063279021 |
- Peptide Label: | isoform X1 |
Name | Modeler | Protein Id | AA Range | Protein Structure |
AF-Q6MGB4-F1-model_v2 | AlphaFold | Q6MGB4 | 1-468 | view protein structure |
eQTL | View at Phenogen | |
WGCNA | View at Phenogen | |
Tissue/Strain Expression | View at Phenogen |
RGD ID: | 13701316 | ||||||||
Promoter ID: | EPDNEW_R11840 | ||||||||
Type: | initiation region | ||||||||
Name: | Slc39a7_1 | ||||||||
Description: | solute carrier family 39 member 7 | ||||||||
SO ACC ID: | SO:0000170 | ||||||||
Source: | EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/) | ||||||||
Experiment Methods: | Single-end sequencing. | ||||||||
Position: |
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Database | Acc Id | Source(s) |
AGR Gene | RGD:1593280 | AgrOrtholog |
BioCyc Gene | G2FUF-4542 | BioCyc |
Ensembl Genes | ENSRNOG00000000465 | Ensembl, ENTREZGENE |
Ensembl Transcript | ENSRNOT00000000541 | ENTREZGENE |
IMAGE_CLONE | IMAGE:7127902 | IMAGE-MGC_LOAD |
InterPro | ZIP | UniProtKB/Swiss-Prot |
KEGG Report | rno:294281 | UniProtKB/Swiss-Prot |
MGC_CLONE | MGC:94153 | IMAGE-MGC_LOAD |
NCBI Gene | 294281 | ENTREZGENE |
PANTHER | ZINC TRANSPORTER SLC39A7 | UniProtKB/Swiss-Prot |
ZINC TRANSPORTER SLC39A7 HISTIDINE-RICH MEMBRANE PROTEIN KE4 | UniProtKB/Swiss-Prot | |
Pfam | Zip | UniProtKB/Swiss-Prot |
PhenoGen | Slc39a7 | PhenoGen |
RatGTEx | ENSRNOG00000000465 | RatGTEx |
UniProt | A0A9M1WLR8 | ENTREZGENE, UniProtKB/TrEMBL |
F7EQL7 | ENTREZGENE | |
Q6MGB4 | ENTREZGENE, UniProtKB/Swiss-Prot | |
UniProt Secondary | F7EQL7 | UniProtKB/Swiss-Prot |
Date | Current Symbol | Current Name | Previous Symbol | Previous Name | Description | Reference | Status |
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2016-02-24 | Slc39a7 | solute carrier family 39 member 7 | Slc39a7 | solute carrier family 39 (zinc transporter), member 7 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2008-03-07 | Slc39a7 | solute carrier family 39 (zinc transporter), member 7 | RT1-Ke4 | RT1 class I, locus Ke4 | Nomenclature updated to reflect human and mouse nomenclature | 1299863 | APPROVED |
2007-04-12 | RT1-Ke4 | RT1 class I, locus Ke4 | RT1-Ke4_mapped | RT1 class I, locus Ke4 (mapped) | Data merged from RGD:3490 | 737654 | APPROVED |
2006-11-20 | RT1-Ke4_mapped | RT1 class I, locus Ke4(mapped) | RT1-Ke4 | RT1 class I, locus Ke4 | Symbol set to symbol_mapped, name set to name (mapped) | 1582166 | APPROVED |
2006-11-20 | RT1-Ke4 | RT1 class I, locus Ke4 | Symbol and Name status set to provisional | 70820 | PROVISIONAL | ||
2004-02-11 | RT1-Ke4 | RT1 class I, locus Ke4 | Rt1Ke4 | RT1 region expressed gene KE4 | Symbol and Name updated | 625702 | APPROVED |
2003-04-09 | Rt1Ke4 | RT1 region expressed gene KE4 | RT1-Ke4 | Histidine-rich membrane protein | Symbol and Name updated | 629477 | APPROVED |
2002-06-10 | RT1-Ke4 | Histidine-rich membrane protein | Symbol and Name status set to approved | 70586 | APPROVED |