Vom2r-ps141 (vomeronasal 2 receptor, pseudogene 141) - Rat Genome Database

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Gene: Vom2r-ps141 (vomeronasal 2 receptor, pseudogene 141) Rattus norvegicus
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Symbol: Vom2r-ps141
Name: vomeronasal 2 receptor, pseudogene 141
RGD ID: 1592341
Description:
Type: pseudo
RefSeq Status: INFERRED
Previously known as: LOC689419; similar to vomeronasal 2, receptor, 4
Related Functional Gene: Vom2r64  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr892,684,658 - 2,685,557 (-)NCBIGRCr8
mRatBN7.292,597,703 - 2,598,602 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.099,163,743 - 9,164,642 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.098,167,912 - 8,168,811 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera95,943,523 - 5,944,422 (+)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
Additional References at PubMed
PMID:17382427  


Genomics

Variants

.
Variants in Vom2r-ps141
8 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts NG_006640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-28473 BioCyc
NCBI Gene 689419 ENTREZGENE
PhenoGen Vom2r-ps141 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Vom2r-ps141  vomeronasal 2 receptor, pseudogene 141  LOC681880  similar to vomeronasal 2, receptor, 4  Data merged from RGD:1590486 1643240 APPROVED
2008-07-23 Vom2r-ps141  vomeronasal 2 receptor, pseudogene 141  LOC689419  similar to vomeronasal 2, receptor, 4  Symbol and Name updated 1299863 APPROVED
2006-11-20 LOC689419  similar to vomeronasal 2, receptor, 4      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC681880  similar to vomeronasal 2, receptor, 4      Symbol and Name status set to provisional 70820 PROVISIONAL