Garem1 (GRB2 associated regulator of MAPK1 subtype 1) - Rat Genome Database

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Pathways
Gene: Garem1 (GRB2 associated regulator of MAPK1 subtype 1) Rattus norvegicus
Analyze
Symbol: Garem1
Name: GRB2 associated regulator of MAPK1 subtype 1
RGD ID: 1591842
Description: Predicted to enable proline-rich region binding activity. Predicted to be involved in several processes, including cellular response to epidermal growth factor stimulus; epidermal growth factor receptor signaling pathway; and positive regulation of ERK1 and ERK2 cascade. Orthologous to human GAREM1 (GRB2 associated regulator of MAPK1 subtype 1); INTERACTS WITH amphetamine; bisphenol A; tetrachloromethane.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: Garem; GRB2 associated regulator of MAPK1, member 1; GRB2 associated, regulator of MAPK1; GRB2-associated and regulator of MAPK protein 1; GRB2-associated and regulator of MAPK protein-like; LOC498827; LOC679154; RGD1562080; similar to DNA-directed RNA polymerase II largest subunit (RPB1); similar to Hypothetical protein CBG10141
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21812,420,169 - 12,585,323 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1812,423,882 - 12,585,345 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01814,982,604 - 15,007,245 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1812,224,514 - 12,284,188 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1812,224,514 - 12,284,188 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01814,769,102 - 14,791,523 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41812,944,256 - 12,946,270 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1812,415,517 - 12,519,188 (-)NCBICelera
Cytogenetic Map18p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:19509291   PMID:24003223  


Genomics

Comparative Map Data
Garem1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.21812,420,169 - 12,585,323 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1812,423,882 - 12,585,345 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01814,982,604 - 15,007,245 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1812,224,514 - 12,284,188 (-)NCBIRnor6.0rn6Rnor6.0
Rnor_6.0 Ensembl1812,224,514 - 12,284,188 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01814,769,102 - 14,791,523 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41812,944,256 - 12,946,270 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1812,415,517 - 12,519,188 (-)NCBICelera
Cytogenetic Map18p12NCBI
GAREM1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381832,263,522 - 32,470,882 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1832,124,877 - 32,470,882 (-)EnsemblGRCh38hg38GRCh38
GRCh371829,843,485 - 30,050,845 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361828,101,461 - 28,304,445 (-)NCBINCBI36Build 36hg18NCBI36
Build 341828,101,474 - 28,304,445NCBI
Celera1826,654,417 - 26,857,408 (-)NCBICelera
Cytogenetic Map18q12.1NCBI
HuRef1826,700,077 - 26,907,135 (-)NCBIHuRef
CHM1_11829,770,990 - 29,977,911 (-)NCBICHM1_1
T2T-CHM13v2.01832,453,815 - 32,661,186 (-)NCBIT2T-CHM13v2.0
Garem1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391821,260,399 - 21,433,196 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1821,260,258 - 21,433,195 (-)EnsemblGRCm39 Ensembl
GRCm381821,127,342 - 21,300,139 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1821,127,201 - 21,300,138 (-)EnsemblGRCm38mm10GRCm38
MGSCv371821,285,843 - 21,458,640 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361821,270,211 - 21,443,148 (-)NCBIMGSCv36mm8
Celera1821,623,035 - 21,796,413 (-)NCBICelera
Cytogenetic Map18A2NCBI
cM Map1811.87NCBI
Garem1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540219,469,649 - 19,663,654 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540219,469,652 - 19,663,654 (-)NCBIChiLan1.0ChiLan1.0
GAREM1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan11835,332,057 - 35,540,119 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01825,470,702 - 25,678,146 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11829,065,053 - 29,272,225 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1829,065,053 - 29,272,231 (-)Ensemblpanpan1.1panPan2
GAREM1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1757,158,005 - 57,423,643 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl757,295,070 - 57,419,252 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha756,654,442 - 56,856,713 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0757,196,399 - 57,404,576 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl757,195,979 - 57,400,589 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1756,881,075 - 57,082,118 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0756,898,894 - 57,100,606 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0757,195,790 - 57,397,330 (+)NCBIUU_Cfam_GSD_1.0
Garem1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494452,926,545 - 53,066,880 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936682947,487 - 1,068,482 (+)EnsemblSpeTri2.0
SpeTri2.0NW_004936682947,420 - 1,068,468 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GAREM1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6116,100,372 - 116,325,133 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16116,100,371 - 116,324,853 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26108,838,673 - 109,028,414 (-)NCBISscrofa10.2Sscrofa10.2susScr3
GAREM1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11848,287,589 - 48,483,135 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1848,287,579 - 48,483,552 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605022,837,054 - 23,033,716 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Garem1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_004624770500,641 - 728,014 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_004624770501,113 - 727,736 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Garem1
947 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
12904690Cm129Cardiac mass QTL 1290.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)181194427326548295Rat
12904689Cm128Cardiac mass QTL 1280.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)181194427326548295Rat
12904693Am20Aortic mass QTL 200.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)181194427326548295Rat
12904695Kidm73Kidney mass QTL 730.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)181194427326548295Rat
12904691Cm130Cardiac mass QTL 1300.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)181194427326548295Rat
12904680Bw189Body weight QTL 1890.019body mass (VT:0001259)body weight (CMO:0000012)181194427326548295Rat
2301410Bp317Blood pressure QTL 3170.004arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194427326548295Rat
1331781Scl28Serum cholesterol level QTL 283.995blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)181194429924797117Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
70178EaezExperimental allergic encephalomyelitis QTL z2.4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)181235778612874620Rat

Markers in Region
AU047296  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21812,454,210 - 12,454,409 (-)MAPPERmRatBN7.2
Rnor_6.01814,992,080 - 14,992,278NCBIRnor6.0
Rnor_5.01814,776,706 - 14,776,904UniSTSRnor5.0
Celera1812,445,611 - 12,445,809UniSTS
WI-14403  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21812,423,905 - 12,424,053 (-)MAPPERmRatBN7.2
Rnor_6.01815,032,610 - 15,032,757NCBIRnor6.0
Rnor_5.01814,816,887 - 14,817,034UniSTSRnor5.0
Celera1812,415,280 - 12,415,427UniSTS
AU049676  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21812,442,334 - 12,442,576 (-)MAPPERmRatBN7.2
Rnor_6.01815,007,872 - 15,008,113NCBIRnor6.0
Rnor_6.01815,014,688 - 15,014,929NCBIRnor6.0
Rnor_5.01814,799,314 - 14,799,555UniSTSRnor5.0
Rnor_5.01814,792,498 - 14,792,739UniSTSRnor5.0
Celera1812,433,735 - 12,433,976UniSTS


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000083236
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1812,224,514 - 12,284,188 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095044   ⟹   ENSRNOP00000089678
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1812,423,882 - 12,549,791 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000100631   ⟹   ENSRNOP00000087833
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1812,423,882 - 12,585,345 (-)Ensembl
RefSeq Acc Id: XM_039097346   ⟹   XP_038953274
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.21812,420,169 - 12,585,323 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038953274 (Get FASTA)   NCBI Sequence Viewer  
RefSeq Acc Id: XP_038953274   ⟸   XM_039097346
- UniProtKB: A0A8I6AHF4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000087833   ⟸   ENSRNOT00000100631
RefSeq Acc Id: ENSRNOP00000089678   ⟸   ENSRNOT00000095044
Protein Domains
CABIT

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591842 AgrOrtholog
BioCyc Gene G2FUF-8203 BioCyc
Ensembl Genes ENSRNOG00000060341 Ensembl
  ENSRNOG00000062552 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000087833 ENTREZGENE
  ENSRNOP00000087833.1 UniProtKB/TrEMBL
  ENSRNOP00000089678.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000095044.1 UniProtKB/TrEMBL
  ENSRNOT00000100631 ENTREZGENE
  ENSRNOT00000100631.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.150.50 UniProtKB/TrEMBL
InterPro CABIT_dom UniProtKB/TrEMBL
  SAM/pointed_sf UniProtKB/TrEMBL
NCBI Gene 679154 ENTREZGENE
PANTHER GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN 1 UniProtKB/TrEMBL
  GRB2-ASSOCIATED AND REGULATOR OF MAPK PROTEIN FAMILY MEMBER UniProtKB/TrEMBL
Pfam CABIT UniProtKB/TrEMBL
PhenoGen Garem1 PhenoGen
Superfamily-SCOP SSF47769 UniProtKB/TrEMBL
UniProt A0A8I6AC94_RAT UniProtKB/TrEMBL
  A0A8I6AHF4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Garem1  GRB2 associated regulator of MAPK1 subtype 1  Garem1  GRB2 associated regulator of MAPK1 subtype 1  Data Merged 737654 PROVISIONAL
2021-08-09 Garem1  GRB2 associated regulator of MAPK1 subtype 1      Symbol and Name status set to provisional 45752 PROVISIONAL
2021-03-09 Garem1  GRB2 associated regulator of MAPK1 subtype 1  RGD1562080  similar to Hypothetical protein CBG10141  Data Merged 737654 PROVISIONAL
2016-11-14 Garem1  GRB2 associated regulator of MAPK1 subtype 1  Garem1  GRB2 associated regulator of MAPK1, member 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-12 Garem1  GRB2 associated regulator of MAPK1, member 1  Garem  GRB2 associated, regulator of MAPK1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-08-09 Garem  GRB2 associated, regulator of MAPK1  LOC679154  similar to DNA-directed RNA polymerase II largest subunit (RPB1)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562080  similar to Hypothetical protein CBG10141   RGD1562080_predicted  similar to Hypothetical protein CBG10141 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC679154  similar to DNA-directed RNA polymerase II largest subunit (RPB1)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1562080_predicted  similar to Hypothetical protein CBG10141 (predicted)  LOC498827  similar to Hypothetical protein CBG10141  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498827  similar to Hypothetical protein CBG10141      Symbol and Name status set to provisional 70820 PROVISIONAL