Girdinl1 (girders of actin filaments like 1) - Rat Genome Database

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Gene: Girdinl1 (girders of actin filaments like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Girdinl1 (Ensembl: LOC102557419)
Name: girders of actin filaments like 1 (Ensembl:disks large homolog 5-like)
RGD ID: 1591345
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: AABR07066379.1; disks large homolog 5-like; girdin; hypothetical LOC363380; hypothetical protein LOC100360874; hypothetical protein LOC685668; hypothetical protein LOC689498; inactive phospholipase C-like protein 2; LOC100360874; LOC100912904; LOC363380; LOC363434; LOC685668; LOC688772; LOC689498; LOC690748; LOC691451; LOC691487; LOC691491; LOC691672; similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg); similar to similar to RIKEN cDNA 1700001E04; similar to similar to RIKEN cDNA 2610042L04; uncharacterized protein Girdinl1; uncharacterized protein LOC100912904; uncharacterized protein LOC685668
RGD Orthologs
Alliance Genes
More Info homologs ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8918,162,530 - 18,181,711 (+)NCBIGRCr8
mRatBN7.2910,664,770 - 10,683,943 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl910,664,752 - 10,683,939 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.0912,341,940 - 12,352,007 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl98,349,033 - 8,442,298 (+)NCBIRnor6.0rn6Rnor6.0
RGSC_v3.41449,551,381 - 49,573,901 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Cytogenetic Map9q12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Girdinl1
1140 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat
1578675Bss17Bone structure and strength QTL 173.8femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)9336865213533896Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9510982642921101Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9510982650109826Rat
11353947Bp392Blood pressure QTL 392arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)9728325252283252Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)9795472022071169Rat
9589133Insul26Insulin level QTL 2617.960.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)9895256053952560Rat
7411609Foco16Food consumption QTL 1625.60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9895256053952560Rat


Expression


Sequence


RefSeq Acc Id: ENSRNOT00000092165   ⟹   ENSRNOP00000073282
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl910,678,449 - 10,683,939 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000108760   ⟹   ENSRNOP00000092029
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl910,664,752 - 10,683,939 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110760   ⟹   ENSRNOP00000077684
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl910,675,024 - 10,683,939 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114218   ⟹   ENSRNOP00000094056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl910,678,307 - 10,683,939 (+)Ensembl
RefSeq Acc Id: XM_039084435   ⟹   XP_038940363
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8918,162,534 - 18,181,711 (+)NCBI
mRatBN7.2910,664,819 - 10,683,943 (+)NCBI
RefSeq Acc Id: XM_039084438   ⟹   XP_038940366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8918,172,789 - 18,181,711 (+)NCBI
mRatBN7.2910,675,164 - 10,683,943 (+)NCBI
RefSeq Acc Id: XM_063268106   ⟹   XP_063124176
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8918,176,090 - 18,181,711 (+)NCBI
RefSeq Acc Id: XM_063268107   ⟹   XP_063124177
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8918,162,530 - 18,181,711 (+)NCBI
RefSeq Acc Id: XM_063268108   ⟹   XP_063124178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8918,162,788 - 18,181,711 (+)NCBI
RefSeq Acc Id: XP_038940363   ⟸   XM_039084435
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AH18 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940366   ⟸   XM_039084438
- Peptide Label: isoform X4
- UniProtKB: A0A8I5Y7T4 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000094056   ⟸   ENSRNOT00000114218
RefSeq Acc Id: ENSRNOP00000092029   ⟸   ENSRNOT00000108760
RefSeq Acc Id: ENSRNOP00000073282   ⟸   ENSRNOT00000092165
RefSeq Acc Id: ENSRNOP00000077684   ⟸   ENSRNOT00000110760
RefSeq Acc Id: XP_063124177   ⟸   XM_063268107
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063124178   ⟸   XM_063268108
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063124176   ⟸   XM_063268106
- Peptide Label: isoform X2
Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591345 AgrOrtholog
BioCyc Gene G2FUF-28348 BioCyc
Ensembl Genes ENSRNOG00000048686 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000108760.1 UniProtKB/TrEMBL
  ENSRNOT00000110760.1 UniProtKB/TrEMBL
  ENSRNOT00000114218.1 UniProtKB/TrEMBL
InterPro DUF622 UniProtKB/TrEMBL
NCBI Gene 685668 ENTREZGENE
PANTHER 2610042L04RIK PROTEIN-RELATED UniProtKB/TrEMBL
  SPEER/SPETEX UniProtKB/TrEMBL
Pfam Takusan UniProtKB/TrEMBL
PhenoGen Girdinl1 PhenoGen
RatGTEx ENSRNOG00000048686 RatGTEx
UniProt A0A8I5Y7T4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AH18 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ALB7_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Girdinl1  girders of actin filaments like 1  LOC685668  hypothetical protein LOC685668  Symbol and Name Changed 1299863 APPROVED
2022-06-02 LOC685668  hypothetical protein LOC685668  AABR07066379.1    Data merged from RGD:15005582 737654 PROVISIONAL
2021-03-09 LOC685668  hypothetical protein LOC685668  LOC100912904  disks large homolog 5-like  Data merged from RGD:6485132 737654 PROVISIONAL
2019-11-08 AABR07066379.1        Symbol and Name status set to provisional 45752 PROVISIONAL
2015-07-29 LOC685668  hypothetical protein LOC685668  LOC100360874  hypothetical protein LOC100360874  Data merged from RGD:2321284 737654 PROVISIONAL
2015-07-29 LOC685668  hypothetical protein LOC685668  LOC691487  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)  Data merged from RGD:1583886 737654 PROVISIONAL
2015-07-29 LOC685668  hypothetical protein LOC685668  LOC691672  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)  Data merged from RGD:1597222 737654 PROVISIONAL
2015-07-29 LOC685668  hypothetical protein LOC685668  LOC691491  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)  Data merged from RGD:1583882 737654 PROVISIONAL
2015-07-29 LOC685668  hypothetical protein LOC685668  LOC691451  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)  Data merged from RGD:1583922 737654 PROVISIONAL
2015-07-29 LOC685668  hypothetical protein LOC685668  LOC690748  similar to similar to RIKEN cDNA 1700001E04  Data merged from RGD:1592216 737654 PROVISIONAL
2015-07-29 LOC685668  hypothetical protein LOC685668  LOC689498  hypothetical protein LOC689498  Data merged from RGD:1592264 737654 PROVISIONAL
2015-07-29 LOC685668  hypothetical protein LOC685668  LOC688772  similar to similar to RIKEN cDNA 2610042L04  Data merged from RGD:1585236 737654 PROVISIONAL
2015-07-29 LOC685668  hypothetical protein LOC685668  LOC363434  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)  Data merged from RGD:1589726 737654 PROVISIONAL
2015-07-29 LOC685668  hypothetical protein LOC685668  LOC363380  hypothetical LOC363380  Data merged from RGD:1590857 737654 PROVISIONAL
2012-07-05 LOC100912904  disks large homolog 5-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2010-05-05 LOC100360874  hypothetical protein LOC100360874      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC691672  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC689498  hypothetical protein LOC689498      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC690748  similar to similar to RIKEN cDNA 1700001E04      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC685668  hypothetical protein LOC685668      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC363380  hypothetical LOC363380      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC363434  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC688772  similar to similar to RIKEN cDNA 2610042L04      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691451  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691487  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC691491  similar to Discs large homolog 5 (Placenta and prostate DLG) (Discs large protein P-dlg)      Symbol and Name status set to provisional 70820 PROVISIONAL