C5h1orf185 (similar to human chromosome 1 open reading frame 185) - Rat Genome Database

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Gene: C5h1orf185 (similar to human chromosome 1 open reading frame 185) Rattus norvegicus
Analyze
Symbol: C5h1orf185 (Ensembl: LOC689589)
Name: similar to human chromosome 1 open reading frame 185 (Ensembl:hypothetical protein LOC689589)
RGD ID: 1591038
Description: Orthologous to human C1orf185 (chromosome 1 open reading frame 185); INTERACTS WITH bisphenol A; benzo[a]pyrene (ortholog); fulvestrant (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC689589; LOC689589; rCG50434-like; uncharacterized protein C1orf185 homolog; uncharacterized protein LOC689589
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85129,504,609 - 129,524,506 (-)NCBIGRCr8
mRatBN7.25124,276,074 - 124,295,881 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5124,276,074 - 124,295,803 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5126,889,462 - 126,909,555 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05128,612,521 - 128,632,625 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05128,663,807 - 128,683,905 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05129,154,544 - 129,175,596 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5129,154,445 - 129,175,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05132,993,292 - 133,008,003 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45130,874,390 - 130,895,936 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5123,017,963 - 123,036,843 (-)NCBICelera
Cytogenetic Map5q35NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:15632090  


Genomics

Comparative Map Data
C5h1orf185
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr85129,504,609 - 129,524,506 (-)NCBIGRCr8
mRatBN7.25124,276,074 - 124,295,881 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl5124,276,074 - 124,295,803 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx5126,889,462 - 126,909,555 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.05128,612,521 - 128,632,625 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.05128,663,807 - 128,683,905 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.05129,154,544 - 129,175,596 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl5129,154,445 - 129,175,597 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.05132,993,292 - 133,008,003 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.45130,874,390 - 130,895,936 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera5123,017,963 - 123,036,843 (-)NCBICelera
Cytogenetic Map5q35NCBI
C1orf185
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38151,102,228 - 51,152,282 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl151,102,221 - 51,148,086 (+)EnsemblGRCh38hg38GRCh38
GRCh37151,567,900 - 51,613,758 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36151,340,494 - 51,386,342 (+)NCBINCBI36Build 36hg18NCBI36
Celera149,854,427 - 49,900,283 (+)NCBICelera
Cytogenetic Map1p32.3NCBI
HuRef149,685,683 - 49,731,549 (+)NCBIHuRef
CHM1_1151,685,466 - 51,731,313 (+)NCBICHM1_1
T2T-CHM13v2.0150,982,117 - 51,032,181 (+)NCBIT2T-CHM13v2.0
4930522H14Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm394109,362,529 - 109,388,494 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl4109,362,534 - 109,388,494 (-)EnsemblGRCm39 Ensembl
GRCm384109,505,332 - 109,531,297 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl4109,505,337 - 109,531,297 (-)EnsemblGRCm38mm10GRCm38
MGSCv374109,177,980 - 109,203,902 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv364109,003,307 - 109,029,229 (-)NCBIMGSCv36mm8
Celera4107,845,441 - 107,871,387 (-)NCBICelera
Cytogenetic Map4C7NCBI
cM Map451.29NCBI
CUNH1orf185
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554647,856,818 - 7,936,820 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554647,858,273 - 7,894,407 (-)NCBIChiLan1.0ChiLan1.0
C1H1orf185
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21175,707,623 - 175,762,389 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11174,848,180 - 174,902,947 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0150,349,126 - 50,394,971 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1151,844,666 - 51,890,503 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl151,844,666 - 51,890,499 (+)Ensemblpanpan1.1panPan2
C15H1orf185
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11510,052,740 - 10,086,117 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1510,053,065 - 10,217,018 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1510,204,311 - 10,237,689 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.01510,184,770 - 10,217,935 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1510,185,095 - 10,207,748 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1159,989,940 - 10,023,278 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01510,078,670 - 10,111,847 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01510,095,726 - 10,128,919 (-)NCBIUU_Cfam_GSD_1.0
CUNH1orf185
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440505865,734,448 - 65,775,478 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365229,641,147 - 9,672,679 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365229,641,147 - 9,681,843 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C6H1orf185
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.16160,985,550 - 161,098,997 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
CUNH1orf185
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12081,806,741 - 81,841,411 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2081,806,889 - 81,833,155 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603335,393,439 - 35,430,613 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH1orf185
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_0046248591,931,595 - 1,944,883 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in C5h1orf185
148 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:102
Count of miRNA genes:80
Interacting mature miRNAs:84
Transcripts:ENSRNOT00000012112
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
70212Niddm25Non-insulin dependent diabetes mellitus QTL 253.54blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)51131345958Rat
1576314Eutr1Estrogen induced uterine response QTL 1uterus integrity trait (VT:0010575)pyometritis severity score (CMO:0002009)52138965166875058Rat
2290448Scl54Serum cholesterol level QTL 542.93blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)531663789131345958Rat
1641912Alcrsp18Alcohol response QTL 18response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)535189153141643988Rat
1549845Scl44Serum cholesterol level QTL 446blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)540128307148607290Rat
1331801Rf33Renal function QTL 334.149kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)543726656129132602Rat
1578766Tcas11Tongue tumor susceptibility QTL 114.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)546711509161317411Rat
1576312Emca8Estrogen-induced mammary cancer QTL 84.1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)550328551141643988Rat
70189Mcs5Mammary carcinoma susceptibility QTL 510.51mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)555805606132207589Rat
1358895Bp254Blood pressure QTL 2543.60.0003arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)558829236128034027Rat
61426Scl2Serum cholesterol level QTL 27.30.001blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)559793399143070159Rat
61393Bp7Blood pressure QTL 74.50.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)560293434161481680Rat
1354598Srn6Serum renin concentration QTL 63.8blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)569540295151018848Rat
1298070Scl18Serum cholesterol level QTL 183.7blood LDL cholesterol amount (VT:0000181)calculated plasma low density lipoprotein cholesterol level (CMO:0001245)579584860124584860Rat
1598846Bp293Blood pressure QTL 2933.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)579584860124584860Rat
1598859Cm66Cardiac mass QTL 662heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)579584860124584860Rat
1302790Scl20Serum cholesterol level QTL 206.40.0001blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)582394392166664054Rat
1298086Bp156Blood pressure QTL 156arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)584132602129132602Rat
7411601Foco12Food consumption QTL 1219.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
7411564Bw135Body weight QTL 1350.001body mass (VT:0001259)body weight gain (CMO:0000420)587468046132468046Rat
7411582Foco3Food consumption QTL 37.50.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)587468046132468046Rat
6903316Bw113Body weight QTL 11320.0103body mass (VT:0001259)body weight (CMO:0000012)587765973132765973Rat
1358889Bp261Blood pressure QTL 2612.86arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)590067849128034027Rat
1358909Kidm25Kidney mass QTL 251.87kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)590067849128034027Rat
631527Tls1T-lymphoma susceptibility QTL 100.001thymus integrity trait (VT:0010555)post-insult time to onset of T-cell lymphoma (CMO:0001907)590450144135450144Rat
61452Ciaa5CIA Autoantibody QTL 53.5blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)594858972143070159Rat
1331796Thshl2Thyroid stimulating hormone level QTL 22.3blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)597059760147465714Rat
2317753Glom24Glomerulus QTL 243.1kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)597570330136479578Rat
1358187Emca1Estrogen-induced mammary cancer QTL 14.4mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)599216724148607142Rat
1578673Bmd13Bone mineral density QTL 134.9femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)5103689353148689353Rat
2317056Wbc3White blood cell count QTL 32.510.01leukocyte quantity (VT:0000217)white blood cell count (CMO:0000027)5105999803150999803Rat
7207488Bss110Bone structure and strength QTL 18.4femur strength trait (VT:0010010)femur stiffness (CMO:0001674)5106906205151906205Rat
7207491Bss112Bone structure and strength QTL 1127femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)5106906205151906205Rat
7207481Bss106Bone structure and strength QTL 1067.9femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5106906205151906205Rat
7207486Bss109Bone structure and strength QTL 109femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)5106906205151906205Rat
1549838Bss4Bone structure and strength QTL 49.2femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)5106906205151906205Rat
1298089Scl14Serum cholesterol level QTL 145.80.0004blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)5108845856153845856Rat
1598847Cm62Cardiac mass QTL 623.4heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)5108845856153845856Rat
8657050Bw146Body weight QTL 14619.840.001body mass (VT:0001259)body weight gain (CMO:0000420)5108938288153938288Rat
8694441Bw169Body weight QTL 16917.610.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)5111416838156416838Rat
8694198Abfw3Abdominal fat weight QTL 316.130.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)5111416838156416838Rat
8694389Bw160Body weight QTL 1606.170.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)5111416838156416838Rat
8552960Pigfal15Plasma insulin-like growth factor 1 level QTL 15blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)5111416838156416838Rat
7794739Bp372Blood pressure QTL 3720.0058arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)5117913688125222967Rat
1582230Bw78Body weight QTL 783.20.0016epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)5119085612128034027Rat
1581510Cm54Cardiac mass QTL 543.40.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)5120740824143608494Rat
2293642Bss37Bone structure and strength QTL 374.640.0001femur strength trait (VT:0010010)femur ultimate force (CMO:0001675)5120740824151018848Rat
1641920Colcs1Colorectal carcinoma susceptibility QTL 12.990.0055intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)5121846814166846814Rat
7394710Emca12Estrogen-induced mammary cancer QTL 12mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)5124160767133749643Rat

Markers in Region
D5Got43  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25124,299,554 - 124,299,701 (+)MAPPERmRatBN7.2
Rnor_6.05129,178,878 - 129,179,022NCBIRnor6.0
Rnor_5.05133,016,453 - 133,016,597UniSTSRnor5.0
RGSC_v3.45130,898,141 - 130,898,285UniSTSRGSC3.4
RGSC_v3.45130,898,140 - 130,898,285RGDRGSC3.4
RGSC_v3.15130,903,367 - 130,903,511RGD
RH 3.4 Map5814.0UniSTS
RH 3.4 Map5814.0RGD
Cytogenetic Map5q35UniSTS
AW529438  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.25124,276,148 - 124,276,300 (+)MAPPERmRatBN7.2
Rnor_6.05129,154,619 - 129,154,770NCBIRnor6.0
Rnor_5.05132,993,367 - 132,993,518UniSTSRnor5.0
RGSC_v3.45130,874,465 - 130,874,616UniSTSRGSC3.4
Celera5123,018,038 - 123,018,189UniSTS
RH 3.4 Map5814.1UniSTS
Cytogenetic Map5q35UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 7
Low 1 1
Below cutoff 1 6 2 7 2 4 5 1 2 1 1 4

Sequence


RefSeq Acc Id: ENSRNOT00000012112   ⟹   ENSRNOP00000012112
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl5124,276,074 - 124,295,803 (-)Ensembl
Rnor_6.0 Ensembl5129,154,544 - 129,175,597 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000083096   ⟹   ENSRNOP00000074430
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl5129,154,445 - 129,174,913 (-)Ensembl
RefSeq Acc Id: NM_001271399   ⟹   NP_001258328
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85129,504,701 - 129,524,461 (-)NCBI
mRatBN7.25124,276,074 - 124,295,836 (-)NCBI
Rnor_6.05129,154,544 - 129,175,596 (-)NCBI
Rnor_5.05132,993,292 - 133,008,003 (-)NCBI
Celera5123,017,963 - 123,036,843 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039110793   ⟹   XP_038966721
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85129,504,609 - 129,522,006 (-)NCBI
mRatBN7.25124,276,074 - 124,292,606 (-)NCBI
RefSeq Acc Id: XM_039110794   ⟹   XP_038966722
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85129,504,609 - 129,521,975 (-)NCBI
mRatBN7.25124,276,074 - 124,292,600 (-)NCBI
RefSeq Acc Id: XM_039110795   ⟹   XP_038966723
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85129,504,609 - 129,524,506 (-)NCBI
mRatBN7.25124,276,074 - 124,295,881 (-)NCBI
RefSeq Acc Id: XM_039110796   ⟹   XP_038966724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85129,504,609 - 129,524,396 (-)NCBI
mRatBN7.25124,276,074 - 124,295,767 (-)NCBI
RefSeq Acc Id: XM_039110797   ⟹   XP_038966725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85129,508,280 - 129,522,001 (-)NCBI
mRatBN7.25124,279,647 - 124,292,595 (-)NCBI
RefSeq Acc Id: XM_063288442   ⟹   XP_063144512
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr85129,504,609 - 129,524,396 (-)NCBI
RefSeq Acc Id: NP_001258328   ⟸   NM_001271399
- UniProtKB: A6JYZ2 (UniProtKB/TrEMBL),   A6JYZ3 (UniProtKB/TrEMBL),   F1LT57 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000012112   ⟸   ENSRNOT00000012112
RefSeq Acc Id: ENSRNOP00000074430   ⟸   ENSRNOT00000083096
RefSeq Acc Id: XP_038966723   ⟸   XM_039110795
- Peptide Label: isoform X3
- UniProtKB: A6JYZ3 (UniProtKB/TrEMBL),   F1LT57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966724   ⟸   XM_039110796
- Peptide Label: isoform X4
- UniProtKB: A6JYZ3 (UniProtKB/TrEMBL),   F1LT57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966721   ⟸   XM_039110793
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038966722   ⟸   XM_039110794
- Peptide Label: isoform X2
- UniProtKB: A6JYZ3 (UniProtKB/TrEMBL),   F1LT57 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038966725   ⟸   XM_039110797
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063144512   ⟸   XM_063288442
- Peptide Label: isoform X5

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1LT57-F1-model_v2 AlphaFold F1LT57 1-228 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1591038 AgrOrtholog
BioCyc Gene G2FUF-40349 BioCyc
Ensembl Genes ENSRNOG00000009138 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000012112 ENTREZGENE
  ENSRNOT00000012112.8 UniProtKB/TrEMBL
InterPro DUF4718 UniProtKB/TrEMBL
KEGG Report rno:689589 UniProtKB/TrEMBL
NCBI Gene 689589 ENTREZGENE
PANTHER HYPOTHETICAL PROTEIN LOC689589 UniProtKB/TrEMBL
  PTHR37858 UniProtKB/TrEMBL
Pfam DUF4718 UniProtKB/TrEMBL
PhenoGen C5h1orf185 PhenoGen
RatGTEx ENSRNOG00000009138 RatGTEx
UniProt A6JYZ2 ENTREZGENE, UniProtKB/TrEMBL
  A6JYZ3 ENTREZGENE, UniProtKB/TrEMBL
  F1LT57 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C5h1orf185  similar to human chromosome 1 open reading frame 185  LOC689589  hypothetical protein LOC689589  Symbol and Name Changed 1299863 APPROVED
2013-05-24 LOC689589  hypothetical protein LOC689589  LOC100364206  rCG50434-like  Data merged from RGD:2321452 1643240 APPROVED
2010-05-06 LOC100364206  rCG50434-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-01-09 LOC689589  hypothetical protein LOC689589  LOC683870  hypothetical protein LOC683870  Data merged from RGD:1597809 1643240 APPROVED
2006-11-20 LOC689589  hypothetical protein LOC689589      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-20 LOC683870  hypothetical protein LOC683870      Symbol and Name status set to provisional 70820 PROVISIONAL