Pan3 (Rattus norvegicus - Norway rat) |
Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCr8 | 12 | 12,512,835 - 12,637,066 (-) | NCBI | | GRCr8 | | | mRatBN7.2 | 12 | 7,476,707 - 7,595,384 (-) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 12 | 7,476,697 - 7,599,204 (-) | Ensembl | | mRatBN7.2 Ensembl | | | Rnor_6.0 | 12 | 9,214,116 - 9,331,901 (-) | NCBI | Rnor6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 12 | 9,216,536 - 9,331,195 (-) | Ensembl | Rnor6.0 | | rn6 | Rnor6.0 | Rnor_5.0 | 12 | 11,333,266 - 11,449,831 (-) | NCBI | Rnor5.0 | Rnor_5.0 | rn5 | Rnor5.0 | RGSC_v3.4 | 12 | 8,046,162 - 8,165,081 (-) | NCBI | RGSC3.4 | RGSC_v3.4 | rn4 | RGSC3.4 | Celera | 12 | 9,218,136 - 9,336,110 (-) | NCBI | | Celera | | | Cytogenetic Map | 12 | p11 | NCBI | | | | |
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PAN3 (Homo sapiens - human) |
Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCh38 | 13 | 28,138,193 - 28,295,335 (+) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 13 | 28,138,506 - 28,295,335 (+) | Ensembl | GRCh38 | | hg38 | GRCh38 | GRCh37 | 13 | 28,712,682 - 28,869,472 (+) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 13 | 27,646,417 - 27,767,472 (+) | NCBI | NCBI36 | Build 36 | hg18 | NCBI36 | Celera | 13 | 9,787,744 - 9,944,258 (+) | NCBI | | Celera | | | Cytogenetic Map | 13 | q12.2 | NCBI | | | | | HuRef | 13 | 9,533,856 - 9,690,407 (+) | NCBI | | HuRef | | | CHM1_1 | 13 | 28,681,211 - 28,837,730 (+) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 13 | 27,361,098 - 27,517,568 (+) | NCBI | | T2T-CHM13v2.0 | | |
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Pan3 (Mus musculus - house mouse) |
Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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GRCm39 | 5 | 147,363,018 - 147,485,310 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 5 | 147,366,971 - 147,485,312 (+) | Ensembl | | GRCm39 Ensembl | | | GRCm38 | 5 | 147,426,208 - 147,548,501 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 5 | 147,430,161 - 147,548,502 (+) | Ensembl | GRCm38 | | mm10 | GRCm38 | MGSCv37 | 5 | 148,242,156 - 148,360,077 (+) | NCBI | GRCm37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 5 | 147,741,238 - 147,858,845 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 5 | 145,424,005 - 145,541,898 (+) | NCBI | | Celera | | | Cytogenetic Map | 5 | G3 | NCBI | | | | | cM Map | 5 | 86.93 | NCBI | | | | |
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Pan3 (Chinchilla lanigera - long-tailed chinchilla) |
Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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ChiLan1.0 Ensembl | NW_004955497 | 7,500,748 - 7,647,255 (+) | Ensembl | ChiLan1.0 | | | | ChiLan1.0 | NW_004955497 | 7,500,478 - 7,646,541 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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PAN3 (Pan paniscus - bonobo/pygmy chimpanzee) |
Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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NHGRI_mPanPan1-v2 | 14 | 27,723,636 - 27,886,390 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 13 | 18,827,987 - 18,990,992 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 13 | 9,420,405 - 9,579,859 (+) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 13 | 27,797,325 - 27,921,266 (+) | NCBI | panpan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 13 | 27,798,607 - 27,921,266 (+) | Ensembl | panpan1.1 | | panPan2 | |
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PAN3 (Canis lupus familiaris - dog) |
Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
---|
CanFam3.1 | 25 | 11,416,321 - 11,550,830 (-) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 25 | 11,417,657 - 11,550,810 (-) | Ensembl | CanFam3.1 | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 25 | 11,479,225 - 11,613,731 (-) | NCBI | | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 25 | 11,544,373 - 11,678,148 (-) | NCBI | | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 25 | 11,545,635 - 11,678,130 (-) | Ensembl | | ROS_Cfam_1.0 Ensembl | | | UMICH_Zoey_3.1 | 25 | 11,440,197 - 11,574,226 (-) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 25 | 11,432,789 - 11,566,165 (-) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 25 | 11,474,666 - 11,609,590 (-) | NCBI | | UU_Cfam_GSD_1.0 | | |
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Pan3 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
Squirrel Assembly | Chr | Position (strand) | Source | Genome Browsers |
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JBrowse | NCBI | UCSC | Ensembl |
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HiC_Itri_2 | NW_024404945 | 172,518,051 - 172,654,798 (-) | NCBI | | HiC_Itri_2 | | | SpeTri2.0 Ensembl | NW_004936472 | 23,297,847 - 23,431,982 (+) | Ensembl | SpeTri2.0 | SpeTri2.0 Ensembl | | | SpeTri2.0 | NW_004936472 | 23,297,679 - 23,434,107 (+) | NCBI | SpeTri2.0 | SpeTri2.0 | | SpeTri2.0 |
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PAN3 (Sus scrofa - pig) |
Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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Sscrofa11.1 Ensembl | 11 | 5,487,138 - 5,614,452 (+) | Ensembl | Sscrofa11.1 | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 11 | 5,487,019 - 5,614,458 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 11 | 5,173,907 - 5,301,062 (+) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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PAN3 (Chlorocebus sabaeus - green monkey) |
Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
---|
JBrowse | NCBI | UCSC | Ensembl |
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ChlSab1.1 | 3 | 7,249,596 - 7,405,770 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 3 | 7,249,298 - 7,405,910 (+) | Ensembl | ChlSab1.1 | ChlSab1.1 Ensembl | chlSab2 | | Vero_WHO_p1.0 | NW_023666057 | 36,983,767 - 37,141,534 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Pan3 (Heterocephalus glaber - naked mole-rat) |
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