Tmem241 (transmembrane protein 241) - Rat Genome Database

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Gene: Tmem241 (transmembrane protein 241) Rattus norvegicus
Analyze
Symbol: Tmem241
Name: transmembrane protein 241
RGD ID: 1590602
Description: Predicted to enable antiporter activity. Predicted to be involved in transmembrane transport. Predicted to be active in Golgi apparatus. Orthologous to human TMEM241 (transmembrane protein 241); INTERACTS WITH acrylamide; bisphenol A; gentamycin.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC680558; similar to solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2183,168,072 - 3,318,340 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl183,168,067 - 3,318,293 (-)Ensembl
Rnor_6.0183,407,268 - 3,555,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,445,662 - 3,555,711 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,455,613 - 3,566,225 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,563,806 - 3,663,444 (-)NCBIRGSC3.4rn4RGSC3.4
Celera183,033,516 - 3,178,887 (-)NCBICelera
Cytogenetic Map18p13NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tmem241
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2183,168,072 - 3,318,340 (-)NCBImRatBN7.2
mRatBN7.2 Ensembl183,168,067 - 3,318,293 (-)Ensembl
Rnor_6.0183,407,268 - 3,555,741 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl183,445,662 - 3,555,711 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0183,455,613 - 3,566,225 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4183,563,806 - 3,663,444 (-)NCBIRGSC3.4rn4RGSC3.4
Celera183,033,516 - 3,178,887 (-)NCBICelera
Cytogenetic Map18p13NCBI
TMEM241
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381823,238,522 - 23,437,961 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p13 Ensembl1823,197,144 - 23,437,961 (-)EnsemblGRCh38hg38GRCh38
GRCh371820,875,977 - 21,017,925 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361819,129,975 - 19,271,923 (-)NCBINCBI36hg18NCBI36
Build 341819,129,978 - 19,271,923NCBI
Celera1817,691,854 - 17,833,802 (-)NCBI
Cytogenetic Map18q11.2NCBI
HuRef1817,730,653 - 17,872,592 (-)NCBIHuRef
CHM1_11820,803,318 - 20,945,245 (-)NCBICHM1_1
T2T-CHM13v2.01823,490,110 - 23,632,036 (-)NCBI
Tmem241
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391812,113,193 - 12,254,604 (-)NCBIGRCm39mm39
GRCm39 Ensembl1812,097,507 - 12,254,594 (-)Ensembl
GRCm381811,980,119 - 12,121,570 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1811,964,450 - 12,121,537 (-)EnsemblGRCm38mm10GRCm38
MGSCv371812,140,447 - 12,279,962 (-)NCBIGRCm37mm9NCBIm37
MGSCv361812,124,839 - 12,265,016 (-)NCBImm8
Celera1812,221,628 - 12,354,975 (-)NCBICelera
Cytogenetic Map18A1NCBI
Tmem241
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540211,530,611 - 11,641,687 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495540211,514,232 - 11,641,494 (-)NCBIChiLan1.0ChiLan1.0
TMEM241
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
PanPan1.11820,135,340 - 20,316,638 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1820,173,513 - 20,316,638 (-)Ensemblpanpan1.1panPan2
Mhudiblu_PPA_v01816,464,723 - 16,689,144 (-)NCBIMhudiblu_PPA_v0panPan3
TMEM241
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1764,860,366 - 64,978,408 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl764,869,125 - 64,977,449 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha764,322,677 - 64,431,487 (+)NCBI
ROS_Cfam_1.0764,933,477 - 65,042,360 (+)NCBI
ROS_Cfam_1.0 Ensembl764,933,498 - 65,044,141 (+)Ensembl
UMICH_Zoey_3.1764,601,115 - 64,710,125 (+)NCBI
UNSW_CanFamBas_1.0764,616,939 - 64,732,902 (+)NCBI
UU_Cfam_GSD_1.0764,921,433 - 65,031,381 (+)NCBI
Tmem241
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494460,939,055 - 61,035,768 (+)NCBI
SpeTri2.0NW_0049365502,778,188 - 2,877,025 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM241
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl6108,232,864 - 108,329,730 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.16108,227,575 - 108,329,745 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.26100,802,125 - 100,903,270 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM241
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11857,088,629 - 57,238,430 (+)NCBIChlSab1.1chlSab2
ChlSab1.1 Ensembl1857,088,994 - 57,171,912 (+)EnsemblChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366605031,840,047 - 31,976,959 (+)NCBIVero_WHO_p1.0
Tmem241
(Heterocephalus glaber - naked mole-rat)
Naked Mole-rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247708,706,558 - 8,814,972 (+)EnsemblHetGla_female_1.0hetGla2
HetGla 1.0NW_0046247708,706,531 - 8,814,972 (+)NCBIHetGla_female_1.0hetGla2

Position Markers
D18Rat133  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,206,505 - 3,206,708 (+)MAPPERmRatBN7.2
Rnor_6.0183,447,405 - 3,447,607NCBIRnor6.0
Rnor_5.0183,458,072 - 3,458,274UniSTSRnor5.0
RGSC_v3.4183,555,321 - 3,555,524RGDRGSC3.4
RGSC_v3.4183,555,322 - 3,555,524UniSTSRGSC3.4
RGSC_v3.1183,555,307 - 3,555,651RGD
Celera183,073,242 - 3,073,444UniSTS
SHRSP x BN Map182.52RGD
SHRSP x BN Map182.52UniSTS
Cytogenetic Map18p13UniSTS
D18Rat111  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,258,004 - 3,258,245 (+)MAPPERmRatBN7.2
Rnor_6.0183,499,094 - 3,499,334NCBIRnor6.0
Rnor_5.0183,509,665 - 3,509,905UniSTSRnor5.0
RGSC_v3.4183,606,816 - 3,607,247RGDRGSC3.4
RGSC_v3.4183,606,822 - 3,607,062UniSTSRGSC3.4
RGSC_v3.1183,606,822 - 3,607,062RGD
Celera183,124,576 - 3,124,816UniSTS
RH 3.4 Map1844.3RGD
RH 3.4 Map1844.3UniSTS
RH 2.0 Map18894.4RGD
SHRSP x BN Map182.52RGD
Cytogenetic Map18p13UniSTS
D18Got84  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,260,705 - 3,260,860 (+)MAPPERmRatBN7.2
Rnor_6.0183,502,987 - 3,503,141NCBIRnor6.0
Rnor_5.0183,512,462 - 3,512,616UniSTSRnor5.0
RGSC_v3.4183,609,057 - 3,609,212RGDRGSC3.4
RGSC_v3.4183,609,058 - 3,609,212UniSTSRGSC3.4
RGSC_v3.1183,609,057 - 3,609,212RGD
Celera183,129,172 - 3,129,338UniSTS
RH 2.0 Map18826.3RGD
Cytogenetic Map18p13UniSTS
D18Mco1  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,287,248 - 3,287,445 (+)MAPPERmRatBN7.2
mRatBN7.2343,706,366 - 43,706,533 (+)MAPPERmRatBN7.2
Rnor_6.0183,524,613 - 3,524,807NCBIRnor6.0
Rnor_6.0345,284,413 - 45,284,579NCBIRnor6.0
Rnor_5.0183,534,088 - 3,534,282UniSTSRnor5.0
Rnor_5.0350,401,022 - 50,401,188UniSTSRnor5.0
RGSC_v3.4183,632,387 - 3,632,581UniSTSRGSC3.4
RGSC_v3.4340,932,267 - 40,932,433UniSTSRGSC3.4
RGSC_v3.1361,403,992 - 61,404,152RGD
Celera341,756,534 - 41,756,700UniSTS
Celera183,147,855 - 3,148,061UniSTS
Cytogenetic Map18p13UniSTS
Cytogenetic Map3q21UniSTS
D18Chm22  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,305,702 - 3,305,910 (+)MAPPERmRatBN7.2
Rnor_6.0183,543,065 - 3,543,272NCBIRnor6.0
Rnor_5.0183,552,540 - 3,552,747UniSTSRnor5.0
RGSC_v3.4183,650,839 - 3,651,046UniSTSRGSC3.4
Celera183,166,329 - 3,166,536UniSTS
Cytogenetic Map18p13UniSTS
AI548503  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,317,853 - 3,317,952 (+)MAPPERmRatBN7.2
Rnor_6.0183,555,244 - 3,555,342NCBIRnor6.0
Rnor_5.0183,564,719 - 3,564,817UniSTSRnor5.0
RGSC_v3.4183,663,038 - 3,663,136UniSTSRGSC3.4
Celera183,178,390 - 3,178,488UniSTS
RH 3.4 Map1881.0UniSTS
Cytogenetic Map18p13UniSTS
AU049981  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2183,260,705 - 3,260,878 (+)MAPPERmRatBN7.2
Rnor_6.0183,502,987 - 3,503,159NCBIRnor6.0
Rnor_5.0183,512,462 - 3,512,634UniSTSRnor5.0
RGSC_v3.4183,609,058 - 3,609,230UniSTSRGSC3.4
Celera183,129,172 - 3,129,356UniSTS
Cytogenetic Map18p13UniSTS


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
8552968Pigfal19Plasma insulin-like growth factor 1 level QTL 1911.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)18125758124Rat
9590248Scort10Serum corticosterone level QTL 1019.710.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)18125758124Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor surface area measurement (CMO:0002078)18224947722066430Rat
1641910Colcr3Colorectal carcinoma resistance QTL 35.020.000007intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)18224947722066430Rat

miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:177
Count of miRNA genes:128
Interacting mature miRNAs:139
Transcripts:ENSRNOT00000029274, ENSRNOT00000074766
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 5 1
Low 3 43 57 41 19 41 8 10 74 35 36 10 8
Below cutoff 1

Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000029274   ⟹   ENSRNOP00000038238
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,168,067 - 3,318,281 (-)Ensembl
Rnor_6.0 Ensembl183,445,662 - 3,555,711 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000095890   ⟹   ENSRNOP00000094849
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,203,873 - 3,318,293 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000102442   ⟹   ENSRNOP00000088124
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl183,264,776 - 3,318,281 (-)Ensembl
RefSeq Acc Id: XM_001057715   ⟹   XP_001057715
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2183,202,194 - 3,318,340 (-)NCBI
Rnor_6.0183,444,946 - 3,555,740 (-)NCBI
Rnor_5.0183,455,613 - 3,566,225 (-)NCBI
RGSC_v3.4183,563,806 - 3,663,444 (-)RGD
Sequence:
RefSeq Acc Id: XM_017601069   ⟹   XP_017456558
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2183,168,072 - 3,318,340 (-)NCBI
Rnor_6.0183,407,268 - 3,555,741 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017601071   ⟹   XP_017456560
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2183,214,060 - 3,318,340 (-)NCBI
Rnor_6.0183,454,946 - 3,555,740 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039097281   ⟹   XP_038953209
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2183,202,194 - 3,318,340 (-)NCBI
RefSeq Acc Id: XM_039097282   ⟹   XP_038953210
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2183,181,486 - 3,318,340 (-)NCBI
RefSeq Acc Id: XR_001842036
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2183,168,072 - 3,318,340 (-)NCBI
Rnor_6.0183,407,268 - 3,555,741 (-)NCBI
Sequence:
RefSeq Acc Id: XR_005496208
RefSeq Status:
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2183,248,459 - 3,318,340 (-)NCBI
Reference Sequences
RefSeq Acc Id: XP_001057715   ⟸   XM_001057715
- Peptide Label: isoform X1
- UniProtKB: D4A9Q0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456558   ⟸   XM_017601069
- Peptide Label: isoform X3
- Sequence:
RefSeq Acc Id: XP_017456560   ⟸   XM_017601071
- Peptide Label: isoform X5
- Sequence:
RefSeq Acc Id: ENSRNOP00000038238   ⟸   ENSRNOT00000029274
RefSeq Acc Id: XP_038953210   ⟸   XM_039097282
- Peptide Label: isoform X4
RefSeq Acc Id: XP_038953209   ⟸   XM_039097281
- Peptide Label: isoform X2
RefSeq Acc Id: ENSRNOP00000094849   ⟸   ENSRNOT00000095890
RefSeq Acc Id: ENSRNOP00000088124   ⟸   ENSRNOT00000102442

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A9Q0-F1-model_v2 AlphaFold D4A9Q0 1-297 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700639
Promoter ID:EPDNEW_R11158
Type:initiation region
Name:Tmem241_1
Description:transmembrane protein 241
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0183,555,679 - 3,555,739EPDNEW

Strain Variation

Strain Sequence Variants (mRatBN7.2)
ACI/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
ACI/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN-Lx/CubMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/NHsdMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BN/SsN (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BUF/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH2/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
BXH3/CubMcwi (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
DA/OlaHsd (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/DuCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/N (2020)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
F344/Stm (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FHH/EurMcwi (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE16/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
FXLE18/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
GK/FarMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB10/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB2/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB20/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB31/IpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
HXB4/IpcvMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LE/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEW/Crl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF10A/StmMcwi (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF11/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1A/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF1C/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF2B/Stm (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF3/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LEXF4/Stm (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LH/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LL/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
LN/MavRrrcAek (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Kwitek
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
M520/NRrrcMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MR/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
MWF/Hsd (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
PVG/Seac (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Japan
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHR/OlalpcvMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SHRSP/A3NCrl (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SR/JrHsd (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Envigo
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
SS/JrHsdMcwi (2019)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: MCW
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WAG/RijCrl (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WKY/NCrl (2019)
Visual CSV TAB Printer
Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: Charles River
Description: Dr. Mindy Dwinell - Hybrid rat diversity program
WN/N (2020)
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Platform: GSPMC-Illumina-NovaSeq6000
Secondary Analysis: BWA_mem_v.0.7.17,_GATK_v.4.1.3.0
Breeder: NIH
Description: Dr. Mindy Dwinell - Hybrid rat diversity program

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590602 AgrOrtholog
BioCyc Gene G2FUF-8376 BioCyc
Ensembl Genes ENSRNOG00000023412 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000038238 ENTREZGENE
  ENSRNOP00000038238.6 UniProtKB/TrEMBL
  ENSRNOP00000088124.1 UniProtKB/TrEMBL
  ENSRNOP00000094849 ENTREZGENE
  ENSRNOP00000094849.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000029274 ENTREZGENE
  ENSRNOT00000029274.8 UniProtKB/TrEMBL
  ENSRNOT00000095890 ENTREZGENE
  ENSRNOT00000095890.1 UniProtKB/TrEMBL
  ENSRNOT00000102442 ENTREZGENE
  ENSRNOT00000102442.1 UniProtKB/TrEMBL
KEGG Report rno:680558 UniProtKB/TrEMBL
NCBI Gene 680558 ENTREZGENE
PhenoGen Tmem241 PhenoGen
UniProt A0A8I6A5V3_RAT UniProtKB/TrEMBL
  A0A8I6ALK9_RAT UniProtKB/TrEMBL
  D4A9Q0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2013-05-24 Tmem241  transmembrane protein 241  LOC684948  similar to solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1  Data Merged 1643240 APPROVED
2011-12-06 Tmem241  transmembrane protein 241  LOC680558  similar to solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC680558  similar to solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC684948  similar to solute carrier family 35 (UDP-glucuronic acid/UDP-N-acetylgalactosamine dual transporter), member D1      Symbol and Name status set to provisional 70820 PROVISIONAL