Btnl9 (butyrophilin-like 9) - Rat Genome Database

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Gene: Btnl9 (butyrophilin-like 9) Rattus norvegicus
Analyze
Symbol: Btnl9
Name: butyrophilin-like 9
RGD ID: 1590287
Description: Predicted to enable signaling receptor binding activity. Predicted to be involved in T cell receptor signaling pathway and regulation of cytokine production. Predicted to be active in external side of plasma membrane. Orthologous to human BTNL9 (butyrophilin like 9); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: butyrophilin-like protein 9; LOC684480; similar to butyrophilin 3
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81033,967,098 - 33,990,304 (-)NCBIGRCr8
mRatBN7.21033,466,059 - 33,489,229 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,470,536 - 33,489,025 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01034,424,830 - 34,443,749 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,425,069 - 34,439,470 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01034,200,983 - 34,219,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1032,853,142 - 32,872,045 (-)NCBICelera
Cytogenetic Map10q21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Btnl9
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81033,967,098 - 33,990,304 (-)NCBIGRCr8
mRatBN7.21033,466,059 - 33,489,229 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1033,470,536 - 33,489,025 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.01034,424,830 - 34,443,749 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1034,425,069 - 34,439,470 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01034,200,983 - 34,219,482 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1032,853,142 - 32,872,045 (-)NCBICelera
Cytogenetic Map10q21NCBI
BTNL9
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385181,040,266 - 181,061,521 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5181,040,225 - 181,061,521 (+)EnsemblGRCh38hg38GRCh38
GRCh375180,467,266 - 180,488,521 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365180,399,854 - 180,421,121 (+)NCBINCBI36Build 36hg18NCBI36
Build 345180,399,856 - 180,421,121NCBI
Celera5176,091,046 - 176,116,223 (+)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5175,192,399 - 175,217,723 (+)NCBIHuRef
CHM1_15179,899,631 - 179,920,752 (+)NCBICHM1_1
T2T-CHM13v2.05181,596,648 - 181,622,763 (+)NCBIT2T-CHM13v2.0
Btnl9
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391149,059,152 - 49,077,916 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1149,056,412 - 49,077,986 (-)EnsemblGRCm39 Ensembl
GRCm381149,168,325 - 49,187,089 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1149,165,585 - 49,187,159 (-)EnsemblGRCm38mm10GRCm38
MGSCv371148,981,827 - 49,000,591 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361149,011,748 - 49,030,512 (-)NCBIMGSCv36mm8
Celera1153,730,931 - 53,749,699 (-)NCBICelera
Cytogenetic Map11B1.2NCBI
cM Map1129.18NCBI
Btnl9
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955530263,915 - 284,368 (-)NCBIChiLan1.0ChiLan1.0
BTNL9
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24176,030,754 - 176,053,083 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15174,194,835 - 174,217,164 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05176,210,189 - 176,232,126 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15183,523,205 - 183,544,430 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5183,528,444 - 183,542,738 (+)Ensemblpanpan1.1panPan2
BTNL9
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.111234,595 - 271,623 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl11234,580 - 270,121 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha11292,278 - 331,296 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.011194,787 - 233,822 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl11194,786 - 235,968 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.111165,633 - 204,659 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.011254,590 - 293,605 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.011415,998 - 455,021 (+)NCBIUU_Cfam_GSD_1.0
Btnl9
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213118,078,260 - 118,240,619 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936826513,296 - 526,105 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_004936826509,265 - 526,810 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
BTNL9
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl257,728,524 - 57,745,246 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1257,728,520 - 57,745,249 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22159,560,626 - 159,577,343 (-)NCBISscrofa10.2Sscrofa10.2susScr3
BTNL9
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Vero_WHO_p1.0NW_023666039489,242 - 505,324 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Btnl9
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_004624958438,487 - 477,678 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Btnl9
118 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:133
Count of miRNA genes:103
Interacting mature miRNAs:114
Transcripts:ENSRNOT00000072081
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
9589136Insul27Insulin level QTL 2710.460.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)101147401056474010Rat
1578779Tcas10Tongue tumor susceptibility QTL 103.12tongue integrity trait (VT:0010553)number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)103129743976297439Rat
631564Apr3Acute phase response QTL 33.9blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)101527595560275955Rat
1298069Bp168Blood pressure QTL 1685.5blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)102652195798003205Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)1074336463851208Rat
631557Bp136Blood pressure QTL 1360.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)103063205375632053Rat
61325Aia5Adjuvant induced arthritis QTL 50.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10637574651375746Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135225947Rat
2298544Neuinf9Neuroinflammation QTL 94.6nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)10580199062146030Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1041834445418344Rat
1554317Bmd4Bone mineral density QTL 49.40.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)101981604299406971Rat
1598852Anxrr19Anxiety related response QTL 195.07body movement coordination trait (VT:0005424)number of rearing movements in an experimental apparatus (CMO:0001752)101816784163167841Rat
1581497Esta1Estrogen-induced thymic atrophy QTL 1thymus mass (VT:0004954)thymus wet weight (CMO:0000855)102132980561345413Rat
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
724527Bp148Blood pressure QTL 1480.0001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102845313673453136Rat
1331762Rf40Renal function QTL 403.873kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)102929950464155584Rat
2300171Bmd58Bone mineral density QTL 584.90.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)102694462871944628Rat
61354Pia10Pristane induced arthritis QTL 100.01joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
2301967Cm73Cardiac mass QTL 734.55heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)101448701189062041Rat
2303118Mamtr7Mammary tumor resistance QTL 70.003mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)109658275104670812Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10538701450387014Rat
9590310Scort19Serum corticosterone level QTL 196.30.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
10402859Bp381Blood pressure QTL 3810.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2316949Gluco60Glucose level QTL 603.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)1014487011107057807Rat
6893352Bw100Body weight QTL 1000.330.6body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
724556Pur2Proteinuria QTL 25.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)102242750090627625Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10615418273453136Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10538701450387014Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10538701450387014Rat
70223Bp57Blood pressure QTL 575arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10180676123Rat
1354587Kidm21Kidney mass QTL 213.3kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)101502851360430477Rat
6893350Bw99Body weight QTL 990.870.16body mass (VT:0001259)body weight (CMO:0000012)11590666560906665Rat
70224Eae3Experimental allergic encephalomyelitis QTL 34.1nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)102652195761345413Rat
2298480Eau7Experimental allergic uveoretinitis QTL 70.0049uvea integrity trait (VT:0010551)experimental autoimmune uveitis score (CMO:0001504)102795762634490668Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10538701450387014Rat
1331791Cm31Cardiac mass QTL 313.84606heart mass (VT:0007028)heart wet weight (CMO:0000069)1029299504107211142Rat
2313087Bmd80Bone mineral density QTL 803.20.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)101960648364606483Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138328221Rat
631531Iresp2Immunoglobin response QTL26.3blood immunoglobulin E amount (VT:0002492)serum immunoglobulin E level (CMO:0002101)102291826836400810Rat
631532Cm50Cardiac mass QTL 506.6heart mass (VT:0007028)calculated heart weight (CMO:0000073)101790711351786432Rat
7411611Foco17Food consumption QTL 1718.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)10142315980Rat
631267Cia20Collagen induced arthritis QTL 203.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1023444813104060283Rat
1600371Mcs21Mammary carcinoma susceptibility QTL 213mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)102887565052200160Rat
631268Cia21Collagen induced arthritis QTL 213.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)1014487011104060283Rat
9590268Scort13Serum corticosterone level QTL 133.260.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)101147401056474010Rat
1576311Pia26Pristane induced arthritis QTL 26joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)103122402675632053Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10635789696121100Rat
2292441Bp308Blood pressure QTL 308arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)102760646872606468Rat
2313055Bw96Body weight QTL 963.60.0001body mass (VT:0001259)body weight (CMO:0000012)101960648364606483Rat
631542Bp82Blood pressure QTL 826.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)102652195798952741Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 41 50 71 70 39 25 39 6 189 89 30 44 55 31

Sequence


Ensembl Acc Id: ENSRNOT00000072081   ⟹   ENSRNOP00000065366
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1033,470,536 - 33,489,025 (-)Ensembl
Rnor_6.0 Ensembl1034,425,069 - 34,439,470 (-)Ensembl
RefSeq Acc Id: XM_039087158   ⟹   XP_038943086
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81033,971,437 - 33,990,244 (-)NCBI
mRatBN7.21033,470,313 - 33,489,211 (-)NCBI
RefSeq Acc Id: XM_039087159   ⟹   XP_038943087
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81033,971,437 - 33,990,241 (-)NCBI
mRatBN7.21033,470,313 - 33,489,209 (-)NCBI
RefSeq Acc Id: XM_039087161   ⟹   XP_038943089
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81033,967,098 - 33,990,304 (-)NCBI
mRatBN7.21033,466,059 - 33,489,229 (-)NCBI
RefSeq Acc Id: XM_039087163   ⟹   XP_038943091
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81033,967,098 - 33,990,301 (-)NCBI
mRatBN7.21033,466,059 - 33,489,228 (-)NCBI
Ensembl Acc Id: ENSRNOP00000065366   ⟸   ENSRNOT00000072081
RefSeq Acc Id: XP_038943089   ⟸   XM_039087161
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038943091   ⟸   XM_039087163
- Peptide Label: isoform X4
- UniProtKB: A6HDV5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038943086   ⟸   XM_039087158
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038943087   ⟸   XM_039087159
- Peptide Label: isoform X2
Protein Domains
B30.2/SPRY   Ig-like

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R7E0-F1-model_v2 AlphaFold M0R7E0 1-529 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1590287 AgrOrtholog
BioCyc Gene G2FUF-25305 BioCyc
Ensembl Genes ENSRNOG00000046377 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000072081.3 UniProtKB/TrEMBL
Gene3D-CATH 2.60.120.920 UniProtKB/TrEMBL
  2.60.40.10 UniProtKB/TrEMBL
InterPro B30.2/SPRY UniProtKB/TrEMBL
  B30.2/SPRY_sf UniProtKB/TrEMBL
  Butyrophylin UniProtKB/TrEMBL
  CD80_C2-set UniProtKB/TrEMBL
  ConA-like_dom UniProtKB/TrEMBL
  Ig-like_dom UniProtKB/TrEMBL
  Ig-like_dom_sf UniProtKB/TrEMBL
  Ig-like_fold UniProtKB/TrEMBL
  Ig_sub UniProtKB/TrEMBL
  Ig_V-set UniProtKB/TrEMBL
  IgSF_BTN/MOG UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY_rcpt UniProtKB/TrEMBL
NCBI Gene 684480 ENTREZGENE
PANTHER BUTYROPHILIN UniProtKB/TrEMBL
  BUTYROPHILIN-LIKE PROTEIN 9 UniProtKB/TrEMBL
Pfam C2-set_2 UniProtKB/TrEMBL
  PRY UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
  V-set UniProtKB/TrEMBL
PhenoGen Btnl9 PhenoGen
PRINTS BUTYPHLNCDUF UniProtKB/TrEMBL
PROSITE B302_SPRY UniProtKB/TrEMBL
  IG_LIKE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000046377 RatGTEx
SMART PRY UniProtKB/TrEMBL
  SM00409 UniProtKB/TrEMBL
  SPRY UniProtKB/TrEMBL
Superfamily-SCOP ConA_like_lec_gl UniProtKB/TrEMBL
  SSF48726 UniProtKB/TrEMBL
UniProt A6HDV5 ENTREZGENE, UniProtKB/TrEMBL
  M0R7E0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-21 Btnl9  butyrophilin-like 9  LOC684480  similar to butyrophilin 3  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-20 LOC684480  similar to butyrophilin 3      Symbol and Name status set to provisional 70820 PROVISIONAL