Dera (deoxyribose-phosphate aldolase) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Dera (deoxyribose-phosphate aldolase) Rattus norvegicus
Analyze
Symbol: Dera
Name: deoxyribose-phosphate aldolase
RGD ID: 1589836
Description: Predicted to enable deoxyribose-phosphate aldolase activity. Predicted to be involved in carbohydrate catabolic process; deoxyribonucleoside catabolic process; and deoxyribonucleotide catabolic process. Predicted to be located in nucleoplasm. Orthologous to human DERA (deoxyribose-phosphate aldolase); PARTICIPATES IN pentose phosphate pathway; ribose 5-phosphate isomerase deficiency pathway; transaldolase deficiency pathway; INTERACTS WITH (+)-schisandrin B; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: 2-deoxyribose-5-phosphate aldolase homolog; 2-deoxyribose-5-phosphate aldolase homolog (C. elegans); 2-deoxyribose-5-phosphate aldolase homolog (C. elegans), pseudogene 1; 2-deoxyribose-5-phosphate aldolase homolog, pseudogene 1; deoxyribose-phosphate aldolase (putative); deoxyribose-phosphate aldolase, pseudogene 1; Dera-ps1; LOC690945; similar to Putative deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84172,394,971 - 172,473,746 (+)NCBIGRCr8
GRCr8 Ensembl4172,394,962 - 172,490,142 (+)EnsemblGRCr8 Ensembl
mRatBN7.24170,663,689 - 170,742,469 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4170,663,665 - 170,758,865 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4176,958,855 - 177,037,536 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04172,743,186 - 172,821,868 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04171,363,565 - 171,442,248 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04171,748,254 - 171,826,414 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4171,748,273 - 171,826,409 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04236,005,130 - 236,082,656 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44174,881,147 - 174,960,828 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4159,239,888 - 159,318,620 (+)NCBICelera
Cytogenetic Map4q44NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View
COVID-19  (ISO)

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IEA)
nucleoplasm  (IEA,ISO)
nucleus  (IEA)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. SMPDB Annotation Import Pipeline Pipeline to import SMPDB annotations from SMPDB into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
5. Comprehensive gene review and curation RGD comprehensive gene curation
Additional References at PubMed
PMID:9226884   PMID:23376485   PMID:31505169  


Genomics

Comparative Map Data
Dera
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84172,394,971 - 172,473,746 (+)NCBIGRCr8
GRCr8 Ensembl4172,394,962 - 172,490,142 (+)EnsemblGRCr8 Ensembl
mRatBN7.24170,663,689 - 170,742,469 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4170,663,665 - 170,758,865 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx4176,958,855 - 177,037,536 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04172,743,186 - 172,821,868 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04171,363,565 - 171,442,248 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.04171,748,254 - 171,826,414 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4171,748,273 - 171,826,409 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.04236,005,130 - 236,082,656 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.44174,881,147 - 174,960,828 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera4159,239,888 - 159,318,620 (+)NCBICelera
Cytogenetic Map4q44NCBI
DERA
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381215,911,332 - 16,037,381 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1215,911,302 - 16,037,381 (+)EnsemblGRCh38hg38GRCh38
GRCh371216,064,266 - 16,190,315 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361215,955,453 - 16,081,582 (+)NCBINCBI36Build 36hg18NCBI36
Build 341215,955,549 - 16,081,478NCBI
Celera1221,209,100 - 21,335,267 (+)NCBICelera
Cytogenetic Map12p12.3NCBI
HuRef1215,833,389 - 15,959,597 (+)NCBIHuRef
CHM1_11216,030,127 - 16,156,272 (+)NCBICHM1_1
T2T-CHM13v2.01215,788,590 - 15,914,666 (+)NCBIT2T-CHM13v2.0
Dera
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396137,731,093 - 137,814,894 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6137,731,544 - 137,834,338 (+)EnsemblGRCm39 Ensembl
GRCm386137,754,577 - 137,837,872 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6137,754,546 - 137,857,340 (+)EnsemblGRCm38mm10GRCm38
MGSCv376137,703,098 - 137,786,393 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv366137,718,773 - 137,802,068 (+)NCBIMGSCv36mm8
Celera6140,820,521 - 140,904,146 (+)NCBICelera
Cytogenetic Map6G1NCBI
cM Map667.32NCBI
Dera
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541312,571,176 - 12,685,852 (+)EnsemblChiLan1.0
ChiLan1.0NW_00495541312,571,341 - 12,682,985 (+)NCBIChiLan1.0ChiLan1.0
DERA
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21021,358,283 - 21,483,635 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11221,355,045 - 21,480,408 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01215,912,337 - 16,037,778 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11216,308,938 - 16,433,927 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1216,308,938 - 16,433,916 (+)Ensemblpanpan1.1panPan2
DERA
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12730,675,225 - 30,741,202 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2730,675,247 - 30,817,388 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2715,655,878 - 15,773,298 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02730,994,487 - 31,111,963 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2730,992,054 - 31,111,933 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12730,885,023 - 31,002,386 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02730,839,662 - 30,957,127 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02715,378,197 - 15,495,659 (+)NCBIUU_Cfam_GSD_1.0
Dera
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494591,827,965 - 91,937,587 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365871,555,531 - 1,665,289 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365871,555,534 - 1,665,217 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
DERA
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl556,590,980 - 56,706,458 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1556,590,982 - 56,706,479 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2559,878,455 - 59,995,841 (-)NCBISscrofa10.2Sscrofa10.2susScr3
DERA
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11115,819,678 - 15,947,137 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1115,819,708 - 15,947,159 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366606919,353,060 - 19,480,500 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Dera
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475222,031,023 - 22,133,821 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475222,031,094 - 22,133,771 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Dera
531 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:285
Count of miRNA genes:177
Interacting mature miRNAs:207
Transcripts:ENSRNOT00000009998
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
6478754Anxrr43Anxiety related response QTL 430.14035locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4146370897184426481Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
6478693Anxrr32Anxiety related response QTL 320.00092locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4146370897184426481Rat
6478757Anxrr44Anxiety related response QTL 440.01087locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
6478700Anxrr33Anxiety related response QTL 330.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
10053718Scort25Serum corticosterone level QTL 252.150.0097blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)4157292416184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
10401796Kidm48Kidney mass QTL 48kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)4147299608184426481Rat
6478718Anxrr34Anxiety related response QTL 340.00896locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat
6478782Anxrr52Anxiety related response QTL 520.02091locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
6478720Alc23Alcohol consumption QTL 230.00509drinking behavior trait (VT:0001422)ethanol drink intake rate to body weight ratio (CMO:0001616)4155834926184426481Rat
6478785Anxrr53Anxiety related response QTL 530.01397locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
6478728Anxrr36Anxiety related response QTL 360.01061locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
634342Cia24Collagen induced arthritis QTL 244.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4148121375176967367Rat
6478733Anxrr37Anxiety related response QTL 370.00095locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
6478737Anxrr38Anxiety related response QTL 380.00159locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4155834926184426481Rat
2293659Bmd35Bone mineral density QTL 354.50.0001femur strength trait (VT:0010010)femoral neck ultimate force (CMO:0001703)4160623982184426481Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat
6478748Anxrr42Anxiety related response QTL 420.28008locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4146370897184426481Rat

Markers in Region
D4Rat69  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr84172,461,416 - 172,461,578 (+)Marker Load Pipeline
mRatBN7.24170,730,137 - 170,730,299 (+)MAPPERmRatBN7.2
Rnor_6.04171,813,837 - 171,813,998NCBIRnor6.0
Rnor_5.04236,070,607 - 236,070,768UniSTSRnor5.0
RGSC_v3.44174,948,632 - 174,948,794RGDRGSC3.4
RGSC_v3.44174,948,633 - 174,948,794UniSTSRGSC3.4
Celera4159,306,232 - 159,306,393UniSTS
RGSC_v3.14175,193,756 - 175,193,918RGD
RH 2.0 Map41062.7RGD
SHRSP x BN Map491.8399RGD
FHH x ACI Map4111.33RGD
Cytogenetic Map4q44UniSTS
RH132144  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24170,675,423 - 170,675,605 (+)MAPPERmRatBN7.2
Rnor_6.04171,760,008 - 171,760,189NCBIRnor6.0
Rnor_5.04236,016,880 - 236,017,061UniSTSRnor5.0
RGSC_v3.44174,892,883 - 174,893,064UniSTSRGSC3.4
Celera4159,251,644 - 159,251,825UniSTS
RH 3.4 Map41027.1UniSTS
Cytogenetic Map4q44UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
9 11 49 113 91 90 59 25 59 6 218 97 11 93 45 60 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000009998   ⟹   ENSRNOP00000009998
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4172,394,964 - 172,473,735 (+)Ensembl
mRatBN7.2 Ensembl4170,663,665 - 170,742,469 (+)Ensembl
Rnor_6.0 Ensembl4171,748,273 - 171,826,409 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114322   ⟹   ENSRNOP00000092261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4172,394,962 - 172,473,739 (+)Ensembl
mRatBN7.2 Ensembl4170,663,763 - 170,742,470 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116905   ⟹   ENSRNOP00000088760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4172,394,964 - 172,490,142 (+)Ensembl
mRatBN7.2 Ensembl4170,663,665 - 170,758,865 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117802   ⟹   ENSRNOP00000087892
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4172,416,533 - 172,473,739 (+)Ensembl
mRatBN7.2 Ensembl4170,685,252 - 170,742,470 (+)Ensembl
RefSeq Acc Id: NM_001399006   ⟹   NP_001385935
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84172,394,971 - 172,473,746 (+)NCBI
mRatBN7.24170,663,689 - 170,742,469 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001385935 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM01579 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000009998
  ENSRNOP00000009998.5
  ENSRNOP00000087892.1
  ENSRNOP00000088760.1
  ENSRNOP00000092261.1
Ensembl Acc Id: ENSRNOP00000009998   ⟸   ENSRNOT00000009998
Ensembl Acc Id: ENSRNOP00000088760   ⟸   ENSRNOT00000116905
Ensembl Acc Id: ENSRNOP00000087892   ⟸   ENSRNOT00000117802
Ensembl Acc Id: ENSRNOP00000092261   ⟸   ENSRNOT00000114322
RefSeq Acc Id: NP_001385935   ⟸   NM_001399006
- UniProtKB: A6IMK8 (UniProtKB/TrEMBL),   F1M1H0 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M1H0-F1-model_v2 AlphaFold F1M1H0 1-318 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693473
Promoter ID:EPDNEW_R3996
Type:initiation region
Name:Dera_1
Description:deoxyribose-phosphate aldolase
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04171,748,298 - 171,748,358EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589836 AgrOrtholog
BioCyc Gene G2FUF-42568 BioCyc
Ensembl Genes ENSRNOG00000007570 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000009998 ENTREZGENE
  ENSRNOT00000009998.5 UniProtKB/TrEMBL
  ENSRNOT00000114322.1 UniProtKB/TrEMBL
  ENSRNOT00000116905.1 UniProtKB/TrEMBL
  ENSRNOT00000117802.1 UniProtKB/TrEMBL
Gene3D-CATH 3.20.20.70 UniProtKB/TrEMBL
InterPro Aldolase_TIM UniProtKB/TrEMBL
  DeoC UniProtKB/TrEMBL
  DeoC/FbaB/lacD_aldolase UniProtKB/TrEMBL
NCBI Gene 690945 ENTREZGENE
PANTHER DEOXYRIBOSE-PHOSPHATE ALDOLASE UniProtKB/TrEMBL
  PTHR10889 UniProtKB/TrEMBL
Pfam DeoC UniProtKB/TrEMBL
PhenoGen Dera PhenoGen
PIRSF DeoC UniProtKB/TrEMBL
RatGTEx ENSRNOG00000007570 RatGTEx
SMART DeoC UniProtKB/TrEMBL
Superfamily-SCOP Aldolase UniProtKB/TrEMBL
UniProt A0A8I6A8V2_RAT UniProtKB/TrEMBL
  A0A8I6AAD4_RAT UniProtKB/TrEMBL
  A0A8I6AHH8_RAT UniProtKB/TrEMBL
  A6IMK8 ENTREZGENE, UniProtKB/TrEMBL
  F1M1H0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2016-03-15 Dera  deoxyribose-phosphate aldolase  Dera  deoxyribose-phosphate aldolase (putative)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-07-16 Dera  deoxyribose-phosphate aldolase (putative)  Dera-ps1  deoxyribose-phosphate aldolase, pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-06-26 Dera-ps1  deoxyribose-phosphate aldolase, pseudogene 1  Dera-ps1  2-deoxyribose-5-phosphate aldolase homolog (C. elegans), pseudogene 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2011-06-08 Dera-ps1  2-deoxyribose-5-phosphate aldolase homolog (C. elegans), pseudogene 1  Dera  2-deoxyribose-5-phosphate aldolase homolog (C. elegans)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-11-21 Dera  2-deoxyribose-5-phosphate aldolase homolog (C. elegans)  LOC690945  similar to Putative deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-01-09 LOC690945  similar to Putative deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)  LOC686184  similar to Putative deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)  Data merged from RGD:1585418 1643240 APPROVED
2006-11-20 LOC690945  similar to Putative deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-11-19 LOC686184  similar to Putative deoxyribose-phosphate aldolase (Phosphodeoxyriboaldolase) (Deoxyriboaldolase) (DERA)      Symbol and Name status set to provisional 70820 PROVISIONAL