Cwc15-ps3 (CWC15 spliceosome-associated protein, pseudogene 3) - Rat Genome Database

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Gene: Cwc15-ps3 (CWC15 spliceosome-associated protein, pseudogene 3) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Cwc15-ps3 (Ensembl: AABR07008904.1)
Name: CWC15 spliceosome-associated protein, pseudogene 3 (Ensembl:similar to RIKEN cDNA 0610040D20)
RGD ID: 1589753
Description: Orthologous to human CWC15 (CWC15 spliceosome associated protein homolog).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: LOC310177; similar to RIKEN cDNA 0610040D20; spliceosome-associated protein CWC15 homolog
RGD Orthologs
Alliance Genes
More Info homologs ...
Related Functional Gene: Cwc15  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.2276,016,636 - 76,017,401 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl276,016,684 - 76,017,358 (-)EnsemblmRatBN7.2 Ensembl
Rnor_6.0277,783,788 - 77,784,626 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0297,504,385 - 97,505,185 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4277,098,679 - 77,099,353 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera271,727,703 - 71,728,541 (-)NCBICelera
Cytogenetic Map2q22NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function
RNA binding  (IBA)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Cwc15-ps3
20 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
61355Bp36Blood pressure QTL 362.9blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)25873687102844969Rat
1302794Stl27Serum triglyceride level QTL 274.40.0001blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)225413423143657569Rat
1358894Kidm24Kidney mass QTL 244.03kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358899Kidm23Kidney mass QTL 233.88kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358901Cm38Cardiac mass QTL 382heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358904Cm39Cardiac mass QTL 392.26heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423157142209Rat
1358910Kidm27Kidney mass QTL 275.77kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358911Kidm28Kidney mass QTL 285.42kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)225413423157142209Rat
1358913Cm41Cardiac mass QTL 412.73heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358917Cm42Cardiac mass QTL 422.82heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)225413423203928301Rat
1358887Bw50Body weight QTL 502.39body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1358908Bw49Body weight QTL 493.36body mass (VT:0001259)body weight (CMO:0000012)225413652157142078Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)22691781781754745Rat
1354617Bp240Blood pressure QTL 2404arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)22691781781754745Rat
1354603Bp243Blood pressure QTL 2433.9arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)226917817127469484Rat
2290453Scl55Serum cholesterol level QTL 552.83blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)226917817136917119Rat
10755436Coatc8Coat color QTL 80.02431coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)23502311780023117Rat
61371Edpm1Estrogen-dependent pituitary mass QTL 140.05pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)23513484188029593Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)240067944102785628Rat
70174BpQTLCluster2Blood pressure QTL cluster 24.24arterial blood pressure trait (VT:2000000)absolute change in mean arterial blood pressure (CMO:0000533)240067944102785628Rat
2293835Kiddil5Kidney dilation QTL 53.8kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607157142209Rat
2293843Kiddil6Kidney dilation QTL 63.1kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)242804607182042367Rat
1298074Bp164Blood pressure QTL 1640.003arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
1298085Bp165Blood pressure QTL 1650.0006arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)242804607202447032Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)243154682202446871Rat
61467Bp14Blood pressure QTL 142.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)243154682202446871Rat
2293676Bmd19Bone mineral density QTL 1910.70.0001femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)243162366111362592Rat
2293682Bmd24Bone mineral density QTL 248.90.0001femur mineral mass (VT:0010011)cortical volumetric bone mineral density (CMO:0001730)243162366111362592Rat
2293671Bss44Bone structure and strength QTL 4410.970.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)243162366148478373Rat
631208Bw1Body weight QTL15.09mesenteric fat pad mass (VT:0010427)mesenteric fat pad weight to body weight ratio (CMO:0000654)24317101783575226Rat
1354601Slep1Serum leptin concentration QTL 15.39blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)243171017184114403Rat
631266Bp132Blood pressure QTL 1320.0005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)246123260202447032Rat
1331760Bp206Blood pressure QTL 2063.62454arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)256043031202447032Rat
1582246Cm60Cardiac mass QTL 605.8heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)25760561276539510Rat
1558648Smcn1Smooth muscle cell number QTL 10.039blood vessel smooth muscle cell quantity (VT:0010525)aorta smooth muscle cell count per unit vessel length (CMO:0001646)259134147127460910Rat
5684990Bmd82Bone mineral density QTL 822.8tibia mineral mass (VT:1000283)bone mineral content (CMO:0001554)259324377103795077Rat
5684996Bmd85Bone mineral density QTL 854.70.024tibia mineral mass (VT:1000283)bone mineral density (CMO:0001226)259324377103795077Rat
61438Cia7Collagen induced arthritis QTL 74.60.0001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)259324377141596857Rat
631500Bp99Blood pressure QTL 992.5arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)259324719102755241Rat
1578777Stresp15Stress response QTL 1520.05blood aldosterone amount (VT:0005346)plasma aldosterone level (CMO:0000551)259846005104846005Rat
2306903Bp336Blood pressure QTL 3360.01arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)264366971109366971Rat
1298080Bp163Blood pressure QTL 1630.02arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118275202447032Rat
1354648Bp239Blood pressure QTL 2390.001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)266118463226797303Rat
7411551Bw131Body weight QTL 13129.60.001body mass (VT:0001259)body weight gain (CMO:0000420)267942638112942638Rat
1558653Prcr1Prostate cancer resistance QTL 15prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)272532993157142209Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)27478666494359546Rat
1359034Bp274Blood pressure QTL 274arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)27478666494359546Rat
1354605Rf48Renal function QTL 482.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)274786664206665859Rat

Markers in Region
RH140131  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2811,306,816 - 11,308,072 (+)MAPPERmRatBN7.2
mRatBN7.2276,017,085 - 76,017,305 (+)MAPPERmRatBN7.2
Rnor_6.0277,784,250 - 77,784,469NCBIRnor6.0
Rnor_6.0812,995,548 - 12,996,803NCBIRnor6.0
Rnor_5.0812,940,894 - 12,942,149UniSTSRnor5.0
Rnor_5.0297,504,835 - 97,505,054UniSTSRnor5.0
RGSC_v3.4277,099,081 - 77,099,300UniSTSRGSC3.4
RGSC_v3.4811,249,612 - 11,250,867UniSTSRGSC3.4
Celera812,800,606 - 12,801,861UniSTS
Celera271,728,165 - 71,728,384UniSTS
RH 3.4 Map2500.1UniSTS
Cytogenetic Map8q11UniSTS
Cytogenetic Map2q22UniSTS
RH141000  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2276,016,721 - 76,017,269 (+)MAPPERmRatBN7.2
Rnor_6.0277,783,886 - 77,784,433NCBIRnor6.0
Rnor_5.0297,504,471 - 97,505,018UniSTSRnor5.0
RGSC_v3.4277,098,717 - 77,099,264UniSTSRGSC3.4
Celera271,727,801 - 71,728,348UniSTS
Cytogenetic Map2q22UniSTS
Cytogenetic Map8q11UniSTS


Expression


Sequence


Reference Sequences
RefSeq Acc Id: ENSRNOT00000030328   ⟹   ENSRNOP00000035810
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl276,016,684 - 76,017,358 (-)Ensembl
Rnor_6.0 Ensembl277,783,851 - 77,784,522 (-)Ensembl
RefSeq Acc Id: XM_039103562   ⟹   XP_038959490
RefSeq Status:
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2276,016,636 - 76,017,401 (-)NCBI
Protein Sequences
Protein RefSeqs XP_038959490 (Get FASTA)   NCBI Sequence Viewer  
Reference Sequences
RefSeq Acc Id: XP_038959490   ⟸   XM_039103562
- UniProtKB: D3ZS22 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000035810   ⟸   ENSRNOT00000030328

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZS22-F1-model_v2 AlphaFold D3ZS22 1-224 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589753 AgrOrtholog
BioCyc Gene G2FUF-53949 BioCyc
Ensembl Genes ENSRNOG00000025157 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein ENSRNOP00000035810 ENTREZGENE
  ENSRNOP00000035810.1 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000030328 ENTREZGENE
  ENSRNOT00000030328.3 UniProtKB/TrEMBL
InterPro Cwf_Cwc_15 UniProtKB/TrEMBL
NCBI Gene 310177 ENTREZGENE
PANTHER PTHR12718 UniProtKB/TrEMBL
Pfam Cwf_Cwc_15 UniProtKB/TrEMBL
PhenoGen Cwc15-ps3 PhenoGen
UniProt D3ZS22 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-07-12 Cwc15-ps3  CWC15 spliceosome-associated protein, pseudogene 3  LOC310177  similar to RIKEN cDNA 0610040D20  Name and Symbol and Type changed (type changed from [protein-coding] to [pseudo]) 629549 APPROVED
2006-11-19 LOC310177  similar to RIKEN cDNA 0610040D20      Symbol and Name status set to provisional 70820 PROVISIONAL