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Gene: Piga (phosphatidylinositol glycan anchor biosynthesis, class A) Rattus norvegicus

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Symbol:

Piga

Name:

phosphatidylinositol glycan anchor biosynthesis, class A

RGD ID:

1589723

Description:

Predicted to enable phosphatidylinositol N-acetylglucosaminyltransferase activity. Predicted to be involved in GPI anchor biosynthetic process. Predicted to act upstream of or within cellular response to leukemia inhibitory factor. Predicted to be located in endoplasmic reticulum membrane. Predicted to be part of glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex. Human ortholog(s) of this gene implicated in multiple congenital anomalies-hypotonia-seizures syndrome 2 and paroxysmal nocturnal hemoglobinuria. Orthologous to human PIGA (phosphatidylinositol glycan anchor biosynthesis class A); PARTICIPATES IN glycosylphosphatidylinositol anchor biosynthetic pathway; INTERACTS WITH 1,3-Propane sultone; 1,4-phenylenediamine; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein; phosphatidylinositol glycan, class A; phosphatidylinositol glycan, class A (mapped); phosphatidylinositol N-acetylglucosaminyltransferase subunit A; Piga_mapped

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	33,672,832 - 33,687,747 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	33,674,923 - 33,687,636 (-)	Ensembl				GRCr8
mRatBN7.2	X	30,043,033 - 30,055,861 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	30,042,343 - 30,055,804 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	31,082,324 - 31,095,044 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	34,512,908 - 34,525,604 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	30,706,657 - 30,719,377 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	31,786,823 - 31,799,751 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	31,786,194 - 31,799,560 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	32,160,574 - 32,173,353 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	50,797,413 - 50,812,217 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	30,389,874 - 30,399,559 (-)	NCBI		Celera
Cytogenetic Map	X	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal recessive congenital ichthyosis 4B (ISS)

generalized epilepsy (ISO)

genetic disease (ISO)

intellectual disability (ISO)

multiple congenital anomalies-hypotonia-seizures syndrome 2 (ISO)

NEURODEVELOPMENTAL DISORDER WITH EPILEPSY AND HEMOCHROMATOSIS (ISO)

Neurodevelopmental Disorders (ISO)

Occupational Diseases (ISO)

paroxysmal nocturnal hemoglobinuria (ISO)

Paroxysmal Nocturnal Hemoglobinuria 1 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(S)-nicotine (ISO)

1,2-dichloroethene (ISO)

1,3-Propane sultone (EXP)

1,4-phenylenediamine (EXP)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,4,3',4'-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-acetamidofluorene (EXP)

2-amino-2-deoxy-D-glucopyranose (ISO)

2-hydroxypropanoic acid (ISO)

4,4'-diaminodiphenylmethane (ISO)

4-nitroquinoline N-oxide (EXP,ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (EXP)

aldehydo-D-glucosamine (ISO)

aldehydo-D-glucose (ISO)

amiodarone (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

aristolochic acids (EXP)

Aroclor 1254 (ISO)

azathioprine (EXP)

benzo[a]pyrene (EXP,ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-D-glucosamine (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

cadmium atom (ISO)

cadmium dichloride (EXP,ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

CGP 52608 (ISO)

chlorambucil (EXP)

choline (ISO)

chromium(6+) (ISO)

cisplatin (EXP,ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

cyclophosphamide (EXP)

cyclosporin A (ISO)

D-glucose (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

dimethyl sulfoxide (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

ethyl methanesulfonate (EXP,ISO)

etoposide (ISO)

folic acid (ISO)

gentamycin (EXP)

glucose (ISO)

gold atom (ISO)

gold(0) (ISO)

isoprenaline (ISO)

L-methionine (ISO)

melphalan (EXP)

methyl methanesulfonate (EXP)

morphine (ISO)

N-acetyl-L-cysteine (ISO)

N-ethyl-N-nitrosourea (EXP,ISO)

N-methyl-N-nitrosourea (EXP)

nickel atom (ISO)

nicotine (ISO)

okadaic acid (ISO)

paracetamol (EXP,ISO)

potassium chromate (ISO)

propiconazole (ISO)

pyrene (EXP)

rac-lactic acid (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

tamoxifen (ISO)

temozolomide (EXP)

testosterone (ISO)

tetrachloromethane (EXP,ISO)

Thiotepa (EXP)

titanium dioxide (ISO)

trans-1,2-dichloroethene (ISO)

tributylstannane (EXP)

trichostatin A (ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

troglitazone (ISO)

urethane (EXP)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

biological_process (ND)

cellular response to leukemia inhibitory factor (IEA,ISO)

GPI anchor biosynthetic process (IBA,IEA,ISO)

lipid metabolic process (IEA)

Cellular Component

endoplasmic reticulum membrane (IEA,ISO)

glycosylphosphatidylinositol-N-acetylglucosaminyltransferase (GPI-GnT) complex (IBA,IEA,ISO)

membrane (IEA)

Molecular Function

glycosyltransferase activity (IEA)

phosphatidylinositol N-acetylglucosaminyltransferase activity (IBA,IEA)

protein binding (ISO)

transferase activity (IEA)

Molecular Pathway Annotations Click to see Annotation Detail View

glycosylphosphatidylinositol anchor biosynthetic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	The spectrum of PIG-A gene mutations in aplastic anemia/paroxysmal nocturnal hemoglobinuria (AA/PNH): a high incidence of multiple mutations and evidence of a mutational hot spot.	Mortazavi Y, etal., Blood. 2003 Apr 1;101(7):2833-41. Epub 2002 Nov 7.
3.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
4.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
5.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
6.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
7.	Comprehensive gene review and curation	RGD comprehensive gene curation

Additional References at PubMed

PMID:8611683	PMID:16162815	PMID:19946888	PMID:20439489	PMID:22923490	PMID:24449360	PMID:24574022	PMID:25868128	PMID:33198937

Genomics

Comparative Map Data

Piga
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	33,672,832 - 33,687,747 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	33,674,923 - 33,687,636 (-)	Ensembl				GRCr8
mRatBN7.2	X	30,043,033 - 30,055,861 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	30,042,343 - 30,055,804 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	31,082,324 - 31,095,044 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	34,512,908 - 34,525,604 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	30,706,657 - 30,719,377 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	31,786,823 - 31,799,751 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	31,786,194 - 31,799,560 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	32,160,574 - 32,173,353 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	50,797,413 - 50,812,217 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	30,389,874 - 30,399,559 (-)	NCBI		Celera
Cytogenetic Map	X	q14	NCBI

PIGA
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	15,319,451 - 15,335,554 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	15,319,452 - 15,335,554 (-)	Ensembl			hg38	GRCh38
GRCh37	X	15,337,573 - 15,353,676 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	15,247,499 - 15,263,581 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	X	19,453,077 - 19,469,182 (-)	NCBI		Celera
Cytogenetic Map	X	p22.2	NCBI
HuRef	X	13,096,081 - 13,112,522 (-)	NCBI		HuRef
CHM1_1	X	15,368,527 - 15,384,630 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	14,902,337 - 14,918,440 (-)	NCBI		T2T-CHM13v2.0

Piga
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	163,202,814 - 163,216,912 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	163,202,783 - 163,216,912 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	164,419,780 - 164,433,916 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	164,419,787 - 164,433,916 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	160,857,719 - 160,871,847 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	159,763,921 - 159,778,021 (+)	NCBI		MGSCv36	mm8
Celera	X	147,635,146 - 147,649,303 (+)	NCBI		Celera
Cytogenetic Map	X	F5	NCBI
cM Map	X	76.49	NCBI

Piga
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955519	2,852,555 - 2,867,600 (+)	Ensembl
ChiLan1.0	NW_004955519	2,852,605 - 2,865,848 (+)	NCBI	ChiLan1.0	ChiLan1.0

PIGA
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	17,118,790 - 17,135,672 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	17,122,457 - 17,139,351 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	7,946,158 - 7,962,320 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	15,228,881 - 15,244,949 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	15,228,881 - 15,244,949 (-)	Ensembl			panPan2	panpan1.1

PIGA
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	11,570,327 - 11,583,401 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	11,477,560 - 11,490,558 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	11,532,405 - 11,545,403 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	X	11,595,315 - 11,608,309 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	11,586,669 - 11,599,667 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	11,614,747 - 11,627,744 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Piga
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	4,730,960 - 4,747,006 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	4,730,961 - 4,746,985 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	4,730,955 - 4,746,958 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PIGA
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	11,871,750 - 11,886,438 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	11,871,746 - 11,886,519 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	12,832,314 - 12,847,100 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PIGA
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	13,787,658 - 13,803,575 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	13,787,646 - 13,803,405 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666056	15,624,328 - 15,640,151 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Piga
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624829	128,586 - 142,150 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624829	128,161 - 143,378 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Piga
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	24,995,938 - 25,008,826 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Piga
109 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	23
Count of miRNA genes:	19
Interacting mature miRNAs:	23
Transcripts:	ENSRNOT00000044103
Prediction methods:	Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	24470360	44931007	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	24470360	45082063	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	8111486	53111486	Rat

Markers in Region

RH135118

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	30,041,048 - 30,041,246 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	31,784,856 - 31,785,053	NCBI	Rnor6.0
Rnor_5.0	X	32,158,550 - 32,158,747	UniSTS	Rnor5.0
RGSC_v3.4	X	50,797,532 - 50,797,729	UniSTS	RGSC3.4
Celera	X	30,387,756 - 30,387,953	UniSTS
RH 3.4 Map	X	402.4	UniSTS
Cytogenetic Map	X	q21	UniSTS

BF387721

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	30,043,059 - 30,043,250 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	31,786,850 - 31,787,040	NCBI	Rnor6.0
Rnor_5.0	X	32,160,601 - 32,160,791	UniSTS	Rnor5.0
RGSC_v3.4	X	50,799,509 - 50,799,699	UniSTS	RGSC3.4
RGSC_v3.4	X	50,735,019 - 50,735,209	UniSTS	RGSC3.4
Celera	X	30,389,741 - 30,389,931	UniSTS
Celera	X	30,325,562 - 30,325,752	UniSTS
RH 3.4 Map	X	422.11	UniSTS
Cytogenetic Map	X	q21	UniSTS

PMC22111P1

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	30,052,270 - 30,052,889 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	31,796,063 - 31,796,681	NCBI	Rnor6.0
Rnor_5.0	X	32,169,814 - 32,170,432	UniSTS	Rnor5.0
RGSC_v3.4	X	50,808,722 - 50,809,340	UniSTS	RGSC3.4
Celera	X	30,398,954 - 30,399,572	UniSTS
Cytogenetic Map	X	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	355	192	11	144	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001108816	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401036	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256870	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256873	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773176	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773177	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773178	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773179	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773180	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099876	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099879	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099880	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099885	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280127	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280128	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280129	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280130	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280131	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280132	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280133	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001842611	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001842612	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005498007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005498008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005498009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005498010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000044103 ⟹ ENSRNOP00000045342

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	33,674,923 - 33,687,636 (-)	Ensembl
mRatBN7.2 Ensembl	X	30,042,385 - 30,055,804 (-)	Ensembl
Rnor_6.0 Ensembl	X	31,786,194 - 31,799,560 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000094241 ⟹ ENSRNOP00000084907

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	30,051,726 - 30,054,236 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102422 ⟹ ENSRNOP00000097683

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	30,050,122 - 30,055,712 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000106938 ⟹ ENSRNOP00000089686

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	33,674,923 - 33,684,768 (-)	Ensembl
mRatBN7.2 Ensembl	X	30,042,343 - 30,052,876 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107804 ⟹ ENSRNOP00000091008

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	33,674,923 - 33,684,830 (-)	Ensembl
mRatBN7.2 Ensembl	X	30,051,975 - 30,055,804 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108302 ⟹ ENSRNOP00000087487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	30,050,122 - 30,055,768 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118152 ⟹ ENSRNOP00000094569

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	30,042,351 - 30,055,804 (-)	Ensembl

RefSeq Acc Id:

NM_001108816 ⟹ NP_001102286

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,675,083 - 33,684,768 (-)	NCBI
mRatBN7.2	X	30,043,193 - 30,052,876 (-)	NCBI
Rnor_6.0	X	31,786,983 - 31,796,668 (-)	NCBI
Rnor_5.0	X	32,160,574 - 32,173,353 (-)	NCBI
RGSC_v3.4	X	50,797,413 - 50,812,217 (-)	RGD
Celera	X	30,389,874 - 30,399,559 (-)	NCBI

Sequence:

show sequence

ATGGCCAATAGAAGAGGAGGGACTGATTTGCTTAGTGGTATAATACCTGAACTCTGTCAGAAAT
ACCAAGAATTAAACTTCCTGATTGGAGGAGAGGGACCAAAGAGGATCATTTTGGAAGAAGTCCG
GGAGAGATACCAGCTGCACGACAGGGTGCAACTTTTGGGAGCTTTAGAACACAAGGATGTTAGA
AATGTCCTAGTTCAAGGACATATTTTTCTTAACACCTCCCTCACAGAAGCATTCTGCATGGCAA
TCGTGGAAGCCGCCAGTTGTGGTTTGCAGGTCGTCAGCACAAAGGTTGGTGGGATTCCTGAAGT
CCTTCCAGAAAATCTTATTATTTTATGTGAGCCTTCAGTAAAATCTTTGTGTGAAGGTCTGGAA
AAAGCCATTTTCCAAGTGAAGTCGGGGACATTGCCTGCTCCAGAAAATATCCACAATGTAGTGA
AGACTTTCTACACCTGGCGGAATGTGGCAGAGAGAACTGAAAAAGTGTATGAGCGAGTGTCAAA
GGAATCCGTGTTGCCAATGCACAAGAGATTGGACAGGCTCATCTCTCACTGTGGCCCAGTGACA
GGCTACATTTTTGCTTTGCTGGCCGTGCTCAGCTATCTCTTCCTCATTTTCCTGCAATGGATGA
CTCCAGACTCTGTCATTGATGTTGCAATAGATGCTACTGGGCCAAGGAGAGCCTGGACTCATCA
ATGGCCTCGTGATAAGAAAAGAGATGAGAATGATAAAGTATCCAAAAGCAGGTAG

hide sequence

RefSeq Acc Id:

NM_001401036 ⟹ NP_001387965

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,674,923 - 33,687,617 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,055,725 (-)	NCBI

RefSeq Acc Id:

XM_006256870 ⟹ XP_006256932

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,011 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,055,123 (-)	NCBI
Rnor_6.0	X	31,786,823 - 31,799,517 (-)	NCBI
Rnor_5.0	X	32,160,574 - 32,173,353 (-)	NCBI

Sequence:

show sequence

ACGTGTCTCGTCTGTCCTTTCCAACGTTCTCGGTCCCTTCTGGACGGGGTTGGGCCGTTCTTAG
AGGAGCGTGGCTGGCTGTGGAGGAGGTGAAGCCTACCCTACGGGAGGCCCAGAAGTCAGGTGCG
AGGGTCTCCGTAGTCAAATGGGGCTATGGGTGCCTTGAGGGTTGGAGCTGGTTCCTAGGCTGAG
TTTAGTAGAGCGAGGGATTGGAATCTTAGGACGTTTTTCCGACTCCCTTTGCATATGGCCAGAT
TTTGCCTCATCCTGGGGTGGAGGCTCATAGACCCGGGCTGACCCTCTTTGGCTCTAGTGCACCC
GAGATGCCTCTCAGGGAGTCGTGCCTTGGGACTGGATTAAAGTATGATTCTCTTGATTTCTCAG
CCCCGTCCGAGCTCCCTCTAAGGATCCTCAGGAGCTTCTACTAATAAGGGAGTTTACTGGCCAT
GACTGAGAATTTTGAGGACTTCTTGACTTTGTCATTTACGTTGCTTGAGTAGGGACGTTTTACA
GTTTGCTTAACATGTATCGCTCGGAGAGAGAATTCACCAGATTTTACAGCCTCTCTTCACTTAT
AGAAGCCAAGATTCAGTGAGTATGCAATATGTTGAGCTTTGACCCAATAAAGATTTTAGATATA
ATAACCTGGTGGCAGGCTGACTCAGAACATTGGAGGTCGGTGATGGGTTTTCATTTGGTTCATT
ATTTCTGCTCTCCTTGTCATTCACTTCTTAAAACTAAATAGGACTAAGGTCCAGGTTTAGATGA
CACATCACAGTAGAACAGCATTAGCCACTGAGGCTTTGCTTTCTTTTGCAAACTTGATATTTTC
TTGCTTTCATTCTTTGTTTACGTATTGGTTGTAAATTTGATCATCTCTCTACTTTTTTCCAGTT
TATGTGTCAGGGTGCTCTCCATGTCTTAGCTGCCCTGGAACCCTCAATCATTTGATCCCTCAGC
ACATGCTTCCTTCTTGCCTCCTCACTCACTCGGTATTAATGAGACTATTTTAAATGTAGATGAA
TTTGTTGGACAAAGTCAACACATACAGTTGCCAGTGAGACCTGAAACTCAGAGTTTAGGATAGT
AACTCTTGATTGAGTTCTTTGTAGCCTTATAGATCTCAACTAAGATAGATTTTTTGCCAGATCT
CCAAAGCTATGGCATTAAAAGTTTAAGCATAAATAGAATGGAATATTGAATGAACACTTCATAC
CAGCATAGGTTTAGGGAACTCCTAAAGGAAACATTTCCTACCTTTAGATGTAGGAAAGAGCCCA
CATACATACATAGCCCGTGTCCCACTCCATTTCCTTTCAGAGTCCACACTGAAAGGGCACTTGT
AGAGGAAAGACCTACATAAGTAAAAGAAGGATCCCAAAAAGAGAAGGGAGCAGTTTGAGTATAA
CTACCCTTGAATAAGGAAGGAGAAACGGGATTGTCTGCAGCATGAGCTCCGGGTAACACTTGAA
GAGAGTGTTCTTAAAAAGTGACAGAAGACACATTTCTTAACAGGCTTGCTCTGAGAACTGATGC
GTGAACCACCTCAGCATGGCCAATAGAAGAGGAGGTGGGCAAGGCCAGCCTCCTTCAGTGTCTC
CTTCCCCCGGTAGCTCCGGAAGTCTTTCCACTGATAGGACCTGCACTCATAATATATGCATGGT
GTCTGACTTTTTCTACCCAAACATGGGAGGTGTGGAAAGCCACATTTACCAGCTCTCTCAGTGC
CTCATTGAGAGGGGGCACAAAGTCATAACTGTCACCCATGCTTATGGAAATCGAAAGGGCGTCC
GTTACCTCACCAATGGCCTCAAAGTTTACTATTTGCCTCTGAGAGTCATGTACAACCAATCTAC
AGCCACGACTCTCTTTCACAGTCTGCCATTGCTCAGGTACATATTTGTTCGGGAGAGAATTACG
ATAATCCATTCCCACAGTTCTTTCTCTGCCATGGCCCATGATGCTCTCTTCCACGCCAAGACAA
TGGGGCTTCAGACAGTCTTCACAGACCATTCCCTTTTTGGATTTGCTGATGTCAGCTCGGTGCT
TACAAACAAGCTTCTTACTGTGTCTCTTTGTGACACAAACCACATCATTTGTGTCTCTTACACT
AGTAAGGAGAACACTGTACTCAGAGCAGCACTGAATCCTGAAATAGTGTCCGTCATTCCTAACG
CTGTAGATCCTACTGACTTCACTCCAGAACCATTTAGGAGGCATGATAGTGTAATAACTGTTGT
TGTTGTCAGCAGACTTGTTTACAGAAAAGGGACTGATTTGCTTAGTGGTATAATACCTGAACTC
TGTCAGAAATACCAAGAATTAAACTTCCTGATTGGAGGAGAGGGACCAAAGAGGATCATTTTGG
AAGAAGTCCGGGAGAGATACCAGCTGCACGACAGGGTGCAACTTTTGGGAGCTTTAGAACACAA
GGATGTTAGAAATGTCCTAGTTCAAGGACATATTTTTCTTAACACCTCCCTCACAGAAGCATTC
TGCATGGCAATCGTGGAAGCCGCCAGTTGTGGTTTGCAGGTCGTCAGCACAAAGGTTGGTGGGA
TTCCTGAAGTCCTTCCAGAAAATCTTATTATTTTATGTGAGCCTTCAGTAAAATCTTTGTGTGA
AGGTCTGGAAAAAGCCATTTTCCAAGTGAAGTCGGGGACATTGCCTGCTCCAGAAAATATCCAC
AATGTAGTGAAGACTTTCTACACCTGGCGGAATGTGGCAGAGAGAACTGAAAAAGTGTATGAGC
GAGTGTCAAAGGAATCCGTGTTGCCAATGCACAAGAGATTGGACAGGCTCATCTCTCACTGTGG
CCCAGTGACAGGCTACATTTTTGCTTTGCTGGCCGTGCTCAGCTATCTCTTCCTCATTTTCCTG
CAATGGATGACTCCAGACTCTGTCATTGATGTTGCAATAGATGCTACTGGGCCAAGGAGAGCCT
GGACTCATCAATGGCCTCGTGATAAGAAAAGAGATGAGAATGATAAAGTATCCAAAAGCAGGTA
GAAGCAAGCCCAAATTAACAAGTCCTATTAGATACTTGCAATAGTCCTGTTAGCATTTGAAAAT
AATTTTGCTCATTGTTTTTGGGTTTTCGAGTTGGTTTTGTAAATTATGCTACCTCTGTATCGTT
CACTTTTGTTTTTGAAAAAAGATTCTTATGCAA

hide sequence

RefSeq Acc Id:

XM_006256873 ⟹ XP_006256935

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,698 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,055,861 (-)	NCBI
Rnor_6.0	X	31,786,823 - 31,799,751 (-)	NCBI
Rnor_5.0	X	32,160,574 - 32,173,353 (-)	NCBI

Sequence:

show sequence

CTTAGGAGACATGCTCCTGCGCTCGCTGACGCTACACTCCCTCGTTAGACAGTAGGGGATGACT
GGGCGTCTCTCTTCCACGTGAATTCAGAACCTCTGTGCGATTGGCTACTACGGGGGCGCGGCGC
TCGGGTCGCGGACGCTTCTGATTGGTGCTTTGGAGCAGTGGGGCGGGATTCTGCTTACAGCCGC
GGGAGGTCCGGACAGTGGCGGCCATGGGACTCACGGGTGACAGAAGACACATTTCTTAACAGGC
TTGCTCTGAGAACTGATGCGTGAACCACCTCAGCATGGCCAATAGAAGAGGAGGTGGGCAAGGC
CAGCCTCCTTCAGTGTCTCCTTCCCCCGGTAGCTCCGGAAGTCTTTCCACTGATAGGACCTGCA
CTCATAATATATGCATGGTGTCTGACTTTTTCTACCCAAACATGGGAGGTGTGGAAAGCCACAT
TTACCAGCTCTCTCAGTGCCTCATTGAGAGGGGGCACAAAGTCATAACTGTCACCCATGCTTAT
GGAAATCGAAAGGGCGTCCGTTACCTCACCAATGGCCTCAAAGTTTACTATTTGCCTCTGAGAG
TCATGTACAACCAATCTACAGCCACGACTCTCTTTCACAGTCTGCCATTGCTCAGGTACATATT
TGTTCGGGAGAGAATTACGATAATCCATTCCCACAGTTCTTTCTCTGCCATGGCCCATGATGCT
CTCTTCCACGCCAAGACAATGGGGCTTCAGACAGTCTTCACAGACCATTCCCTTTTTGGATTTG
CTGATGTCAGCTCGGTGCTTACAAACAAGCTTCTTACTGTGTCTCTTTGTGACACAAACCACAT
CATTTGTGTCTCTTACACTAGTAAGGAGAACACTGTACTCAGAGCAGCACTGAATCCTGAAATA
GTGTCCGTCATTCCTAACGCTGTAGATCCTACTGACTTCACTCCAGAACCATTTAGGAGGCATG
ATAGTGTAATAACTGTTGTTGTTGTCAGCAGACTTGTTTACAGAAAAGGGACTGATTTGCTTAG
TGGTATAATACCTGAACTCTGTCAGAAATACCAAGAATTAAACTTCCTGATTGGAGGAGAGGGA
CCAAAGAGGATCATTTTGGAAGAAGTCCGGGAGAGATACCAGCTGCACGACAGGGTGCAACTTT
TGGGAGCTTTAGAACACAAGGATGTTAGAAATGTCCTAGTTCAAGGACATATTTTTCTTAACAC
CTCCCTCACAGAAGCATTCTGCATGGCAATCGTGGAAGCCGCCAGTTGTGGTTTGCAGGTCGTC
AGCACAAAGGTTGGTGGGATTCCTGAAGTCCTTCCAGAAAATCTTATTATTTTATGTGAGCCTT
CAGTAAAATCTTTGTGTGAAGGTCTGGAAAAAGCCATTTTCCAAGTGAAGTCGGGGACATTGCC
TGCTCCAGAAAATATCCACAATGTAGTGAAGACTTTCTACACCTGGCGGAATGTGGCAGAGAGA
ACTGAAAAAGTGTATGAGCGAGTGTCAAAGGAATCCGTGTTGCCAATGCACAAGAGATTGGACA
GGCTCATCTCTCACTGTGGCCCAGTGACAGGCTACATTTTTGCTTTGCTGGCCGTGCTCAGCTA
TCTCTTCCTCATTTTCCTGCAATGGATGACTCCAGACTCTGTCATTGATGTTGCAATAGATGCT
ACTGGGCCAAGGAGAGCCTGGACTCATCAATGGCCTCGTGATAAGAAAAGAGATGAGAATGATA
AAGTATCCAAAAGCAGGTAGAAGCAAGCCCAAATTAACAAGTCCTATTAGATACTTGCAATAGT
CCTGTTAGCATTTGAAAATAATTTTGCTCATTGTTTTTGGGTTTTCGAGTTGGTTTTGTAAATT
ATGCTACCTCTGTATCGTTCACTTTTGTTTTTGAAAAAAGATTCTTATGCAA

hide sequence

RefSeq Acc Id:

XM_006256876 ⟹ XP_006256938

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,590 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,055,715 (-)	NCBI
Rnor_6.0	X	31,786,823 - 31,799,517 (-)	NCBI
Rnor_5.0	X	32,160,574 - 32,173,353 (-)	NCBI

Sequence:

show sequence

ACGTGTCTCGTCTGTCCTTTCCAACGTTCTCGGTCCCTTCTGGACGGGGTTGGGCCGTTCTTAG
AGGAGCGTGGCTGGCTGTGGAGGAGGTGAAGCCTACCCTACGGGAGGCCCAGAAGTCAGGTGAC
AGAAGACACATTTCTTAACAGGCTTGCTCTGAGAACTGATGCGTGAACCACCTCAGCATGGCCA
ATAGAAGAGGAGGTGGGCAAGGCCAGCCTCCTTCAGTGTCTCCTTCCCCCGGTAGCTCCGGAAG
TCTTTCCACTGATAGGACCTGCACTCATAATATATGCATGGTGTCTGACTTTTTCTACCCAAAC
ATGGGAGGTGTGGAAAGCCACATTTACCAGCTCTCTCAGTGCCTCATTGAGAGGGGGCACAAAG
TCATAACTGTCACCCATGCTTATGGAAATCGAAAGGGCGTCCGTTACCTCACCAATGGCCTCAA
AGTTTACTATTTGCCTCTGAGAGTCATGTACAACCAATCTACAGCCACGACTCTCTTTCACAGT
CTGCCATTGCTCAGGTACATATTTGTTCGGGAGAGAATTACGATAATCCATTCCCACAGTTCTT
TCTCTGCCATGGCCCATGATGCTCTCTTCCACGCCAAGACAATGGGGCTTCAGACAGTCTTCAC
AGACCATTCCCTTTTTGGATTTGCTGATGTCAGCTCGGTGCTTACAAACAAGCTTCTTACTGTG
TCTCTTTGTGACACAAACCACATCATTTGTGTCTCTTACACTAGTAAGGAGAACACTGTACTCA
GAGCAGCACTGAATCCTGAAATAGTGTCCGTCATTCCTAACGCTGTAGATCCTACTGACTTCAC
TCCAGAACCATTTAGGAGGCATGATAGTGTAATAACTGTTGTTGTTGTCAGCAGACTTGTTTAC
AGAAAAGGGACTGATTTGCTTAGTGGTATAATACCTGAACTCTGTCAGAAATACCAAGAATTAA
ACTTCCTGATTGGAGGAGAGGGACCAAAGAGGATCATTTTGGAAGAAGTCCGGGAGAGATACCA
GCTGCACGACAGGGTGCAACTTTTGGGAGCTTTAGAACACAAGGATGTTAGAAATGTCCTAGTT
CAAGGACATATTTTTCTTAACACCTCCCTCACAGAAGCATTCTGCATGGCAATCGTGGAAGCCG
CCAGTTGTGGTTTGCAGGTCGTCAGCACAAAGGTTGGTGGGATTCCTGAAGTCCTTCCAGAAAA
TCTTATTATTTTATGTGAGCCTTCAGTAAAATCTTTGTGTGAAGGTCTGGAAAAAGCCATTTTC
CAAGTGAAGTCGGGGACATTGCCTGCTCCAGAAAATATCCACAATGTAGTGAAGACTTTCTACA
CCTGGCGGAATGTGGCAGAGAGAACTGAAAAAGTGTATGAGCGAGTGTCAAAGGAATCCGTGTT
GCCAATGCACAAGAGATTGGACAGGCTCATCTCTCACTGTGGCCCAGTGACAGGCTACATTTTT
GCTTTGCTGGCCGTGCTCAGCTATCTCTTCCTCATTTTCCTGCAATGGATGACTCCAGACTCTG
TCATTGATGTTGCAATAGATGCTACTGGGCCAAGGAGAGCCTGGACTCATCAATGGCCTCGTGA
TAAGAAAAGAGATGAGAATGATAAAGTATCCAAAAGCAGGTAGAAGCAAGCCCAAATTAACAAG
TCCTATTAGATACTTGCAATAGTCCTGTTAGCATTTGAAAATAATTTTGCTCATTGTTTTTGGG
TTTTCGAGTTGGTTTTGTAAATTATGCTACCTCTGTATCGTTCACTTTTGTTTTTGAAAAAAGA
TTCTTATGCAA

hide sequence

RefSeq Acc Id:

XM_039099874 ⟹ XP_038955802

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,746 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,055,855 (-)	NCBI

RefSeq Acc Id:

XM_039099875 ⟹ XP_038955803

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,611 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,055,727 (-)	NCBI

RefSeq Acc Id:

XM_039099876 ⟹ XP_038955804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,747 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,055,860 (-)	NCBI

RefSeq Acc Id:

XM_039099879 ⟹ XP_038955807

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,616 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,055,738 (-)	NCBI

RefSeq Acc Id:

XM_039099880 ⟹ XP_038955808

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,686,001 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,054,110 (-)	NCBI

RefSeq Acc Id:

XM_039099883 ⟹ XP_038955811

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,684,194 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,052,302 (-)	NCBI

RefSeq Acc Id:

XM_039099885 ⟹ XP_038955813

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,684,525 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,052,654 (-)	NCBI

RefSeq Acc Id:

XM_039099886 ⟹ XP_038955814

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,745 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,055,725 (-)	NCBI

RefSeq Acc Id:

XM_039099888 ⟹ XP_038955816

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,653 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,055,861 (-)	NCBI

RefSeq Acc Id:

XM_039099889 ⟹ XP_038955817

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,513 (-)	NCBI
mRatBN7.2	X	30,043,033 - 30,055,713 (-)	NCBI

RefSeq Acc Id:

XM_063280127 ⟹ XP_063136197

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,484 (-)	NCBI

RefSeq Acc Id:

XM_063280128 ⟹ XP_063136198

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,746 (-)	NCBI

RefSeq Acc Id:

XM_063280129 ⟹ XP_063136199

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,746 (-)	NCBI

RefSeq Acc Id:

XM_063280130 ⟹ XP_063136200

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,675,213 - 33,687,746 (-)	NCBI

RefSeq Acc Id:

XM_063280131 ⟹ XP_063136201

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,679,326 - 33,687,747 (-)	NCBI

RefSeq Acc Id:

XM_063280132 ⟹ XP_063136202

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,745 (-)	NCBI

RefSeq Acc Id:

XM_063280133 ⟹ XP_063136203

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,672,832 - 33,687,745 (-)	NCBI

RefSeq Acc Id:

XR_005498007

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,679,301 - 33,687,747 (-)	NCBI
mRatBN7.2	X	30,047,411 - 30,055,725 (-)	NCBI

RefSeq Acc Id:

XR_005498008

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,679,326 - 33,687,747 (-)	NCBI
mRatBN7.2	X	30,047,436 - 30,055,725 (-)	NCBI

RefSeq Acc Id:

XR_005498009

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,679,301 - 33,687,747 (-)	NCBI
mRatBN7.2	X	30,047,411 - 30,055,725 (-)	NCBI

RefSeq Acc Id:

XR_005498010

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	33,679,305 - 33,687,747 (-)	NCBI
mRatBN7.2	X	30,047,415 - 30,055,725 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102286	(Get FASTA)	NCBI Sequence Viewer
	NP_001387965	(Get FASTA)	NCBI Sequence Viewer
	XP_006256932	(Get FASTA)	NCBI Sequence Viewer
	XP_006256935	(Get FASTA)	NCBI Sequence Viewer
	XP_006256938	(Get FASTA)	NCBI Sequence Viewer
	XP_038955802	(Get FASTA)	NCBI Sequence Viewer
	XP_038955803	(Get FASTA)	NCBI Sequence Viewer
	XP_038955804	(Get FASTA)	NCBI Sequence Viewer
	XP_038955807	(Get FASTA)	NCBI Sequence Viewer
	XP_038955808	(Get FASTA)	NCBI Sequence Viewer
	XP_038955811	(Get FASTA)	NCBI Sequence Viewer
	XP_038955813	(Get FASTA)	NCBI Sequence Viewer
	XP_038955814	(Get FASTA)	NCBI Sequence Viewer
	XP_038955816	(Get FASTA)	NCBI Sequence Viewer
	XP_038955817	(Get FASTA)	NCBI Sequence Viewer
	XP_063136197	(Get FASTA)	NCBI Sequence Viewer
	XP_063136198	(Get FASTA)	NCBI Sequence Viewer
	XP_063136199	(Get FASTA)	NCBI Sequence Viewer
	XP_063136200	(Get FASTA)	NCBI Sequence Viewer
	XP_063136201	(Get FASTA)	NCBI Sequence Viewer
	XP_063136202	(Get FASTA)	NCBI Sequence Viewer
	XP_063136203	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL90522	(Get FASTA)	NCBI Sequence Viewer
	EDL90523	(Get FASTA)	NCBI Sequence Viewer
	EDL90524	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000045342
	ENSRNOP00000045342.5
	ENSRNOP00000089686.1
	ENSRNOP00000091008
	ENSRNOP00000091008.2

RefSeq Acc Id:	NP_001102286 ⟸ NM_001108816
- Peptide Label:	isoform 2
- UniProtKB:	A6K2K6 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANRRGGTDLLSGIIPELCQKYQELNFLIGGEGPKRIILEEVRERYQLHDRVQLLGALEHKDVR NVLVQGHIFLNTSLTEAFCMAIVEAASCGLQVVSTKVGGIPEVLPENLIILCEPSVKSLCEGLE KAIFQVKSGTLPAPENIHNVVKTFYTWRNVAERTEKVYERVSKESVLPMHKRLDRLISHCGPVT GYIFALLAVLSYLFLIFLQWMTPDSVIDVAIDATGPRRAWTHQWPRDKKRDENDKVSKSR hide sequence

RefSeq Acc Id:	XP_006256935 ⟸ XM_006256873
- Peptide Label:	isoform X1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANRRGGGQGQPPSVSPSPGSSGSLSTDRTCTHNICMVSDFFYPNMGGVESHIYQLSQCLIERG HKVITVTHAYGNRKGVRYLTNGLKVYYLPLRVMYNQSTATTLFHSLPLLRYIFVRERITIIHSH SSFSAMAHDALFHAKTMGLQTVFTDHSLFGFADVSSVLTNKLLTVSLCDTNHIICVSYTSKENT VLRAALNPEIVSVIPNAVDPTDFTPEPFRRHDSVITVVVVSRLVYRKGTDLLSGIIPELCQKYQ ELNFLIGGEGPKRIILEEVRERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIV EAASCGLQVVSTKVGGIPEVLPENLIILCEPSVKSLCEGLEKAIFQVKSGTLPAPENIHNVVKT FYTWRNVAERTEKVYERVSKESVLPMHKRLDRLISHCGPVTGYIFALLAVLSYLFLIFLQWMTP DSVIDVAIDATGPRRAWTHQWPRDKKRDENDKVSKSR hide sequence

RefSeq Acc Id:	XP_006256938 ⟸ XM_006256876
- Peptide Label:	isoform X1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANRRGGGQGQPPSVSPSPGSSGSLSTDRTCTHNICMVSDFFYPNMGGVESHIYQLSQCLIERG HKVITVTHAYGNRKGVRYLTNGLKVYYLPLRVMYNQSTATTLFHSLPLLRYIFVRERITIIHSH SSFSAMAHDALFHAKTMGLQTVFTDHSLFGFADVSSVLTNKLLTVSLCDTNHIICVSYTSKENT VLRAALNPEIVSVIPNAVDPTDFTPEPFRRHDSVITVVVVSRLVYRKGTDLLSGIIPELCQKYQ ELNFLIGGEGPKRIILEEVRERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIV EAASCGLQVVSTKVGGIPEVLPENLIILCEPSVKSLCEGLEKAIFQVKSGTLPAPENIHNVVKT FYTWRNVAERTEKVYERVSKESVLPMHKRLDRLISHCGPVTGYIFALLAVLSYLFLIFLQWMTP DSVIDVAIDATGPRRAWTHQWPRDKKRDENDKVSKSR hide sequence

RefSeq Acc Id:	XP_006256932 ⟸ XM_006256870
- Peptide Label:	isoform X1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)
- Sequence:	show sequence MANRRGGGQGQPPSVSPSPGSSGSLSTDRTCTHNICMVSDFFYPNMGGVESHIYQLSQCLIERG HKVITVTHAYGNRKGVRYLTNGLKVYYLPLRVMYNQSTATTLFHSLPLLRYIFVRERITIIHSH SSFSAMAHDALFHAKTMGLQTVFTDHSLFGFADVSSVLTNKLLTVSLCDTNHIICVSYTSKENT VLRAALNPEIVSVIPNAVDPTDFTPEPFRRHDSVITVVVVSRLVYRKGTDLLSGIIPELCQKYQ ELNFLIGGEGPKRIILEEVRERYQLHDRVQLLGALEHKDVRNVLVQGHIFLNTSLTEAFCMAIV EAASCGLQVVSTKVGGIPEVLPENLIILCEPSVKSLCEGLEKAIFQVKSGTLPAPENIHNVVKT FYTWRNVAERTEKVYERVSKESVLPMHKRLDRLISHCGPVTGYIFALLAVLSYLFLIFLQWMTP DSVIDVAIDATGPRRAWTHQWPRDKKRDENDKVSKSR hide sequence

Ensembl Acc Id:

ENSRNOP00000045342 ⟸ ENSRNOT00000044103

RefSeq Acc Id:	XP_038955816 ⟸ XM_039099888
- Peptide Label:	isoform X5
- UniProtKB:	A6K2K6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955804 ⟸ XM_039099876
- Peptide Label:	isoform X1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955802 ⟸ XM_039099874
- Peptide Label:	isoform X1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955807 ⟸ XM_039099879
- Peptide Label:	isoform X1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955803 ⟸ XM_039099875
- Peptide Label:	isoform X1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955814 ⟸ XM_039099886
- Peptide Label:	isoform X5
- UniProtKB:	A6K2K6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955817 ⟸ XM_039099889
- Peptide Label:	isoform X5
- UniProtKB:	A6K2K6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955808 ⟸ XM_039099880
- Peptide Label:	isoform X1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955813 ⟸ XM_039099885
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038955811 ⟸ XM_039099883
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000089686 ⟸ ENSRNOT00000106938

Ensembl Acc Id:

ENSRNOP00000097683 ⟸ ENSRNOT00000102422

Ensembl Acc Id:

ENSRNOP00000091008 ⟸ ENSRNOT00000107804

Ensembl Acc Id:

ENSRNOP00000094569 ⟸ ENSRNOT00000118152

Ensembl Acc Id:

ENSRNOP00000084907 ⟸ ENSRNOT00000094241

Ensembl Acc Id:

ENSRNOP00000087487 ⟸ ENSRNOT00000108302

RefSeq Acc Id:	NP_001387965 ⟸ NM_001401036
- Peptide Label:	isoform 1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136199 ⟸ XM_063280129
- Peptide Label:	isoform X1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136198 ⟸ XM_063280128
- Peptide Label:	isoform X1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136203 ⟸ XM_063280133
- Peptide Label:	isoform X5
- UniProtKB:	A6K2K6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136202 ⟸ XM_063280132
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063136197 ⟸ XM_063280127
- Peptide Label:	isoform X1
- UniProtKB:	D4AAY7 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063136200 ⟸ XM_063280130
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063136201 ⟸ XM_063280131
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AMH9 (UniProtKB/TrEMBL)

Protein Domains

PIGA GPI anchor biosynthesis

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4AAY7-F1-model_v2	AlphaFold	D4AAY7	1-485	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701795

Promoter ID:

EPDNEW_R12319

Type:

single initiation site

Name:

Piga_1

Description:

phosphatidylinositol glycan anchor biosynthesis, class A

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	31,799,546 - 31,799,606	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589723	AgrOrtholog
BioCyc Gene	G2FUF-2594	BioCyc
Ensembl Genes	ENSRNOG00000003554	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000044103	ENTREZGENE
	ENSRNOT00000044103.7	UniProtKB/TrEMBL
	ENSRNOT00000106938.2	UniProtKB/TrEMBL
	ENSRNOT00000107804	ENTREZGENE
	ENSRNOT00000107804.2	UniProtKB/TrEMBL
Gene3D-CATH	Glycogen Phosphorylase B	UniProtKB/TrEMBL
InterPro	Glyco_trans_1	UniProtKB/TrEMBL
	PIG-A/GPI3	UniProtKB/TrEMBL
	PIGA_GPI_anchor_biosynthesis	UniProtKB/TrEMBL
KEGG Report	rno:363464	UniProtKB/TrEMBL
NCBI Gene	363464	ENTREZGENE
PANTHER	N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL BIOSYNTHETIC PROTEIN	UniProtKB/TrEMBL
	PHOSPHATIDYLINOSITOL N-ACETYLGLUCOSAMINYLTRANSFERASE SUBUNIT A	UniProtKB/TrEMBL
Pfam	Glyco_trans_1_4	UniProtKB/TrEMBL
	Glycos_transf_1	UniProtKB/TrEMBL
	PIGA	UniProtKB/TrEMBL
PhenoGen	Piga	PhenoGen
RatGTEx	ENSRNOG00000003554	RatGTEx
Superfamily-SCOP	UDP-Glycosyltransferase/glycogen phosphorylase	UniProtKB/TrEMBL
UniProt	A0A8I6A8P6_RAT	UniProtKB/TrEMBL
	A0A8I6ADP6_RAT	UniProtKB/TrEMBL
	A0A8I6AMH9	ENTREZGENE
	A6K2K6	ENTREZGENE, UniProtKB/TrEMBL
	A6K2K7_RAT	UniProtKB/TrEMBL
	A6K2K8_RAT	UniProtKB/TrEMBL
	D4AAY7	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Piga	phosphatidylinositol glycan anchor biosynthesis, class A	Piga	phosphatidylinositol glycan, class A	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2007-04-13		phosphatidylinositol glycan, class A	Piga	phosphatidylinositol glycan, class A (mapped)	Name updated	737654	APPROVED
2007-04-11	Piga	phosphatidylinositol glycan, class A (mapped)	Piga_mapped	phosphatidylinositol glycan, class A (mapped)	Data merged from RGD:3327	737654	APPROVED
2006-11-19	Piga	phosphatidylinositol glycan, class A (mapped)			Symbol and Name status set to provisional	70820	PROVISIONAL
2005-11-17	Piga_mapped	phosphatidylinositol glycan, class A (mapped)	Piga	phosphatidylinositol glycan, class A	Symbol and Name updated	1556543	APPROVED
2002-06-10	Piga	Phosphatidylinositol glycan, class A (paroxysmal nocturnal hemoglobinuria) = N-acetylglucosaminyl-phosphatidylinositol biosynthetic protein			Symbol and Name status set to approved	70586	APPROVED

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MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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