Foxc1 (forkhead box C1) - Rat Genome Database

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Gene: Foxc1 (forkhead box C1) Rattus norvegicus
Analyze
Symbol: Foxc1
Name: forkhead box C1
RGD ID: 1589718
Description: Predicted to enable several functions, including DNA binding activity; DNA-binding transcription activator activity, RNA polymerase II-specific; and promoter-specific chromatin binding activity. Predicted to be involved in several processes, including cell surface receptor signaling pathway; positive regulation of cell differentiation; and regulation of gene expression. Predicted to act upstream of or within several processes, including cell surface receptor signaling pathway; circulatory system development; and collagen fibril organization. Predicted to be located in cytosol; heterochromatin; and nucleoplasm. Human ortholog(s) of this gene implicated in Axenfeld-Rieger syndrome; Axenfeld-Rieger syndrome type 3; anterior segment dysgenesis 3; and glaucoma. Orthologous to human FOXC1 (forkhead box C1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3-chloropropane-1,2-diol; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: forkhead box protein C1; LOC364706; similar to forkhead box C1
RGD Orthologs
Human
Mouse
Bonobo
Dog
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81732,840,119 - 32,844,100 (-)NCBIGRCr8
mRatBN7.21732,631,379 - 32,635,361 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1732,633,142 - 32,634,803 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1732,479,163 - 32,483,145 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01734,082,977 - 34,086,959 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01732,474,984 - 32,478,967 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01733,947,501 - 33,951,484 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1733,947,506 - 33,951,484 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01735,833,707 - 35,837,690 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41739,026,186 - 39,030,163 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1732,190,633 - 32,194,475 (-)NCBICelera
Cytogenetic Map17p12NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2-methylcholine  (ISO)
3-chloropropane-1,2-diol  (EXP)
4,4'-sulfonyldiphenol  (ISO)
5-aza-2'-deoxycytidine  (ISO)
5-fluorouracil  (ISO)
6-propyl-2-thiouracil  (EXP)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
antirheumatic drug  (ISO)
atrazine  (ISO)
benzalkonium chloride  (ISO)
benzo[a]pyrene  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
cadmium dichloride  (EXP)
calcitriol  (ISO)
carbamazepine  (ISO)
chlorpyrifos  (ISO)
cisplatin  (ISO)
clomiphene  (ISO)
cobalt dichloride  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diethylstilbestrol  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
estrone  (ISO)
fenvalerate  (EXP)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
furan  (EXP)
genistein  (ISO)
hexestrol  (ISO)
hydrogen peroxide  (ISO)
isoflurane  (ISO)
menadione  (ISO)
mercury dibromide  (ISO)
mestranol  (ISO)
methimazole  (EXP)
methotrexate  (ISO)
methylisothiazolinone  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (EXP)
nickel atom  (ISO)
p-chloromercuribenzoic acid  (ISO)
panobinostat  (ISO)
paracetamol  (EXP)
perfluorononanoic acid  (ISO)
phenobarbital  (ISO)
pirinixic acid  (ISO)
raloxifene  (ISO)
SB 431542  (ISO)
sevoflurane  (ISO)
sodium arsenate  (ISO)
sulfadimethoxine  (EXP)
tamoxifen  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
thimerosal  (ISO)
titanium dioxide  (ISO)
toluene  (EXP)
triadimefon  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
urethane  (ISO)
valproic acid  (EXP,ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
anatomical structure morphogenesis  (IBA)
apoptotic process involved in outflow tract morphogenesis  (ISO)
artery morphogenesis  (ISO)
biological_process  (ND)
blood vessel development  (ISO)
blood vessel diameter maintenance  (ISO)
blood vessel remodeling  (ISO)
brain development  (ISO)
camera-type eye development  (ISO)
cardiac muscle cell proliferation  (ISO)
cell differentiation  (IBA)
cell migration  (ISO)
cell population proliferation  (ISO)
cellular response to chemokine  (ISO)
cellular response to epidermal growth factor stimulus  (ISO)
cerebellum development  (ISO)
chemokine-mediated signaling pathway  (ISO)
collagen fibril organization  (ISO)
embryonic heart tube development  (ISO)
endochondral ossification  (ISO)
eye development  (ISO)
germ cell migration  (ISO)
glomerular epithelium development  (ISO)
glycosaminoglycan metabolic process  (ISO)
heart development  (ISO)
heart morphogenesis  (ISO)
in utero embryonic development  (ISO)
kidney development  (ISO)
lacrimal gland development  (ISO)
lymph vessel development  (ISO)
maintenance of lens transparency  (ISO)
mesenchymal cell development  (ISO)
mesenchymal cell differentiation  (ISO)
negative regulation of angiogenesis  (ISO)
negative regulation of apoptotic process involved in outflow tract morphogenesis  (ISO)
negative regulation of lymphangiogenesis  (ISO)
negative regulation of mitotic cell cycle  (ISO)
negative regulation of transcription by RNA polymerase II  (ISO)
neural crest cell development  (ISO)
Notch signaling pathway  (ISO)
odontogenesis of dentin-containing tooth  (ISO)
ossification  (ISO)
ovarian follicle development  (ISO)
paraxial mesoderm formation  (ISO)
positive regulation of DNA-templated transcription  (ISO)
positive regulation of epithelial to mesenchymal transition  (ISO)
positive regulation of gene expression  (ISO)
positive regulation of hematopoietic progenitor cell differentiation  (ISO)
positive regulation of hematopoietic stem cell differentiation  (ISO)
positive regulation of keratinocyte differentiation  (ISO)
positive regulation of transcription by RNA polymerase II  (ISO)
regulation of DNA-templated transcription  (ISO)
regulation of organ growth  (ISO)
regulation of transcription by RNA polymerase II  (IBA)
skeletal system development  (ISO)
somitogenesis  (ISO)
ureteric bud development  (ISO)
vascular endothelial growth factor receptor signaling pathway  (ISO)
vascular endothelial growth factor signaling pathway  (ISO)
ventricular cardiac muscle tissue morphogenesis  (ISO)

Cellular Component
cytosol  (IEA,ISO)
heterochromatin  (ISO)
nucleoplasm  (IEA,ISO)
nucleus  (ISO)

References

References - curated
# Reference Title Reference Citation
1. DNA methylation profiling in doxorubicin treated primary locally advanced breast tumours identifies novel genes associated with survival and treatment response. Dejeux E, etal., Mol Cancer. 2010 Mar 25;9:68. doi: 10.1186/1476-4598-9-68.
2. Novel mutations in the FOXC1 gene in Japanese patients with Axenfeld-Rieger syndrome. Fuse N, etal., Mol Vis. 2007 Jun 27;13:1005-9.
3. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
4. Primary cellular meningeal defects cause neocortical dysplasia and dyslamination. Hecht JH, etal., Ann Neurol. 2010 Oct;68(4):454-64. doi: 10.1002/ana.22103.
5. A family with Axenfeld-Rieger syndrome and Peters Anomaly caused by a point mutation (Phe112Ser) in the FOXC1 gene. Honkanen RA, etal., Am J Ophthalmol. 2003 Mar;135(3):368-75.
6. The forkhead/winged helix gene Mf1 is disrupted in the pleiotropic mouse mutation congenital hydrocephalus. Kume T, etal., Cell. 1998 Jun 12;93(6):985-96.
7. Axenfeld-Rieger anomaly: a novel mutation in the forkhead box C1 (FOXC1) gene in a 4-generation family. Mortemousque B, etal., Arch Ophthalmol. 2004 Oct;122(10):1527-33.
8. Frequent aberrant DNA methylation of ABCB1, FOXC1, PPP2R2B and PTEN in ductal carcinoma in situ and early invasive breast cancer. Muggerud AA, etal., Breast Cancer Res. 2010;12(1):R3. doi: 10.1186/bcr2466. Epub 2010 Jan 7.
9. OMIM Disease Annotation Pipeline OMIM Disease Annotation Pipeline
10. Basal-like breast cancer defined by FOXC1 expression offers superior prognostic value: a retrospective immunohistochemical study. Ray PS, etal., Ann Surg Oncol. 2011 Dec;18(13):3839-47. doi: 10.1245/s10434-011-1657-8. Epub 2011 Mar 18.
11. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
12. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
13. Comprehensive gene review and curation RGD comprehensive gene curation
14. Haploinsufficiency of the transcription factors FOXC1 and FOXC2 results in aberrant ocular development. Smith RS, etal., Hum Mol Genet. 2000 Apr 12;9(7):1021-32.
15. A novel mutation in the FOXC1 gene in a family with Axenfeld-Rieger syndrome and Peters' anomaly. Weisschuh N, etal., Clin Genet. 2008 Nov;74(5):476-80. doi: 10.1111/j.1399-0004.2008.01025.x. Epub 2008 May 21.
Additional References at PubMed
PMID:4269479   PMID:4784576   PMID:4819561   PMID:5500588   PMID:7683413   PMID:7957066   PMID:9792859   PMID:10072431   PMID:10395790   PMID:10474162   PMID:10479458   PMID:10704385  
PMID:11179011   PMID:11237714   PMID:11562355   PMID:11782474   PMID:12408963   PMID:14506133   PMID:14512019   PMID:14578375   PMID:15196959   PMID:15277473   PMID:15299087   PMID:15326124  
PMID:15632090   PMID:15684392   PMID:16412416   PMID:16449236   PMID:16470615   PMID:16492674   PMID:16678147   PMID:16839542   PMID:17210863   PMID:17993506   PMID:18187037   PMID:18579532  
PMID:19279310   PMID:19668217   PMID:19793056   PMID:20406990   PMID:22171010   PMID:22991501   PMID:24590069   PMID:25786029   PMID:25808752   PMID:26565916   PMID:27804176   PMID:27907090  
PMID:28223138   PMID:30428305   PMID:32391604   PMID:34454602  


Genomics

Comparative Map Data
Foxc1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81732,840,119 - 32,844,100 (-)NCBIGRCr8
mRatBN7.21732,631,379 - 32,635,361 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1732,633,142 - 32,634,803 (-)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1732,479,163 - 32,483,145 (-)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01734,082,977 - 34,086,959 (-)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01732,474,984 - 32,478,967 (-)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01733,947,501 - 33,951,484 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1733,947,506 - 33,951,484 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01735,833,707 - 35,837,690 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41739,026,186 - 39,030,163 (-)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1732,190,633 - 32,194,475 (-)NCBICelera
Cytogenetic Map17p12NCBI
FOXC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3861,609,915 - 1,613,897 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl61,609,915 - 1,613,897 (+)EnsemblGRCh38hg38GRCh38
GRCh3761,610,150 - 1,614,132 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3661,555,680 - 1,559,131 (+)NCBINCBI36Build 36hg18NCBI36
Build 3461,555,679 - 1,557,341NCBI
Celera62,838,909 - 2,842,360 (+)NCBICelera
Cytogenetic Map6p25.3NCBI
HuRef61,480,597 - 1,483,685 (+)NCBIHuRef
CHM1_161,612,575 - 1,616,026 (+)NCBICHM1_1
T2T-CHM13v2.061,472,916 - 1,476,901 (+)NCBIT2T-CHM13v2.0
Foxc1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391331,990,629 - 31,994,618 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1331,990,616 - 31,996,459 (+)EnsemblGRCm39 Ensembl
GRCm381331,806,646 - 31,810,635 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1331,806,633 - 31,812,476 (+)EnsemblGRCm38mm10GRCm38
MGSCv371331,898,515 - 31,902,504 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361331,814,111 - 31,818,100 (+)NCBIMGSCv36mm8
Celera1332,016,470 - 32,020,494 (+)NCBICelera
Cytogenetic Map13A3.2NCBI
cM Map1313.52NCBI
FOXC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2516,225,162 - 16,229,276 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1612,220,400 - 12,224,482 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v061,429,051 - 1,433,180 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
FOXC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha352,065,990 - 2,069,716 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0352,012,278 - 2,015,999 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl352,012,321 - 2,014,021 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1351,987,281 - 1,991,006 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0352,008,542 - 2,012,243 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0353,344,191 - 3,347,919 (+)NCBIUU_Cfam_GSD_1.0
FOXC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl7837,171 - 838,805 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.17837,088 - 840,593 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.271,037,165 - 1,039,040 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FOXC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11770,533,048 - 70,536,555 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1770,534,821 - 70,536,476 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660441,552,589 - 1,556,578 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Foxc1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462475623,060,751 - 23,062,343 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_00462475623,060,065 - 23,062,407 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Foxc1
23 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:26
Count of miRNA genes:23
Interacting mature miRNAs:24
Transcripts:ENSRNOT00000023957
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2300002Iddm36Insulin dependent diabetes mellitus QTL 361.98blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)17926675540968173Rat
70210Cm15Cardiac mass QTL 156.5heart right ventricle mass (VT:0007033)heart right ventricle wet weight (CMO:0000072)173006647275066472Rat
8552966Pigfal18Plasma insulin-like growth factor 1 level QTL 188.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)171286094257860942Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
70157Niddm32Non-insulin dependent diabetes mellitus QTL 324.34blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)172266079955604694Rat
9589151Insul30Insulin level QTL 308.820.001blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)171286094257860942Rat
724549Niddm56Non-insulin dependent diabetes mellitus QTL 560.03blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)173219953449497050Rat
1354628Stl13Serum triglyceride level QTL 133.8blood triglyceride amount (VT:0002644)blood triglyceride level (CMO:0000118)172149899450592236Rat
1581512Cm55Cardiac mass QTL 552.80.05heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172723344583975845Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
61394Bp8Blood pressure QTL 82.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)172328632264246472Rat
9589057Scfw6Subcutaneous fat weight QTL 68.620.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)171286094257860942Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)172652205171522051Rat
9590154Scort9Serum corticosterone level QTL 923.570.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)171286094257860942Rat
10450503Bp386Blood pressure QTL 3860.28arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172201970567019705Rat
1559055Bp278Blood pressure QTL 2780.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
9590088Insglur7Insulin/glucose ratio QTL 720.380.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)171286094257860942Rat
2313854Bp343Blood pressure QTL 3433.9life span trait (VT:0005372)age at time of death (CMO:0001193)173219953455604694Rat
2317053Aia25Adjuvant induced arthritis QTL 252.69joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)171060469455604694Rat
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1331765Hrtrt15Heart rate QTL 154.094heart pumping trait (VT:2000009)heart rate (CMO:0000002)171553702560531414Rat
7411666Foco31Food consumption QTL 3111.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)171286094257860942Rat
7394837Memor18Memory QTL 18exploratory behavior trait (VT:0010471)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)172355021368550213Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
12903980Cm120Cardiac mass QTL 1200.002heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)172385892668858926Rat
12903981Am17Aortic mass QTL 170.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)172385892668858926Rat
4889955Bss93Bone structure and strength QTL 934.4tibia size trait (VT:0100001)tibia cortical bone volume to tibia total bone volume ratio (CMO:0001727)172723344565155015Rat
4889891Eae32Experimental allergic encephalomyelitis QTL 324.80.0002nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)172723344572233445Rat
12903982Kidm70Kidney mass QTL 700.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)172385892668858926Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
12903978Cm118Cardiac mass QTL 1180.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)172385892668858926Rat
12903979Cm119Cardiac mass QTL 1190.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)172385892668858926Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
1354663Bvd5Brain ventricular dilatation QTL 53.510.001brain ventricle morphology trait (VT:0000822)hydrocephalus severity score (CMO:0001881)173219953486201342Rat
7488966Bp370Blood pressure QTL 3700.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)172385892668858926Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 81 80 49 25 49 6 208 97 93 45 60 31

Sequence


Ensembl Acc Id: ENSRNOT00000023957   ⟹   ENSRNOP00000067211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl1733,947,506 - 33,951,484 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115235   ⟹   ENSRNOP00000094015
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1732,633,142 - 32,634,803 (-)Ensembl
RefSeq Acc Id: NM_134338   ⟹   NP_599165
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81732,840,119 - 32,844,100 (-)NCBI
mRatBN7.21732,631,379 - 32,635,361 (-)NCBI
Rnor_6.01733,947,501 - 33,951,484 (-)NCBI
Rnor_5.01735,833,707 - 35,837,690 (-)NCBI
Celera1732,190,633 - 32,194,475 (-)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_599165 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL98350 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000094015.1
RefSeq Acc Id: NP_599165   ⟸   NM_134338
- UniProtKB: A0A8I6GKJ4 (UniProtKB/TrEMBL),   A6J7K0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000067211   ⟸   ENSRNOT00000023957
Ensembl Acc Id: ENSRNOP00000094015   ⟸   ENSRNOT00000115235
Protein Domains
Fork-head

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RCA0-F1-model_v2 AlphaFold M0RCA0 1-553 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700423
Promoter ID:EPDNEW_R10945
Type:single initiation site
Name:Foxc1_1
Description:forkhead box C1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10946  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01733,951,249 - 33,951,309EPDNEW
RGD ID:13700424
Promoter ID:EPDNEW_R10946
Type:initiation region
Name:Foxc1_2
Description:forkhead box C1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R10945  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01733,951,462 - 33,951,522EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589718 AgrOrtholog
BioCyc Gene G2FUF-9560 BioCyc
Ensembl Genes ENSRNOG00000017800 Ensembl
  ENSRNOG00000070919 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000115235.1 UniProtKB/TrEMBL
Gene3D-CATH 1.10.10.10 UniProtKB/TrEMBL
InterPro Fork_head_dom UniProtKB/TrEMBL
  FOX_domain-containing UniProtKB/TrEMBL
  FOXC1/C2-like_FH UniProtKB/TrEMBL
  TF_fork_head_CS_1 UniProtKB/TrEMBL
  TF_fork_head_CS_2 UniProtKB/TrEMBL
  WH-like_DNA-bd_sf UniProtKB/TrEMBL
  WH_DNA-bd_sf UniProtKB/TrEMBL
KEGG Report rno:364706 UniProtKB/TrEMBL
NCBI Gene 364706 ENTREZGENE
PANTHER FORKHEAD BOX PROTEIN UniProtKB/TrEMBL
  PTHR11829:SF68 UniProtKB/TrEMBL
Pfam Forkhead UniProtKB/TrEMBL
PhenoGen Foxc1 PhenoGen
PRINTS FORKHEAD UniProtKB/TrEMBL
PROSITE FORK_HEAD_1 UniProtKB/TrEMBL
  FORK_HEAD_2 UniProtKB/TrEMBL
  FORK_HEAD_3 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017800 RatGTEx
  ENSRNOG00000070919 RatGTEx
SMART SM00339 UniProtKB/TrEMBL
Superfamily-SCOP SSF46785 UniProtKB/TrEMBL
UniProt A0A8I6GKJ4 ENTREZGENE, UniProtKB/TrEMBL
  A6J7K0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-09-19 Foxc1  forkhead box C1  LOC364706  similar to forkhead box C1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC364706  similar to forkhead box C1      Symbol and Name status set to provisional 70820 PROVISIONAL