Ranbp3 (RAN binding protein 3) - Rat Genome Database

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Gene: Ranbp3 (RAN binding protein 3) Rattus norvegicus
Analyze
Symbol: Ranbp3
Name: RAN binding protein 3
RGD ID: 1589604
Description: Predicted to enable R-SMAD binding activity and small GTPase binding activity. Predicted to contribute to GTPase activator activity. Predicted to be involved in protein export from nucleus. Predicted to be located in nucleoplasm. Predicted to be part of nuclear pore. Predicted to be active in cytoplasm. Orthologous to human RANBP3 (RAN binding protein 3); PARTICIPATES IN Wnt signaling, canonical pathway; INTERACTS WITH bisphenol A; Brodifacoum; 1,2-dimethylhydrazine (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC501281; ran-binding protein 3; similar to RAN binding protein 3 isoform RANBP3-b
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.291,507,233 - 1,544,460 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,507,361 - 1,544,460 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,941,437 - 1,978,603 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,290,582 - 7,327,688 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,246,634 - 6,283,800 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,344,190 - 10,381,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,344,992 - 10,369,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,341,270 - 9,378,505 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,972,289 - 7,009,429 (-)NCBICelera
Cytogenetic Map9q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
cytoplasm  (IBA)
nuclear pore  (IBA)
nucleoplasm  (ISO)
nucleus  (ISO)

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. PID Annotation Import Pipeline Pipeline to import Pathway Interaction Database annotations from NCI into RGD
3. GOA pipeline RGD automated data pipeline
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:9637251   PMID:12477932   PMID:19289081  


Genomics

Comparative Map Data
Ranbp3
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
mRatBN7.291,507,233 - 1,544,460 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl91,507,361 - 1,544,460 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx91,941,437 - 1,978,603 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.097,290,582 - 7,327,688 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.096,246,634 - 6,283,800 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0910,344,190 - 10,381,415 (-)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl910,344,992 - 10,369,937 (-)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.099,341,270 - 9,378,505 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera96,972,289 - 7,009,429 (-)NCBICelera
Cytogenetic Map9q11NCBI
RANBP3
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38195,916,139 - 5,978,140 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl195,916,139 - 5,978,142 (-)EnsemblGRCh38hg38GRCh38
GRCh37195,916,150 - 5,978,151 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36195,867,150 - 5,929,113 (-)NCBINCBI36Build 36hg18NCBI36
Build 34195,868,016 - 5,929,103NCBI
Celera195,855,112 - 5,917,277 (-)NCBICelera
Cytogenetic Map19p13.3NCBI
HuRef195,675,643 - 5,737,807 (-)NCBIHuRef
CHM1_1195,916,402 - 5,978,588 (-)NCBICHM1_1
T2T-CHM13v2.0195,903,579 - 5,965,589 (-)NCBIT2T-CHM13v2.0
Ranbp3
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391756,980,225 - 57,018,769 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1756,980,294 - 57,018,764 (+)EnsemblGRCm39 Ensembl
GRCm381756,673,225 - 56,711,769 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1756,673,294 - 56,711,764 (+)EnsemblGRCm38mm10GRCm38
MGSCv371756,812,680 - 56,851,192 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361756,358,482 - 56,396,885 (+)NCBIMGSCv36mm8
Celera1761,017,392 - 61,055,904 (+)NCBICelera
Cytogenetic Map17DNCBI
cM Map1729.45NCBI
Ranbp3
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554953,527,770 - 3,548,362 (+)EnsemblChiLan1.0
ChiLan1.0NW_0049554953,495,179 - 3,549,528 (+)NCBIChiLan1.0ChiLan1.0
RANBP3
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1199,543,904 - 9,604,995 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0194,937,068 - 4,999,244 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1195,865,997 - 5,927,884 (-)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl195,865,997 - 5,927,884 (-)Ensemblpanpan1.1panPan2
RANBP3
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12054,121,976 - 54,176,056 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2054,122,898 - 54,175,699 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha2053,865,905 - 53,919,853 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.02054,773,579 - 54,827,540 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2054,774,326 - 54,827,540 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12053,839,999 - 53,893,946 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02054,288,885 - 54,342,822 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02054,518,998 - 54,572,977 (+)NCBIUU_Cfam_GSD_1.0
Ranbp3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118214,380,029 - 214,436,393 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365883,398,653 - 3,414,354 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_0049365883,398,384 - 3,454,058 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RANBP3
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl273,062,896 - 73,123,714 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.1273,062,882 - 73,123,268 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2273,690,396 - 73,723,219 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RANBP3
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.165,561,787 - 5,623,452 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl65,543,631 - 5,623,321 (-)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_0236660812,421,366 - 2,484,255 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ranbp3
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248284,258,665 - 4,310,551 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248284,258,528 - 4,311,647 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Ranbp3
115 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:1041
Count of miRNA genes:207
Interacting mature miRNAs:243
Transcripts:ENSRNOT00000071228, ENSRNOT00000072009, ENSRNOT00000072911
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
10054141Gmadr4Adrenal mass QTL 42.450.0074adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)9114209783Rat
70226Eae4Experimental allergic encephalomyelitis QTL 4nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)9125661317Rat
9589055Scfw5Subcutaneous fat weight QTL 55.550.001subcutaneous adipose mass (VT:1000472)abdominal subcutaneous fat pad weight (CMO:0002069)9137999212Rat
7411592Foco8Food consumption QTL 87.40.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)9137999212Rat
9589158Gluco65Glucose level QTL 656.820.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)9137999212Rat
1300124Cm4Cardiac mass QTL 43.55heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)9140594091Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9143718459Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9143718459Rat
10054125Srcrt7Stress Responsive Cort QTL 73.330.0011blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)9187073594Rat
1331757Cdexp1CD45RC expression in CD8 T cells QTL 14.3CD8-positive T cell quantity (VT:0008077)blood CD45RC(high) CD8 T cell count to CD45RC(low) CD8 T cell count ratio (CMO:0001990)9102453767509080Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9125408446254084Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9125408446254084Rat

Markers in Region
RH136918  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.291,544,210 - 1,544,390 (+)MAPPERmRatBN7.2
mRatBN7.2371,504,832 - 71,505,012 (+)MAPPERmRatBN7.2
mRatBN7.2371,504,832 - 71,505,012 (-)MAPPERmRatBN7.2
mRatBN7.291,544,210 - 1,544,390 (-)MAPPERmRatBN7.2
Rnor_6.0910,344,260 - 10,344,439NCBIRnor6.0
Rnor_6.0373,790,083 - 73,790,262NCBIRnor6.0
Rnor_5.099,341,340 - 9,341,519UniSTSRnor5.0
Rnor_5.0380,443,037 - 80,443,216UniSTSRnor5.0
RGSC_v3.4369,659,719 - 69,659,898UniSTSRGSC3.4
Celera370,788,957 - 70,789,136UniSTS
Celera96,972,359 - 6,972,538UniSTS
Cytogenetic Map3q24UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 43 57 41 19 41 8 11 74 35 41 11 8
Low
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001399356 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_001056647 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226678 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226679 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226680 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226681 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226683 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244357 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244358 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244360 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006244362 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084330 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005488996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC105832 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474092 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212208 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JACYVU010000204 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000071228   ⟹   ENSRNOP00000067560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,507,361 - 1,544,460 (+)Ensembl
Rnor_6.0 Ensembl910,344,992 - 10,369,937 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000072009   ⟹   ENSRNOP00000065980
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,507,374 - 1,544,452 (+)Ensembl
Rnor_6.0 Ensembl910,344,992 - 10,369,937 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000072911   ⟹   ENSRNOP00000064728
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,507,374 - 1,544,460 (+)Ensembl
Rnor_6.0 Ensembl910,344,992 - 10,369,937 (-)Ensembl
RefSeq Acc Id: ENSRNOT00000103002   ⟹   ENSRNOP00000082931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,518,001 - 1,544,460 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000110265   ⟹   ENSRNOP00000097654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,525,368 - 1,544,460 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000113797   ⟹   ENSRNOP00000093419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,528,545 - 1,544,460 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000117671   ⟹   ENSRNOP00000081158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl91,518,237 - 1,544,441 (+)Ensembl
RefSeq Acc Id: NM_001399356   ⟹   NP_001386285
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,507,346 - 1,544,460 (+)NCBI
RefSeq Acc Id: XM_006244357   ⟹   XP_006244419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,507,255 - 1,544,460 (+)NCBI
Rnor_6.0910,344,190 - 10,381,415 (-)NCBI
Rnor_5.099,341,270 - 9,378,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244358   ⟹   XP_006244420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,507,255 - 1,544,460 (+)NCBI
Rnor_6.0910,344,190 - 10,381,414 (-)NCBI
Rnor_5.099,341,270 - 9,378,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244359   ⟹   XP_006244421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,507,255 - 1,544,460 (+)NCBI
Rnor_6.0910,344,190 - 10,381,415 (-)NCBI
Rnor_5.099,341,270 - 9,378,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244360   ⟹   XP_006244422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,507,255 - 1,544,460 (+)NCBI
Rnor_6.0910,344,190 - 10,381,412 (-)NCBI
Rnor_5.099,341,270 - 9,378,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006244362   ⟹   XP_006244424
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,507,255 - 1,544,460 (+)NCBI
Rnor_6.0910,344,190 - 10,381,412 (-)NCBI
Rnor_5.099,341,270 - 9,378,505 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039084330   ⟹   XP_038940258
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,531,001 - 1,544,460 (+)NCBI
RefSeq Acc Id: XM_039084331   ⟹   XP_038940259
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,507,240 - 1,543,087 (+)NCBI
RefSeq Acc Id: XM_039084332   ⟹   XP_038940260
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,507,326 - 1,544,460 (+)NCBI
RefSeq Acc Id: XM_039084333   ⟹   XP_038940261
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,507,325 - 1,544,460 (+)NCBI
RefSeq Acc Id: XR_005488996
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.291,507,233 - 1,543,742 (+)NCBI
RefSeq Acc Id: XP_006244419   ⟸   XM_006244357
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZVI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244420   ⟸   XM_006244358
- Peptide Label: isoform X2
- UniProtKB: M0RD63 (UniProtKB/TrEMBL),   A6KQV8 (UniProtKB/TrEMBL),   A0A8I5ZVI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244422   ⟸   XM_006244360
- Peptide Label: isoform X4
- UniProtKB: M0R5Q3 (UniProtKB/TrEMBL),   A0A8I5ZS95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244421   ⟸   XM_006244359
- Peptide Label: isoform X3
- UniProtKB: M0R920 (UniProtKB/TrEMBL),   A0A8I5ZVI9 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006244424   ⟸   XM_006244362
- Peptide Label: isoform X8
- UniProtKB: A6KQV7 (UniProtKB/TrEMBL),   A0A8I5ZS95 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000064728   ⟸   ENSRNOT00000072911
RefSeq Acc Id: ENSRNOP00000067560   ⟸   ENSRNOT00000071228
RefSeq Acc Id: ENSRNOP00000065980   ⟸   ENSRNOT00000072009
RefSeq Acc Id: XP_038940259   ⟸   XM_039084331
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038940261   ⟸   XM_039084333
- Peptide Label: isoform X9
- UniProtKB: A6KQW1 (UniProtKB/TrEMBL),   A6KQV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940260   ⟸   XM_039084332
- Peptide Label: isoform X9
- UniProtKB: A6KQW1 (UniProtKB/TrEMBL),   A6KQV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038940258   ⟸   XM_039084330
- Peptide Label: isoform X6
- UniProtKB: A6KQV9 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000082931   ⟸   ENSRNOT00000103002
RefSeq Acc Id: ENSRNOP00000093419   ⟸   ENSRNOT00000113797
RefSeq Acc Id: ENSRNOP00000081158   ⟸   ENSRNOT00000117671
RefSeq Acc Id: ENSRNOP00000097654   ⟸   ENSRNOT00000110265
RefSeq Acc Id: NP_001386285   ⟸   NM_001399356
- UniProtKB: A0A8I5ZS95 (UniProtKB/TrEMBL)
Protein Domains
RanBD1

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0RD63-F1-model_v2 AlphaFold M0RD63 1-557 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589604 AgrOrtholog
BioCyc Gene G2FUF-28519 BioCyc
Ensembl Genes ENSRNOG00000049785 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000071228 ENTREZGENE
  ENSRNOT00000071228.4 UniProtKB/TrEMBL
  ENSRNOT00000072009 ENTREZGENE
  ENSRNOT00000072009.3 UniProtKB/TrEMBL
  ENSRNOT00000072911 ENTREZGENE
  ENSRNOT00000072911.4 UniProtKB/TrEMBL
  ENSRNOT00000103002.1 UniProtKB/TrEMBL
  ENSRNOT00000110265.1 UniProtKB/TrEMBL
  ENSRNOT00000113797.1 UniProtKB/TrEMBL
  ENSRNOT00000117671 ENTREZGENE
  ENSRNOT00000117671.1 UniProtKB/TrEMBL
Gene3D-CATH 2.30.29.30 UniProtKB/TrEMBL
InterPro PH_like_dom UniProtKB/TrEMBL
  Ran_bind_dom UniProtKB/TrEMBL
  RanBP1-like UniProtKB/TrEMBL
NCBI Gene 501281 ENTREZGENE
PANTHER PTHR23138 UniProtKB/TrEMBL
  RAN-BINDING PROTEIN 3 UniProtKB/TrEMBL
Pfam Ran_BP1 UniProtKB/TrEMBL
PhenoGen Ranbp3 PhenoGen
PROSITE RANBD1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000049785 RatGTEx
SMART RanBD UniProtKB/TrEMBL
Superfamily-SCOP PH domain-like UniProtKB/TrEMBL
UniProt A0A8I5ZS95 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZVI9 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AKC9_RAT UniProtKB/TrEMBL
  A0A8I6ANL6_RAT UniProtKB/TrEMBL
  A6KQV7 ENTREZGENE, UniProtKB/TrEMBL
  A6KQV8 ENTREZGENE, UniProtKB/TrEMBL
  A6KQV9 ENTREZGENE, UniProtKB/TrEMBL
  A6KQW1 ENTREZGENE, UniProtKB/TrEMBL
  M0R5Q3 ENTREZGENE, UniProtKB/TrEMBL
  M0R920 ENTREZGENE, UniProtKB/TrEMBL
  M0RD63 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-05 Ranbp3  RAN binding protein 3  LOC501281  similar to RAN binding protein 3 isoform RANBP3-b  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-11-19 LOC501281  similar to RAN binding protein 3 isoform RANBP3-b      Symbol and Name status set to provisional 70820 PROVISIONAL