Rnf14 (ring finger protein 14) - Rat Genome Database

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Gene: Rnf14 (ring finger protein 14) Rattus norvegicus
Analyze
Symbol: Rnf14
Name: ring finger protein 14
RGD ID: 1589576
Description: Predicted to enable nuclear androgen receptor binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin protein ligase activity. Predicted to be involved in several processes, including protein K6-linked ubiquitination; protein-RNA covalent cross-linking repair; and regulation of signal transduction. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytosolic ribosome. Orthologous to human RNF14 (ring finger protein 14); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 3-chloropropane-1,2-diol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: androgen receptor associated protein 54; ARA54; E3 ubiquitin-protein ligase RNF14; triad2 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,381,072 - 30,406,859 (+)NCBIGRCr8
mRatBN7.21830,131,627 - 30,155,686 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1830,131,691 - 30,155,685 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1830,236,943 - 30,259,957 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01830,999,652 - 31,022,534 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01830,334,956 - 30,357,834 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01831,443,424 - 31,468,641 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,444,472 - 31,468,640 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01831,123,460 - 31,147,233 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1829,773,473 - 29,796,418 (+)NCBICelera
Cytogenetic Map18p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:11322894   PMID:12477932   PMID:19345326   PMID:25931508  


Genomics

Comparative Map Data
Rnf14
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81830,381,072 - 30,406,859 (+)NCBIGRCr8
mRatBN7.21830,131,627 - 30,155,686 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1830,131,691 - 30,155,685 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx1830,236,943 - 30,259,957 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01830,999,652 - 31,022,534 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01830,334,956 - 30,357,834 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.01831,443,424 - 31,468,641 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1831,444,472 - 31,468,640 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01831,123,460 - 31,147,233 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
Celera1829,773,473 - 29,796,418 (+)NCBICelera
Cytogenetic Map18p11NCBI
RNF14
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385141,949,337 - 141,990,292 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5141,958,328 - 141,990,292 (+)EnsemblGRCh38hg38GRCh38
GRCh375141,346,408 - 141,369,857 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 365141,326,621 - 141,348,938 (+)NCBINCBI36Build 36hg18NCBI36
Celera5137,423,564 - 137,445,843 (+)NCBICelera
Cytogenetic Map5q31.3NCBI
HuRef5136,489,841 - 136,513,255 (+)NCBIHuRef
CHM1_15140,779,739 - 140,803,246 (+)NCBICHM1_1
T2T-CHM13v2.05142,475,299 - 142,516,212 (+)NCBIT2T-CHM13v2.0
Rnf14
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391838,410,513 - 38,450,905 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1838,417,590 - 38,450,902 (+)EnsemblGRCm39 Ensembl
GRCm381838,277,460 - 38,317,852 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1838,284,537 - 38,317,849 (+)EnsemblGRCm38mm10GRCm38
MGSCv371838,456,289 - 38,477,503 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361838,422,663 - 38,443,777 (+)NCBIMGSCv36mm8
Celera1839,640,510 - 39,661,725 (+)NCBICelera
Cytogenetic Map18B3NCBI
cM Map1820.2NCBI
Rnf14
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541511,795,031 - 11,823,577 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495541511,797,287 - 11,826,936 (-)NCBIChiLan1.0ChiLan1.0
RNF14
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24137,194,853 - 137,238,926 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15135,335,038 - 135,378,474 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05137,316,493 - 137,351,061 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15143,417,301 - 143,470,471 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5143,441,497 - 143,461,355 (+)Ensemblpanpan1.1panPan2
RNF14
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1236,908,617 - 36,934,896 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl236,911,612 - 36,929,172 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha233,961,243 - 33,987,525 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0237,363,697 - 37,389,768 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl237,366,685 - 37,385,787 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1234,438,378 - 34,464,657 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0235,249,456 - 35,275,521 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0236,056,785 - 36,083,067 (+)NCBIUU_Cfam_GSD_1.0
Rnf14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213150,626,422 - 150,643,515 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493650412,200,388 - 12,217,518 (-)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493650412,200,395 - 12,217,454 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RNF14
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl2143,551,274 - 143,595,592 (+)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.12143,574,901 - 143,595,601 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.22149,776,388 - 149,797,105 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RNF14
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12344,602,152 - 44,623,711 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2344,602,783 - 44,623,912 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366603433,227,796 - 33,248,143 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rnf14
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247741,187,394 - 1,207,615 (+)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247741,182,599 - 1,208,746 (+)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Rnf14
61 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:130
Count of miRNA genes:106
Interacting mature miRNAs:115
Transcripts:ENSRNOT00000075159
Prediction methods:Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331733Bp233Blood pressure QTL 2333.97196arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182479697779788953Rat
1358358Sradr6Stress Responsive Adrenal Weight QTL 62.49adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)181194429959330563Rat
1331735Rf44Renal function QTL 442.981urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)181823456431359530Rat
61382Bp46Blood pressure QTL 4618.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194179131393320Rat
2301413Bp318Blood pressure QTL 3180.002arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182654808246969551Rat
1331741Bp232Blood pressure QTL 2323.59112arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)182137289383213037Rat
61388Bp2Blood pressure QTL 23.23arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)18135374722Rat
6903359Bp355Blood pressure QTL 3553.6arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194454459796478Rat
12904668Bw188Body weight QTL 1880.03body mass (VT:0001259)body weight (CMO:0000012)182654808246969551Rat
2313082Bss85Bone structure and strength QTL 850.80.0001long bone metaphysis morphology trait (VT:0000133)tibia midshaft total cross-sectional area (CMO:0001715)181495133759951337Rat
12904669Cm125Cardiac mass QTL 1250.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)182654808246969551Rat
1641923Colcr8Colorectal carcinoma resistance QTL 83.10.0014intestine integrity trait (VT:0010554)poorly differentiated malignant colorectal tumor number (CMO:0002076)182206624252293055Rat
12904670Cm126Cardiac mass QTL 1260.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)182654808246969551Rat
2312568Glom21Glomerulus QTL 2120.005kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)18518585840503530Rat
2300157Bmd66Bone mineral density QTL 6613.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
738005Anxrr11Anxiety related response QTL 113.4exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)183003981375039813Rat
12904677Kidm72Kidney mass QTL 720.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)182654808246969551Rat
1331766Bp236Blood pressure QTL 2363.022arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181194429931359530Rat
1358193Emca2Estrogen-induced mammary cancer QTL 21.6mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)181800759963571040Rat
12904673Cm127Cardiac mass QTL 1270.005heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)182654808246969551Rat
12904675Am19Aortic mass QTL 190.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)182654808246969551Rat
631264Scl22Serum cholesterol level QTL 226.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)181194179131393320Rat
2293704Bss35Bone structure and strength QTL 354.590.0002femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)182896485373964853Rat
9589816Gluco68Glucose level QTL 687.250.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)182979296574792965Rat
1331775Bp235Blood pressure QTL 2353.201arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)181823456431359530Rat
2325839Bp348Blood pressure QTL 3480.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182557098570570985Rat
1600373Mamtr6Mammary tumor resistance QTL 6mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)181927890183218561Rat
2293708Bss46Bone structure and strength QTL 468.80.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)181179151863636873Rat
8694378Bw157Body weight QTL 1573.590.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)182979296574792965Rat
2300177Bmd65Bone mineral density QTL 6519.70.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)182896485373964853Rat
9589153Insul31Insulin level QTL 317.150.05blood insulin amount (VT:0001560)plasma insulin level (CMO:0000342)18142547119Rat
1578667Bss21Bone structure and strength QTL 213.5femur morphology trait (VT:0000559)femoral neck cortical cross-sectional area (CMO:0001702)181179151883218561Rat
2312598Bp340Blood pressure QTL 3400.05arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)18130558703Rat
2300180Bmd67Bone mineral density QTL 674.80.0001femur mineral mass (VT:0010011)bone mineral density (CMO:0001226)18134291613Rat
2299160Iddm35Insulin dependent diabetes mellitus QTL 352.79blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)18420794160377792Rat
9590318Scort22Serum corticosterone level QTL 227.640.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)182979296574792965Rat
1578661Bss20Bone structure and strength QTL 203.7femur morphology trait (VT:0000559)femoral neck cross-sectional area (CMO:0001697)181179151883218561Rat
1331753Bp231Blood pressure QTL 2313.643arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)181194429952293055Rat
1331754Bp230Blood pressure QTL 2304.61609arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)182979296574792965Rat
2293661Bss50Bone structure and strength QTL 504.640.0003lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)18134291613Rat
61375Bp41Blood pressure QTL 412.4blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)181194429941122201Rat

Markers in Region
RH127602  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21830,155,235 - 30,155,439 (+)MAPPERmRatBN7.2
Rnor_6.01831,468,191 - 31,468,394NCBIRnor6.0
Rnor_5.01831,146,783 - 31,146,986UniSTSRnor5.0
Celera1829,795,968 - 29,796,171UniSTS
RH 3.4 Map18437.9UniSTS
Cytogenetic Map18p11UniSTS
RH129865  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2341,526,193 - 41,526,401 (-)MAPPERmRatBN7.2
mRatBN7.21830,155,317 - 30,155,534 (+)MAPPERmRatBN7.2
Rnor_6.01831,468,273 - 31,468,489NCBIRnor6.0
Rnor_6.0341,526,254 - 41,526,461NCBIRnor6.0
Rnor_5.0346,603,180 - 46,603,387UniSTSRnor5.0
Rnor_5.01831,146,865 - 31,147,081UniSTSRnor5.0
RGSC_v3.4338,693,669 - 38,693,876UniSTSRGSC3.4
Celera339,624,389 - 39,624,596UniSTS
Celera1829,796,050 - 29,796,266UniSTS
Cytogenetic Map18p11UniSTS
BF416696  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21830,151,876 - 30,151,990 (+)MAPPERmRatBN7.2
Rnor_6.01831,464,832 - 31,464,945NCBIRnor6.0
Rnor_5.01831,143,424 - 31,143,537UniSTSRnor5.0
Celera1829,792,609 - 29,792,722UniSTS
RH 3.4 Map18437.9UniSTS
Cytogenetic Map18p11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001034995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254637 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017601030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097076 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039097079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277537 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277538 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277539 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277540 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277541 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063277542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide BC103648 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473974 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ213465 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000018 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000075159   ⟹   ENSRNOP00000064970
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1830,132,669 - 30,155,685 (+)Ensembl
Rnor_6.0 Ensembl1831,444,472 - 31,468,640 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098653   ⟹   ENSRNOP00000082094
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1830,131,691 - 30,154,978 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000108268   ⟹   ENSRNOP00000089059
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1830,131,693 - 30,155,598 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000115252   ⟹   ENSRNOP00000084800
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1830,131,713 - 30,155,429 (+)Ensembl
RefSeq Acc Id: NM_001034995   ⟹   NP_001030167
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,383,845 - 30,406,859 (+)NCBI
mRatBN7.21830,132,669 - 30,155,686 (+)NCBI
Rnor_6.01831,444,472 - 31,468,641 (+)NCBI
Rnor_5.01831,123,460 - 31,147,233 (+)NCBI
Celera1829,773,473 - 29,796,418 (+)RGD
Sequence:
RefSeq Acc Id: XM_006254637   ⟹   XP_006254699
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,382,913 - 30,406,776 (+)NCBI
mRatBN7.21830,131,792 - 30,155,287 (+)NCBI
Rnor_6.01831,443,595 - 31,468,627 (+)NCBI
Rnor_5.01831,123,460 - 31,147,233 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006254639   ⟹   XP_006254701
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,387,831 - 30,406,776 (+)NCBI
mRatBN7.21830,131,627 - 30,155,595 (+)NCBI
Rnor_6.01831,443,424 - 31,468,550 (+)NCBI
Rnor_5.01831,123,460 - 31,147,233 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017601030   ⟹   XP_017456519
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,382,850 - 30,406,776 (+)NCBI
mRatBN7.21830,131,792 - 30,155,287 (+)NCBI
Rnor_6.01831,443,595 - 31,468,627 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039097076   ⟹   XP_038953004
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,383,455 - 30,406,776 (+)NCBI
mRatBN7.21830,132,539 - 30,155,287 (+)NCBI
RefSeq Acc Id: XM_039097079   ⟹   XP_038953007
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,385,985 - 30,399,944 (+)NCBI
mRatBN7.21830,131,627 - 30,148,735 (+)NCBI
RefSeq Acc Id: XM_063277537   ⟹   XP_063133607
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,384,475 - 30,406,776 (+)NCBI
RefSeq Acc Id: XM_063277538   ⟹   XP_063133608
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,384,475 - 30,406,776 (+)NCBI
RefSeq Acc Id: XM_063277539   ⟹   XP_063133609
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,384,479 - 30,406,776 (+)NCBI
RefSeq Acc Id: XM_063277540   ⟹   XP_063133610
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,381,072 - 30,406,776 (+)NCBI
RefSeq Acc Id: XM_063277541   ⟹   XP_063133611
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,383,305 - 30,406,776 (+)NCBI
RefSeq Acc Id: XM_063277542   ⟹   XP_063133612
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81830,386,702 - 30,406,776 (+)NCBI
RefSeq Acc Id: NP_001030167   ⟸   NM_001034995
- UniProtKB: Q3ZAU6 (UniProtKB/TrEMBL),   A6J3F9 (UniProtKB/TrEMBL),   A0A8I5ZTV5 (UniProtKB/TrEMBL),   A6J3G1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254701   ⟸   XM_006254639
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A7D2 (UniProtKB/TrEMBL),   A6J3G3 (UniProtKB/TrEMBL),   B2GV23 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006254699   ⟸   XM_006254637
- Peptide Label: isoform X1
- UniProtKB: Q3ZAU6 (UniProtKB/TrEMBL),   A6J3F9 (UniProtKB/TrEMBL),   A0A8I5ZTV5 (UniProtKB/TrEMBL),   A6J3G1 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456519   ⟸   XM_017601030
- Peptide Label: isoform X1
- UniProtKB: Q3ZAU6 (UniProtKB/TrEMBL),   A6J3F9 (UniProtKB/TrEMBL),   A0A8I5ZTV5 (UniProtKB/TrEMBL),   A6J3G1 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000064970   ⟸   ENSRNOT00000075159
RefSeq Acc Id: XP_038953007   ⟸   XM_039097079
- Peptide Label: isoform X3
RefSeq Acc Id: XP_038953004   ⟸   XM_039097076
- Peptide Label: isoform X1
- UniProtKB: Q3ZAU6 (UniProtKB/TrEMBL),   A6J3F9 (UniProtKB/TrEMBL),   A0A8I5ZTV5 (UniProtKB/TrEMBL),   A6J3G1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000084800   ⟸   ENSRNOT00000115252
Ensembl Acc Id: ENSRNOP00000082094   ⟸   ENSRNOT00000098653
Ensembl Acc Id: ENSRNOP00000089059   ⟸   ENSRNOT00000108268
RefSeq Acc Id: XP_063133610   ⟸   XM_063277540
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTV5 (UniProtKB/TrEMBL),   A6J3F9 (UniProtKB/TrEMBL),   A6J3G1 (UniProtKB/TrEMBL),   Q3ZAU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133611   ⟸   XM_063277541
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTV5 (UniProtKB/TrEMBL),   A6J3F9 (UniProtKB/TrEMBL),   A6J3G1 (UniProtKB/TrEMBL),   Q3ZAU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133607   ⟸   XM_063277537
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTV5 (UniProtKB/TrEMBL),   A6J3F9 (UniProtKB/TrEMBL),   A6J3G1 (UniProtKB/TrEMBL),   Q3ZAU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133608   ⟸   XM_063277538
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTV5 (UniProtKB/TrEMBL),   A6J3F9 (UniProtKB/TrEMBL),   A6J3G1 (UniProtKB/TrEMBL),   Q3ZAU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133609   ⟸   XM_063277539
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZTV5 (UniProtKB/TrEMBL),   A6J3F9 (UniProtKB/TrEMBL),   A6J3G1 (UniProtKB/TrEMBL),   Q3ZAU6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063133612   ⟸   XM_063277542
- Peptide Label: isoform X2
- UniProtKB: B2GV23 (UniProtKB/TrEMBL),   A0A8I6A7D2 (UniProtKB/TrEMBL),   A6J3G3 (UniProtKB/TrEMBL)
Protein Domains
RING-type   RWD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q3ZAU6-F1-model_v2 AlphaFold Q3ZAU6 1-479 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1589576 AgrOrtholog
BioCyc Gene G2FUF-7777 BioCyc
Ensembl Genes ENSRNOG00000045637 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000075159.2 UniProtKB/TrEMBL
  ENSRNOT00000098653.1 UniProtKB/TrEMBL
  ENSRNOT00000108268.1 UniProtKB/TrEMBL
  ENSRNOT00000115252.1 UniProtKB/TrEMBL
Gene3D-CATH 1.20.120.1750 UniProtKB/TrEMBL
  2.20.25.20 UniProtKB/TrEMBL
  3.10.110.10 UniProtKB/TrEMBL
  3.30.40.10 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7112263 IMAGE-MGC_LOAD
  IMAGE:7315158 IMAGE-MGC_LOAD
InterPro E3_UB_ligase_RBR UniProtKB/TrEMBL
  Rcat_RBR_RNF14 UniProtKB/TrEMBL
  RNF14 UniProtKB/TrEMBL
  RWD-domain UniProtKB/TrEMBL
  TRIAD_supradom UniProtKB/TrEMBL
  UBQ-conjugating_enzyme/RWD UniProtKB/TrEMBL
  Znf_C6HC UniProtKB/TrEMBL
  Znf_RING UniProtKB/TrEMBL
  Znf_RING/FYVE/PHD UniProtKB/TrEMBL
  Znf_RING_CS UniProtKB/TrEMBL
KEGG Report rno:619577 UniProtKB/TrEMBL
MGC_CLONE MGC:125150 IMAGE-MGC_LOAD
  MGC:188032 IMAGE-MGC_LOAD
NCBI Gene 619577 ENTREZGENE
PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF14 UniProtKB/TrEMBL
  PTHR11685 UniProtKB/TrEMBL
Pfam IBR UniProtKB/TrEMBL
  RWD UniProtKB/TrEMBL
PhenoGen Rnf14 PhenoGen
PROSITE RWD UniProtKB/TrEMBL
  TRIAD UniProtKB/TrEMBL
  ZF_RING_1 UniProtKB/TrEMBL
  ZF_RING_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000045637 RatGTEx
SMART IBR UniProtKB/TrEMBL
  RWD UniProtKB/TrEMBL
Superfamily-SCOP RING/U-box UniProtKB/TrEMBL
  UBQ-conjugat/RWD-like UniProtKB/TrEMBL
UniProt A0A8I5ZTV5 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A1Y2_RAT UniProtKB/TrEMBL
  A0A8I6A7D2 ENTREZGENE, UniProtKB/TrEMBL
  A6J3F9 ENTREZGENE, UniProtKB/TrEMBL
  A6J3G1 ENTREZGENE, UniProtKB/TrEMBL
  A6J3G3 ENTREZGENE, UniProtKB/TrEMBL
  B2GV23 ENTREZGENE, UniProtKB/TrEMBL
  Q3ZAU6 ENTREZGENE
UniProt Secondary Q3ZAU6 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2006-11-19 Rnf14  ring finger protein 14      Symbol and Name status set to provisional 70820 PROVISIONAL