Rnf14 (ring finger protein 14) - Rat Genome Database

Name: Rnf14
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

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Gene: Rnf14 (ring finger protein 14) Rattus norvegicus

Analyze

Symbol:

Rnf14

Name:

ring finger protein 14

RGD ID:

1589576

Description:

Predicted to enable nuclear androgen receptor binding activity; ubiquitin conjugating enzyme binding activity; and ubiquitin protein ligase activity. Predicted to be involved in several processes, including positive regulation of nitrogen compound metabolic process; regulation of signal transduction; and rescue of stalled ribosome. Predicted to be located in cytosol and nucleoplasm. Predicted to be part of ubiquitin ligase complex. Predicted to be active in cytosolic ribosome. Orthologous to human RNF14 (ring finger protein 14); INTERACTS WITH (+)-schisandrin B; 2,4-dinitrotoluene; 3-chloropropane-1,2-diol.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

androgen receptor associated protein 54; ARA54; E3 ubiquitin-protein ligase RNF14; triad2 protein

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	RNF14 (ring finger protein 14)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Rnf14 (ring finger protein 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Rnf14 (ring finger protein 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	RNF14 (ring finger protein 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	RNF14 (ring finger protein 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Rnf14 (ring finger protein 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	RNF14 (ring finger protein 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	RNF14 (ring finger protein 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Rnf14 (ring finger protein 14)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TRAV12-3 (T cell receptor alpha variable 12-3)	HGNC	OMA
Homo sapiens (human):	TRAV12-1 (T cell receptor alpha variable 12-1)	HGNC	OMA
Homo sapiens (human):	TRAV12-2 (T cell receptor alpha variable 12-2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	RNF14 (ring finger protein 14)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Rnf14 (ring finger protein 14)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	rnf14 (ring finger protein 14)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	ITT1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F56D2.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|SonicParanoid)
Caenorhabditis elegans (roundworm):	F56D2.5	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoInspector\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	rnf14.2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	30,131,627 - 30,155,686 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	30,131,691 - 30,155,685 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	30,236,943 - 30,259,957 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	30,999,652 - 31,022,534 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	30,334,956 - 30,357,834 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	31,443,424 - 31,468,641 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	31,444,472 - 31,468,640 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	31,123,460 - 31,147,233 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	18	29,773,473 - 29,796,418 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Coats disease (ISO)

Diencephalic-Mesencephalic Junction Dysplasia Syndrome 1 (ISO)

Diencephalic-Mesencephalic Junction Dysplasia Syndromes (ISO)

familial adenomatous polyposis 1 (ISO)

genetic disease (ISO)

Hereditary Neoplastic Syndromes (ISO)

Marshall syndrome (ISO)

Neurodevelopmental Disorders (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

(+)-schisandrin B (EXP)

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,3,7,8-Tetrachlorodibenzofuran (ISO)

2,4-dinitrotoluene (EXP)

2-methylcholine (ISO)

3-chloropropane-1,2-diol (EXP)

4,4'-sulfonyldiphenol (ISO)

5-aza-2'-deoxycytidine (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bortezomib (ISO)

CGP 52608 (ISO)

chlorpyrifos (ISO)

chromium(6+) (EXP)

cisplatin (ISO)

cobalt dichloride (ISO)

cocaine (EXP)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

cylindrospermopsin (ISO)

diethyl maleate (ISO)

dioxygen (ISO)

enzyme inhibitor (ISO)

ethanol (ISO)

ethyl methanesulfonate (ISO)

fenofibrate (ISO)

folic acid (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

methylmercury chloride (ISO)

nefazodone (EXP)

paracetamol (EXP,ISO)

phenobarbital (ISO)

quercetin (ISO)

quercitrin (ISO)

sulfadimethoxine (EXP)

testosterone (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triphenyl phosphate (EXP)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of DNA-templated transcription (ISO)

positive regulation of proteasomal ubiquitin-dependent protein catabolic process (IBA)

protein K6-linked ubiquitination (ISO)

protein polyubiquitination (IBA)

protein ubiquitination (ISO)

regulation of androgen receptor signaling pathway (ISO)

regulation of canonical Wnt signaling pathway (ISO)

regulation of DNA-templated transcription (ISO)

rescue of stalled ribosome (ISO)

ubiquitin-dependent protein catabolic process (IBA,ISO)

Cellular Component

cytoplasm (IBA,ISO)

cytosol (ISO)

cytosolic ribosome (ISO)

nucleoplasm (ISO)

nucleus (ISO)

ubiquitin ligase complex (IBA)

Molecular Function

nuclear androgen receptor binding (ISO)

protein binding (ISO)

ubiquitin conjugating enzyme binding (IBA)

ubiquitin protein ligase activity (IBA,ISO)

ubiquitin-like protein transferase activity (ISO)

zinc ion binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11322894	PMID:12477932	PMID:19345326	PMID:25931508

Genomics

Comparative Map Data

Rnf14
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
mRatBN7.2	18	30,131,627 - 30,155,686 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	18	30,131,691 - 30,155,685 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	18	30,236,943 - 30,259,957 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	18	30,999,652 - 31,022,534 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	18	30,334,956 - 30,357,834 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	18	31,443,424 - 31,468,641 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	18	31,444,472 - 31,468,640 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	18	31,123,460 - 31,147,233 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
Celera	18	29,773,473 - 29,796,418 (+)	NCBI		Celera
Cytogenetic Map	18	p11	NCBI

RNF14
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	5	141,949,337 - 141,990,292 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	5	141,958,328 - 141,990,292 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	5	141,346,408 - 141,369,857 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	5	141,326,621 - 141,348,938 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	5	137,423,564 - 137,445,843 (+)	NCBI		Celera
Cytogenetic Map	5	q31.3	NCBI
HuRef	5	136,489,841 - 136,513,255 (+)	NCBI		HuRef
CHM1_1	5	140,779,739 - 140,803,246 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	5	142,475,299 - 142,516,212 (+)	NCBI		T2T-CHM13v2.0

Rnf14
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	18	38,410,513 - 38,450,905 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	18	38,417,590 - 38,450,902 (+)	Ensembl		GRCm39 Ensembl
GRCm38	18	38,277,460 - 38,317,852 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	18	38,284,537 - 38,317,849 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	18	38,456,289 - 38,477,503 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	18	38,422,663 - 38,443,777 (+)	NCBI		MGSCv36	mm8
Celera	18	39,640,510 - 39,661,725 (+)	NCBI		Celera
Cytogenetic Map	18	B3	NCBI
cM Map	18	20.2	NCBI

Rnf14
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955415	11,795,031 - 11,823,577 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955415	11,797,287 - 11,826,936 (-)	NCBI	ChiLan1.0	ChiLan1.0

RNF14
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1	5	135,335,038 - 135,378,474 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	5	137,316,493 - 137,351,061 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	5	143,417,301 - 143,470,471 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	5	143,441,497 - 143,461,355 (+)	Ensembl	panpan1.1		panPan2

RNF14
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	36,908,617 - 36,934,896 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	36,911,612 - 36,929,172 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	33,961,243 - 33,987,525 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	37,363,697 - 37,389,768 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	37,366,685 - 37,385,787 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	34,438,378 - 34,464,657 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	35,249,456 - 35,275,521 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	36,056,785 - 36,083,067 (+)	NCBI		UU_Cfam_GSD_1.0

Rnf14
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024407213	150,626,422 - 150,643,515 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936504	12,200,388 - 12,217,518 (-)	Ensembl	SpeTri2.0
SpeTri2.0	NW_004936504	12,200,395 - 12,217,454 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RNF14
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	143,551,274 - 143,595,592 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	2	143,574,901 - 143,595,601 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	149,776,388 - 149,797,105 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RNF14
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	23	44,602,152 - 44,623,711 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	23	44,602,783 - 44,623,912 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666034	33,227,796 - 33,248,143 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rnf14
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624774	1,187,394 - 1,207,615 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624774	1,182,599 - 1,208,746 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rnf14
55 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	130
Count of miRNA genes:	106
Interacting mature miRNAs:	115
Transcripts:	ENSRNOT00000075159
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2312598	Bp340	Blood pressure QTL 340		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	1	30558703	Rat
2300180	Bmd67	Bone mineral density QTL 67	4.8	0.0001	femur mineral mass (VT:0010011)	bone mineral density (CMO:0001226)	18	1	34291613	Rat
2293661	Bss50	Bone structure and strength QTL 50	4.64	0.0003	lumbar vertebra size trait (VT:0010518)	lumbar vertebra trabecular cross-sectional area (CMO:0001692)	18	1	34291613	Rat
61388	Bp2	Blood pressure QTL 2	3.23		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	1	35374722	Rat
9589153	Insul31	Insulin level QTL 31	7.15	0.05	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	18	1	42547119	Rat
2299160	Iddm35	Insulin dependent diabetes mellitus QTL 35	2.79		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	18	4207941	60377792	Rat
2312568	Glom21	Glomerulus QTL 21	2	0.005	kidney glomerulus morphology trait (VT:0005325)	index of glomerular damage (CMO:0001135)	18	5185858	40503530	Rat
2293708	Bss46	Bone structure and strength QTL 46	8.8	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	18	11791518	63636873	Rat
1578661	Bss20	Bone structure and strength QTL 20	3.7		femur morphology trait (VT:0000559)	femoral neck cross-sectional area (CMO:0001697)	18	11791518	83218561	Rat
1578667	Bss21	Bone structure and strength QTL 21	3.5		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	18	11791518	83218561	Rat
61382	Bp46	Blood pressure QTL 46	18.8		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11941791	31393320	Rat
631264	Scl22	Serum cholesterol level QTL 22	6.2		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	18	11941791	31393320	Rat
1331766	Bp236	Blood pressure QTL 236	3.022		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	11944299	31359530	Rat
61375	Bp41	Blood pressure QTL 41	2.4		blood pressure trait (VT:0000183)	systolic blood pressure (CMO:0000004)	18	11944299	41122201	Rat
1331753	Bp231	Blood pressure QTL 231	3.643		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944299	52293055	Rat
1358358	Sradr6	Stress Responsive Adrenal Weight QTL 6	2.49		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	18	11944299	59330563	Rat
6903359	Bp355	Blood pressure QTL 355	3.6		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	18	11944544	59796478	Rat
2313082	Bss85	Bone structure and strength QTL 85	0.8	0.0001	long bone metaphysis morphology trait (VT:0000133)	tibia midshaft total cross-sectional area (CMO:0001715)	18	14951337	59951337	Rat
1358193	Emca2	Estrogen-induced mammary cancer QTL 2	1.6		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	18	18007599	63571040	Rat
1331735	Rf44	Renal function QTL 44	2.981		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	18	18234564	31359530	Rat
1331775	Bp235	Blood pressure QTL 235	3.201		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	18234564	31359530	Rat
1600373	Mamtr6	Mammary tumor resistance QTL 6			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	18	19278901	83218561	Rat
1331741	Bp232	Blood pressure QTL 232	3.59112		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	18	21372893	83213037	Rat
1641923	Colcr8	Colorectal carcinoma resistance QTL 8	3.1	0.0014	intestine integrity trait (VT:0010554)	poorly differentiated malignant colorectal tumor number (CMO:0002076)	18	22066242	52293055	Rat
1331733	Bp233	Blood pressure QTL 233	3.97196		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	24796977	79788953	Rat
2325839	Bp348	Blood pressure QTL 348		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	25570985	70570985	Rat
12904673	Cm127	Cardiac mass QTL 127		0.005	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	18	26548082	46969551	Rat
12904675	Am19	Aortic mass QTL 19		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	18	26548082	46969551	Rat
12904677	Kidm72	Kidney mass QTL 72		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	18	26548082	46969551	Rat
12904668	Bw188	Body weight QTL 188		0.03	body mass (VT:0001259)	body weight (CMO:0000012)	18	26548082	46969551	Rat
12904669	Cm125	Cardiac mass QTL 125		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	18	26548082	46969551	Rat
12904670	Cm126	Cardiac mass QTL 126		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	18	26548082	46969551	Rat
2301413	Bp318	Blood pressure QTL 318		0.002	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	26548082	46969551	Rat
2293704	Bss35	Bone structure and strength QTL 35	4.59	0.0002	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	18	28964853	73964853	Rat
2300157	Bmd66	Bone mineral density QTL 66	13.1	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
2300177	Bmd65	Bone mineral density QTL 65	19.7	0.0001	femur mineral mass (VT:0010011)	volumetric bone mineral density (CMO:0001553)	18	28964853	73964853	Rat
9589816	Gluco68	Glucose level QTL 68	7.25	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	18	29792965	74792965	Rat
8694378	Bw157	Body weight QTL 157	3.59	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	18	29792965	74792965	Rat
9590318	Scort22	Serum corticosterone level QTL 22	7.64	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	18	29792965	74792965	Rat
1331754	Bp230	Blood pressure QTL 230	4.61609		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	18	29792965	74792965	Rat
738005	Anxrr11	Anxiety related response QTL 11	3.4		exploratory behavior trait (VT:0010471)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	18	30039813	75039813	Rat

Markers in Region

RH127602

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	30,155,235 - 30,155,439 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	31,468,191 - 31,468,394	NCBI	Rnor6.0
Rnor_5.0	18	31,146,783 - 31,146,986	UniSTS	Rnor5.0
Celera	18	29,795,968 - 29,796,171	UniSTS
RH 3.4 Map	18	437.9	UniSTS
Cytogenetic Map	18	p11	UniSTS

RH129865

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	41,526,193 - 41,526,401 (-)	MAPPER	mRatBN7.2
mRatBN7.2	18	30,155,317 - 30,155,534 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	31,468,273 - 31,468,489	NCBI	Rnor6.0
Rnor_6.0	3	41,526,254 - 41,526,461	NCBI	Rnor6.0
Rnor_5.0	3	46,603,180 - 46,603,387	UniSTS	Rnor5.0
Rnor_5.0	18	31,146,865 - 31,147,081	UniSTS	Rnor5.0
RGSC_v3.4	3	38,693,669 - 38,693,876	UniSTS	RGSC3.4
Celera	3	39,624,389 - 39,624,596	UniSTS
Celera	18	29,796,050 - 29,796,266	UniSTS
Cytogenetic Map	18	p11	UniSTS

BF416696

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	18	30,151,876 - 30,151,990 (+)	MAPPER	mRatBN7.2
Rnor_6.0	18	31,464,832 - 31,464,945	NCBI	Rnor6.0
Rnor_5.0	18	31,143,424 - 31,143,537	UniSTS	Rnor5.0
Celera	18	29,792,609 - 29,792,722	UniSTS
RH 3.4 Map	18	437.9	UniSTS
Cytogenetic Map	18	p11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	43	57	41	19	41	8	11	74	35	41	11	8
Low
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254636	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254637	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006254641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017601030	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097074	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097075	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097076	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039097079	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC103648	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC166497	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473974	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212790	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ213465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JACYVU010000299	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000075159 ⟹ ENSRNOP00000064970

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,132,669 - 30,155,685 (+)	Ensembl
Rnor_6.0 Ensembl	18	31,444,472 - 31,468,640 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000098653 ⟹ ENSRNOP00000082094

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,131,691 - 30,154,978 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000108268 ⟹ ENSRNOP00000089059

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,131,693 - 30,155,598 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115252 ⟹ ENSRNOP00000084800

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	18	30,131,713 - 30,155,429 (+)	Ensembl

RefSeq Acc Id:

NM_001034995 ⟹ NP_001030167

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,132,669 - 30,155,686 (+)	NCBI
Rnor_6.0	18	31,444,472 - 31,468,641 (+)	NCBI
Rnor_5.0	18	31,123,460 - 31,147,233 (+)	NCBI
Celera	18	29,773,473 - 29,796,418 (+)	RGD

Sequence:

show sequence

GAGGAAGTGCAAGGTTCGTTTTAAAAGAAGACAGTATCTGTTGGGGAACAACCGTGTGGAGATG
GCAGAATTTCTGTAGTATATTGGATGCAAATCCCACATCTTGGTTTCTTATCCAGCTTCAGTCT
AGCTTCACTGGCTAGAAAATAAATGGGATTTGCACAAATTCCAAGCCACAGTGAAATAACGCTT
GCAGCATTGATATCCTTTTCTCCTCGTTGTTACTAACAGAAAATTCAATGTCGGCAGAAGACCT
GGAAGCCCAGGAGGATGAACTACTGGCCCTGGCAAGTATTTATGATGGAGATGAGTTTAGAAAA
GCAGAGTCTGTCCAAGGAGGGGAAACCAGGATCTATTTGGATCTGCCACAGAATTTCAAGATAT
TCGTGAGCGGCAATTCAAATGAGTGTCTCCAGAATAGTGGCTTTGAATACACCATTTGCTTTCT
GCCACCACTTGTGCTGAACTTTGAACTGCCACCAGATTATCCATCCTCCTCCCCACCTTCATTC
ACACTTAGTGGCAAATGGCTGTCACCAACTCAGCTCTCTGCTCTCTGCAAGCACCTGGACAACC
TGTGGGAAGAACACCGAGGCCGTGTGGTGCTGTTTGCCTGGATGCAGTTTCTTAAGGAGGAGAC
CCTTACCTACCTGAATATTGTCTCTCCTTTTGAGCTCAAGATGGGGTCTCAGAAAAAGGTTCAG
AGAAGGACAACAGCTCAGGCCTCTTCCAACACAGAGCTTGCTTTGGGAGGAGCTGCTGCTGCTG
CTGCTGCGTCAGATGTAGACCAAGAAGACAGTGTGGATGAGAGAGCTGTACAGGATGTAGAATC
ATTGTCAAGTCTGATCCAGGAAATCTTGGACTTCAATCAAGATCGACAGATGAAGTGCTTCAAT
AGTAAACTGTTCTTGTGCAGTATCTGTTTCTGTGAGAAGCTGGGGAGTGATTGTATGTACTTCT
TGGAGTGCAGACATGTATATTGCAAAGCCTGTCTGAAGGATTACTTTGAAATCCAGATCAAAGA
TGGTCAAGTTAAATGCCTCAACTGTCCAGAACCACAGTGTTCTTCGGTGGCTACTCCTGGTCAG
GTCAAAGAGCTGGTAGAAGCAGACTTATTTGCTCGCTATGACCGCCTCCTCCTCCAGTCTACTT
TGGATCTAATGGCAGATGTGGTGTATTGTCCCCGTCCATGCTGCCAGCTCCCTGTGATGCAAGA
GCCTGGTGGCACCATGGCTATCTGCTCCAGCTGCAATTTTGCCTTCTGCACCTTATGCAGACTG
ACCTATCACGGGGTTTCTCCATGTAAGGTAACGGCAGAGAAATTAATAGACTTACGGAATGAAT
ACCTACAAGCAGATGAAGCTACTAAAAGGTTCTTGGAACAGAGGTATGGCAAGAGGGTGATTCA
GAAGGCCCTGGAGGAGATGGAGAGTAAAGACTGGCTGGAGAAGAACTCCAAGAGCTGCCCCTGC
TGTGGAACGCCCATACAGAAATTAGACGGCTGCAACAAGATGACCTGTACTGGCTGTATGCAGT
ATTTCTGCTGGGTTTGCATGGGCTCTCTCTCAAGAGCAAACCCTTACAAACATTTCACTGATCC
TGATTCTCCATGCTTTAACAGGTTGTTCCATGCCGTGGATGTCAATGGAGACATTTGGGAAGAT
GAGATTGAGGACTAGTTCATTCCTGCTCGCAATGTAGAAATGGAATGGTTTGCCCTGACCTTCT
GTCAAGTACACAAAGAGCCCTCGCAGGATATTTAGGGTACCATCTATTCACTCTTCAGTGTAGA
AGGAAGAACAGGGTTTATATTTTCCTTTGGTTCTACTGATTAAGGCACGTACATTTCCATGTAA
CATAATCTGATAAAATTATATGCCAAAGGATCAGAAATGAAAACTATAGATTAAATATTATAAT
ATGCCCAAACTGTGAATAGTTAAAAAGTAAATATTTATTTTCTCCCCCAAGCTTTAGGTTAGGG
AGAGGGTCAAGAGTTAAGCTTTTAGACCATGTCCAAGAAGCCCCTGCAGCTGGGGACAGTCACA
GCCCCAGCCACACTGTCCTGGGAGCCTGATCCATTCTCTGTACACTGCTCATTTCCATTCGTGC
TTTGGAGAGAGCCTCTGCTCTGTAACTGACCAAATGTCCAGTGTTGTTCTGTTGTACTGCTTGC
CAGAATAGAAATCTATAATAAATTAAAAAATATTTTTAGTATTATAATCCCTGTGGGTCACTTG
ATATTTATGAATAGTGTATTGAATCCCCTGGTTTAGAGCCAAATGTAGAATTTAGGATTCTGGC
TCAGAATTCCTCTAGATTCAGAGTCAGAGCTGTCTGTGCTCCCTTTTGTTCTCAGCTTTCTCCC
TTTGCCTCCCACCTTCTGTTGGCAAGTACAGTTTTAATGTTGATTACAGCAGTGTGTGTCTTTA
TTTCCTCTGCTAGAATAGAAAAGAGCCCAATATATTCCTCATGAATGCTCTCTGAACCTGTGAA
CAGCATCATGGTTCTACCCCACCTTCTGAACACTCGGGAATTGGGCTTCCTCCCCTCCCCTCCC
CTCGTAGACAGCAGTGTTTGGAGTGATAATAGTAGCTTGATAGCTAGATTCCTAACCCTGGCTT
TTATTGGCTTTTTGAAAAACTGTCTTCCTCCTGATTCCCTAAGTGGCTTGGTGTAGTCACTTGG
TGGATGTTTTGGAAAGGACAGTAACTCACCTGTAGCTTGTGAACTTGTGTTTTCTACTGTGACA
TTGAAAATTAAGGATTGCTTAACTGTCAGCTCAAACTGTTGCTGGATTGTCAATGAGGATGCTT
AATCTTAACAATAAAGTAATTTAAAATCATCCCGTAATTGGAGTAGGCATGGTGTCTGTTGCTT
CTGTCACCAAAGCACTGACTGAATTAAAACTGACTGTGTTTCTGTTTGTTCTGTTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006254636 ⟹ XP_006254698

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,131,627 - 30,155,613 (+)	NCBI
Rnor_6.0	18	31,443,425 - 31,468,627 (+)	NCBI
Rnor_5.0	18	31,123,460 - 31,147,233 (+)	NCBI

Sequence:

show sequence

TACCCCGGCATCCGCCCCTCTCAGCTGACAGCTCTGGAGACGGAAGAGGCGGTTCTCAGGTGGT
GCCCGGTGACTGCAGGCCTGGCTGGCTAGCGTGTTGCGAGGGCCCCAGTCAAGGGCATACTGCG
GAACTTTCGGGCCCGGCTCAGCTAAGCGGCCGGAAGATGGCAGAATTTCTGTAGTATATTGGAT
GCAAATCCCACATCTTGGTTTCTTATCCAGCTTCAGTCTAGCTTCACTGGCTAGAAAATAAATG
GGATTTGCACAAATTCCAAGCCACAGTGAAATAACGCTTGCAGCATTGATATCCTTTTCTCCTC
GTTGTTACTAACAGAAAATTCAATGTCGGCAGAAGACCTGGAAGCCCAGGAGGATGAACTACTG
GCCCTGGCAAGTATTTATGATGGAGATGAGTTTAGAAAAGCAGAGTCTGTCCAAGGAGGGGAAA
CCAGGATCTATTTGGATCTGCCACAGAATTTCAAGATATTCGTGAGCGGCAATTCAAATGAGTG
TCTCCAGAATAGTGGCTTTGAATACACCATTTGCTTTCTGCCACCACTTGTGCTGAACTTTGAA
CTGCCACCAGATTATCCATCCTCCTCCCCACCTTCATTCACACTTAGTGGCAAATGGCTGTCAC
CAACTCAGCTCTCTGCTCTCTGCAAGCACCTGGACAACCTGTGGGAAGAACACCGAGGCCGTGT
GGTGCTGTTTGCCTGGATGCAGTTTCTTAAGGAGGAGACCCTTACCTACCTGAATATTGTCTCT
CCTTTTGAGCTCAAGATGGGGTCTCAGAAAAAGGTTCAGAGAAGGACAACAGCTCAGGCCTCTT
CCAACACAGAGCTTGCTTTGGGAGGAGCTGCTGCTGCTGCTGCTGCGTCAGATGTAGACCAAGA
AGACAGTGTGGATGAGAGAGCTGTACAGGATGTAGAATCATTGTCAAGTCTGATCCAGGAAATC
TTGGACTTCAATCAAGATCGACAGATGAAGTGCTTCAATAGTAAACTGTTCTTGTGCAGTATCT
GTTTCTGTGAGAAGCTGGGGAGTGATTGTATGTACTTCTTGGAGTGCAGACATGTATATTGCAA
AGCCTGTCTGAAGGATTACTTTGAAATCCAGATCAAAGATGGTCAAGTTAAATGCCTCAACTGT
CCAGAACCACAGTGTTCTTCGGTGGCTACTCCTGGTCAGGTCAAAGAGCTGGTAGAAGCAGACT
TATTTGCTCGCTATGACCGCCTCCTCCTCCAGTCTACTTTGGATCTAATGGCAGATGTGGTGTA
TTGTCCCCGTCCATGCTGCCAGCTCCCTGTGATGCAAGAGCCTGGTGGCACCATGGCTATCTGC
TCCAGCTGCAATTTTGCCTTCTGCACCTTATGCAGACTGACCTATCACGGGGTTTCTCCATGTA
AGGTAACGGCAGAGAAATTAATAGACTTACGGAATGAATACCTACAAGCAGATGAAGCTACTAA
AAGGTTCTTGGAACAGAGGTATGGCAAGAGGGTGATTCAGAAGGCCCTGGAGGAGATGGAGAGT
AAAGACTGGCTGGAGAAGAACTCCAAGAGCTGCCCCTGCTGTGGAACGCCCATACAGAAATTAG
ACGGCTGCAACAAGATGACCTGTACTGGCTGTATGCAGTATTTCTGCTGGGTTTGCATGGGCTC
TCTCTCAAGAGCAAACCCTTACAAACATTTCACTGATCCTGATTCTCCATGCTTTAACAGGTTG
TTCCATGCCGTGGATGTCAATGGAGACATTTGGGAAGATGAGATTGAGGACTAGTTCATTCCTG
CTCGCAATGTAGAAATGGAATGGTTTGCCCTGACCTTCTGTCAAGTACACAAAGAGCCCTCGCA
GGATATTTAGGGTACCATCTATTCACTCTTCAGTGTAGAAGGAAGAACAGGGTTTATATTTTCC
TTTGGTTCTACTGATTAAGGCACGTACATTTCCATGTAACATAATCTGATAAAATTATATGCCA
AAGGATCAGAAATGAAAACTATAGATTAAATATTATAATATGCCCAAACTGTGAATAGTTAAAA
AGTAAATATTTATTTTCTCCCCCAAGCTTTAGGTTAGGGAGAGGGTCAAGAGTTAAGCTTTTAG
ACCATGTCCAAGAAGCCCCTGCAGCTGGGGACAGTCACAGCCCCAGCCACACTGTCCTGGGAGC
CTGATCCATTCTCTGTACACTGCTCATTTCCATTCGTGCTTTGGAGAGAGCCTCTGCTCTGTAA
CTGACCAAATGTCCAGTGTTGTTCTGTTGTACTGCTTGCCAGAATAGAAATCTATAATAAATTA
AAAAATATTTTTAGTATTATAATCCCTGTGGGTCACTTGATATTTATGAATAGTGTATTGAATC
CCCTGGTTTAGAGCCAAATGTAGAATTTAGGATTCTGGCTCAGAATTCCTCTAGATTCAGAGTC
AGAGCTGTCTGTGCTCCCTTTTGTTCTCAGCTTTCTCCCTTTGCCTCCCACCTTCTGTTGGCAA
GTACAGTTTTAATGTTGATTACAGCAGTGTGTGTCTTTATTTCCTCTGCTAGAATAGAAAAGAG
CCCAATATATTCCTCATGAATGCTCTCTGAACCTGTGAACAGCATCATGGTTCTACCCCACCTT
CTGAACACTCGGGAATTGGGCTTCCTCCCCTCCCCTCCCCTCGTAGACAGCAGTGTTTGGAGTG
ATAATAGTAGCTTGATAGCTAGATTCCTAACCCTGGCTTTTATTGGCTTTTTGAAAAACTGTCT
TCCTCCTGATTCCCTAAGTGGCTTGGTGTAGTCACTTGGTGGATGTTTTGGAAAGGACAGTAAC
TCACCTGTAGCTTGTGAACTTGTGTTTTCTACTGTGACATTGAAAATTAAGGATTGCTTAACTG
TCAGCTCAAACTGTTGCTGGATTGTCAATGAGGATGCTTAATCTTAACAATAAAGTAATTTAAA
ATCATCCCGTAATTGGAGTAGGCATGGTGTCTGTTGCTTCTGTCACCAAAGCACTGACTGAATT
AAAACTGACTGTGTTTC

hide sequence

RefSeq Acc Id:

XM_006254637 ⟹ XP_006254699

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,131,792 - 30,155,287 (+)	NCBI
Rnor_6.0	18	31,443,595 - 31,468,627 (+)	NCBI
Rnor_5.0	18	31,123,460 - 31,147,233 (+)	NCBI

Sequence:

show sequence

CGGGGAGGCGCTGTGAGCGCGCGAGGCCGAGCCGAGTGGCCGGGCCTGCTCTGTGGACACTCGG
CTCCCTGCCCGGGACAGAGCGGGGAGGCCGGCTCCGTGGGCCCTGAGGGTACAGGGCGGGGCGG
ATGGGCCCTGCGGCTGCCGCACGCCCGGGGAACAGTTCCTCTACGCCATTGCTAGCCCCGGGCC
TATAGCCCTGCCTGATCCTGTCGGGTGTTGCTTGGGAGTCGTACAAATACGTCTGCATGGCGAT
TGGCAGACTGCGGAGAGAGAGACCCAGGCTGACCCCAGCGCTGGAGCCTGCAGGGAGTGGCCGG
GAAGATGAATAGGATTTTCCCAAGCTAGGGAAAGCTGGCGGAGGAGGGGCTTCACGTCCTGCTG
GAGTGGCTTCCGGTTTGCAACAGTAGCATAATTAAATTTTGTCTGTTTGGTGCTGCCAGGGTTG
ACTATTGTTCCCGGTTTACAGATGGCAGAATTTCTGTAGTATATTGGATGCAAATCCCACATCT
TGGTTTCTTATCCAGCTTCAGTCTAGCTTCACTGGCTAGAAAATAAATGGGATTTGCACAAATT
CCAAGCCACAGTGAAATAACGCTTGCAGCATTGATATCCTTTTCTCCTCGTTGTTACTAACAGA
AAATTCAATGTCGGCAGAAGACCTGGAAGCCCAGGAGGATGAACTACTGGCCCTGGCAAGTATT
TATGATGGAGATGAGTTTAGAAAAGCAGAGTCTGTCCAAGGAGGGGAAACCAGGATCTATTTGG
ATCTGCCACAGAATTTCAAGATATTCGTGAGCGGCAATTCAAATGAGTGTCTCCAGAATAGTGG
CTTTGAATACACCATTTGCTTTCTGCCACCACTTGTGCTGAACTTTGAACTGCCACCAGATTAT
CCATCCTCCTCCCCACCTTCATTCACACTTAGTGGCAAATGGCTGTCACCAACTCAGCTCTCTG
CTCTCTGCAAGCACCTGGACAACCTGTGGGAAGAACACCGAGGCCGTGTGGTGCTGTTTGCCTG
GATGCAGTTTCTTAAGGAGGAGACCCTTACCTACCTGAATATTGTCTCTCCTTTTGAGCTCAAG
ATGGGGTCTCAGAAAAAGGTTCAGAGAAGGACAACAGCTCAGGCCTCTTCCAACACAGAGCTTG
CTTTGGGAGGAGCTGCTGCTGCTGCTGCTGCGTCAGATGTAGACCAAGAAGACAGTGTGGATGA
GAGAGCTGTACAGGATGTAGAATCATTGTCAAGTCTGATCCAGGAAATCTTGGACTTCAATCAA
GATCGACAGATGAAGTGCTTCAATAGTAAACTGTTCTTGTGCAGTATCTGTTTCTGTGAGAAGC
TGGGGAGTGATTGTATGTACTTCTTGGAGTGCAGACATGTATATTGCAAAGCCTGTCTGAAGGA
TTACTTTGAAATCCAGATCAAAGATGGTCAAGTTAAATGCCTCAACTGTCCAGAACCACAGTGT
TCTTCGGTGGCTACTCCTGGTCAGGTCAAAGAGCTGGTAGAAGCAGACTTATTTGCTCGCTATG
ACCGCCTCCTCCTCCAGTCTACTTTGGATCTAATGGCAGATGTGGTGTATTGTCCCCGTCCATG
CTGCCAGCTCCCTGTGATGCAAGAGCCTGGTGGCACCATGGCTATCTGCTCCAGCTGCAATTTT
GCCTTCTGCACCTTATGCAGACTGACCTATCACGGGGTTTCTCCATGTAAGGTAACGGCAGAGA
AATTAATAGACTTACGGAATGAATACCTACAAGCAGATGAAGCTACTAAAAGGTTCTTGGAACA
GAGGTATGGCAAGAGGGTGATTCAGAAGGCCCTGGAGGAGATGGAGAGTAAAGACTGGCTGGAG
AAGAACTCCAAGAGCTGCCCCTGCTGTGGAACGCCCATACAGAAATTAGACGGCTGCAACAAGA
TGACCTGTACTGGCTGTATGCAGTATTTCTGCTGGGTTTGCATGGGCTCTCTCTCAAGAGCAAA
CCCTTACAAACATTTCACTGATCCTGATTCTCCATGCTTTAACAGGTTGTTCCATGCCGTGGAT
GTCAATGGAGACATTTGGGAAGATGAGATTGAGGACTAGTTCATTCCTGCTCGCAATGTAGAAA
TGGAATGGTTTGCCCTGACCTTCTGTCAAGTACACAAAGAGCCCTCGCAGGATATTTAGGGTAC
CATCTATTCACTCTTCAGTGTAGAAGGAAGAACAGGGTTTATATTTTCCTTTGGTTCTACTGAT
TAAGGCACGTACATTTCCATGTAACATAATCTGATAAAATTATATGCCAAAGGATCAGAAATGA
AAACTATAGATTAAATATTATAATATGCCCAAACTGTGAATAGTTAAAAAGTAAATATTTATTT
TCTCCCCCAAGCTTTAGGTTAGGGAGAGGGTCAAGAGTTAAGCTTTTAGACCATGTCCAAGAAG
CCCCTGCAGCTGGGGACAGTCACAGCCCCAGCCACACTGTCCTGGGAGCCTGATCCATTCTCTG
TACACTGCTCATTTCCATTCGTGCTTTGGAGAGAGCCTCTGCTCTGTAACTGACCAAATGTCCA
GTGTTGTTCTGTTGTACTGCTTGCCAGAATAGAAATCTATAATAAATTAAAAAATATTTTTAGT
ATTATAATCCCTGTGGGTCACTTGATATTTATGAATAGTGTATTGAATCCCCTGGTTTAGAGCC
AAATGTAGAATTTAGGATTCTGGCTCAGAATTCCTCTAGATTCAGAGTCAGAGCTGTCTGTGCT
CCCTTTTGTTCTCAGCTTTCTCCCTTTGCCTCCCACCTTCTGTTGGCAAGTACAGTTTTAATGT
TGATTACAGCAGTGTGTGTCTTTATTTCCTCTGCTAGAATAGAAAAGAGCCCAATATATTCCTC
ATGAATGCTCTCTGAACCTGTGAACAGCATCATGGTTCTACCCCACCTTCTGAACACTCGGGAA
TTGGGCTTCCTCCCCTCCCCTCCCCTCGTAGACAGCAGTGTTTGGAGTGATAATAGTAGCTTGA
TAGCTAGATTCCTAACCCTGGCTTTTATTGGCTTTTTGAAAAACTGTCTTCCTCCTGATTCCCT
AAGTGGCTTGGTGTAGTCACTTGGTGGATGTTTTGGAAAGGACAGTAACTCACCTGTAGCTTGT
GAACTTGTGTTTTCTACTGTGACATTGAAAATTAAGGATTGCTTAACTGTCAGCTCAAACTGTT
GCTGGATTGTCAATGAGGATGCTTAATCTTAACAATAAAGTAATTTAAAATCATCCCGTAATTG
GAGTAGGCATGGTGTCTGTTGCTTCTGTCACCAAAGCACTGACTGAATTAAAACTGACTGTGTT
TC

hide sequence

RefSeq Acc Id:

XM_006254639 ⟹ XP_006254701

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,131,627 - 30,155,595 (+)	NCBI
Rnor_6.0	18	31,443,424 - 31,468,550 (+)	NCBI
Rnor_5.0	18	31,123,460 - 31,147,233 (+)	NCBI

Sequence:

show sequence

CTACCCCGGCATCCGCCCCTCTCAGCTGACAGCTCTGGAGACGGAAGAGGCGGTTCTCAGGTGG
TGCCCGGTGACTGCAGGCCTGGCTGGCTAGCGTGTTGCGAGGGCCCCAGTCAAGGGCATACTGC
GGAACTTTCGGGCCCGGCTCAGCTAAGCGGCCGGAAGATGGCAGAATTTCTGTAGTATATTGGA
TGCAAATCCCACATCTTGGTTTCTTATCCAGCTTCAGTCTAGCTTCACTGGCTAGAAAATAAAT
GGGATTTGCACAAATTCCAAGCCACAGTGAAATAACGCTTGCAGCATTGATATCCTTTTCTCCT
CGTTGTTACTAACAGAAAATTCAATGTCGGCAGAAGACCTGGAAGCCCAGGAGGATGAACTACT
GGCCCTGGCAAGTATTTATGATGGAGATGAGTTTAGAAAAGCAGAGTCTGTCCAAGGAGGGGAA
ACCAGGATCTATTTGGATCTGCCACAGAATTTCAAGATATTCGTGAGCGGCAATTCAAATGAGT
GTCTCCAGAATAGTGGCTTTGAATACACCATTTGCTTTCTGCCACCACTTGTGCTGAACTTTGA
ACTGCCACCAGATTATCCATCCTCCTCCCCACCTTCATTCACACTTAGTGGCAAATGGCTGTCA
CCAACTCAGCCCATTTACTATTCATATGAGCCTCACAAATTTCTGTTGGATAGATTTGTTATAG
GAAGTGCAGTTAATCCAAAAGAGGAACAGAAGGGTATGGGAGAAGAGAACACAGCTCTCTGCTC
TCTGCAAGCACCTGGACAACCTGTGGGAAGAACACCGAGGCCGTGTGGTGCTGTTTGCCTGGAT
GCAGTTTCTTAAGGAGGAGACCCTTACCTACCTGAATATTGTCTCTCCTTTTGAGCTCAAGATG
GGGTCTCAGAAAAAGGTTCAGAGAAGGACAACAGCTCAGGCCTCTTCCAACACAGAGCTTGCTT
TGGGAGGAGCTGCTGCTGCTGCTGCTGCGTCAGATGTAGACCAAGAAGACAGTGTGGATGAGAG
AGCTGTACAGGATGTAGAATCATTGTCAAGTCTGATCCAGGAAATCTTGGACTTCAATCAAGAT
CGACAGATGAAGTGCTTCAATAGTAAACTGTTCTTGTGCAGTATCTGTTTCTGTGAGAAGCTGG
GGAGTGATTGTATGTACTTCTTGGAGTGCAGACATGTATATTGCAAAGCCTGTCTGAAGGATTA
CTTTGAAATCCAGATCAAAGATGGTCAAGTTAAATGCCTCAACTGTCCAGAACCACAGTGTTCT
TCGGTGGCTACTCCTGGTCAGGTCAAAGAGCTGGTAGAAGCAGACTTATTTGCTCGCTATGACC
GCCTCCTCCTCCAGTCTACTTTGGATCTAATGGCAGATGTGGTGTATTGTCCCCGTCCATGCTG
CCAGCTCCCTGTGATGCAAGAGCCTGGTGGCACCATGGCTATCTGCTCCAGCTGCAATTTTGCC
TTCTGCACCTTATGCAGACTGACCTATCACGGGGTTTCTCCATGTAAGGTAACGGCAGAGAAAT
TAATAGACTTACGGAATGAATACCTACAAGCAGATGAAGCTACTAAAAGGTTCTTGGAACAGAG
GTATGGCAAGAGGGTGATTCAGAAGGCCCTGGAGGAGATGGAGAGTAAAGACTGGCTGGAGAAG
AACTCCAAGAGCTGCCCCTGCTGTGGAACGCCCATACAGAAATTAGACGGCTGCAACAAGATGA
CCTGTACTGGCTGTATGCAGTATTTCTGCTGGGTTTGCATGGGCTCTCTCTCAAGAGCAAACCC
TTACAAACATTTCACTGATCCTGATTCTCCATGCTTTAACAGGTTGTTCCATGCCGTGGATGTC
AATGGAGACATTTGGGAAGATGAGATTGAGGACTAGTTCATTCCTGCTCGCAATGTAGAAATGG
AATGGTTTGCCCTGACCTTCTGTCAAGTACACAAAGAGCCCTCGCAGGATATTTAGGGTACCAT
CTATTCACTCTTCAGTGTAGAAGGAAGAACAGGGTTTATATTTTCCTTTGGTTCTACTGATTAA
GGCACGTACATTTCCATGTAACATAATCTGATAAAATTATATGCCAAAGGATCAGAAATGAAAA
CTATAGATTAAATATTATAATATGCCCAAACTGTGAATAGTTAAAAAGTAAATATTTATTTTCT
CCCCCAAGCTTTAGGTTAGGGAGAGGGTCAAGAGTTAAGCTTTTAGACCATGTCCAAGAAGCCC
CTGCAGCTGGGGACAGTCACAGCCCCAGCCACACTGTCCTGGGAGCCTGATCCATTCTCTGTAC
ACTGCTCATTTCCATTCGTGCTTTGGAGAGAGCCTCTGCTCTGTAACTGACCAAATGTCCAGTG
TTGTTCTGTTGTACTGCTTGCCAGAATAGAAATCTATAATAAATTAAAAAATATTTTTAGTATT
ATAATCCCTGTGGGTCACTTGATATTTATGAATAGTGTATTGAATCCCCTGGTTTAGAGCCAAA
TGTAGAATTTAGGATTCTGGCTCAGAATTCCTCTAGATTCAGAGTCAGAGCTGTCTGTGCTCCC
TTTTGTTCTCAGCTTTCTCCCTTTGCCTCCCACCTTCTGTTGGCAAGTACAGTTTTAATGTTGA
TTACAGCAGTGTGTGTCTTTATTTCCTCTGCTAGAATAGAAAAGAGCCCAATATATTCCTCATG
AATGCTCTCTGAACCTGTGAACAGCATCATGGTTCTACCCCACCTTCTGAACACTCGGGAATTG
GGCTTCCTCCCCTCCCCTCCCCTCGTAGACAGCAGTGTTTGGAGTGATAATAGTAGCTTGATAG
CTAGATTCCTAACCCTGGCTTTTATTGGCTTTTTGAAAAACTGTCTTCCTCCTGATTCCCTAAG
TGGCTTGGTGTAGTCACTTGGTGGATGTTTTGGAAAGGACAGTAACTCACCTGTAGCTTGTGAA
CTTGTGTTTTCTACTGTGACATTGAAAATTAAGGATTGCTTAACTGTCAGCTCAAACTGTTGCT
GGATTGTCAATGAGGATGCTTAATCTTAACAATAAAGTAATTTAAAATCA

hide sequence

RefSeq Acc Id:

XM_006254640 ⟹ XP_006254702

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,131,627 - 30,155,287 (+)	NCBI
Rnor_6.0	18	31,443,424 - 31,468,627 (+)	NCBI
Rnor_5.0	18	31,123,460 - 31,147,233 (+)	NCBI

Sequence:

show sequence

CTACCCCGGCATCCGCCCCTCTCAGCTGACAGCTCTGGAGACGGAAGAGGCGGTTCTCAGGTGG
TGCCCGGTGACTGCAGGCCTGGCTGGCTAGCGTGTTGCGAGGGCCCCAGTCAAGGGCATACTGC
GGAACTTTCGGGCCCGGCTCAGCTAAGCGGCCGGAAGATGGCAGAATTTCTGTAGTATATTGGA
TGCAAATCCCACATCTTGGTTTCTTATCCAGCTTCAGTCTAGCTTCACTGGCTAGAAAATAAAT
GGGATTTGCACAAATTCCAAGCCACAGTGAAATAACGCTTGCAGCATTGATATCCTTTTCTCCT
CGTTGTTACTAACAGAAAATTCAATGTCGGCAGAAGACCTGGAAGCCCAGGAGGATGAACTACT
GGCCCTGGCAAGTATTTATGATGGAGATGAGTTTAGAAAAGCAGAGTCTGTCCAAGGAGGGGAA
ACCAGGATCTATTTGGATCTGCCACAGAATTTCAAGATATTCGTGAGCGCTCTCTGCTCTCTGC
AAGCACCTGGACAACCTGTGGGAAGAACACCGAGGCCGTGTGGTGCTGTTTGCCTGGATGCAGT
TTCTTAAGGAGGAGACCCTTACCTACCTGAATATTGTCTCTCCTTTTGAGCTCAAGATGGGGTC
TCAGAAAAAGGTTCAGAGAAGGACAACAGCTCAGGCCTCTTCCAACACAGAGCTTGCTTTGGGA
GGAGCTGCTGCTGCTGCTGCTGCGTCAGATGTAGACCAAGAAGACAGTGTGGATGAGAGAGCTG
TACAGGATGTAGAATCATTGTCAAGTCTGATCCAGGAAATCTTGGACTTCAATCAAGATCGACA
GATGAAGTGCTTCAATAGTAAACTGTTCTTGTGCAGTATCTGTTTCTGTGAGAAGCTGGGGAGT
GATTGTATGTACTTCTTGGAGTGCAGACATGTATATTGCAAAGCCTGTCTGAAGGATTACTTTG
AAATCCAGATCAAAGATGGTCAAGTTAAATGCCTCAACTGTCCAGAACCACAGTGTTCTTCGGT
GGCTACTCCTGGTCAGGTCAAAGAGCTGGTAGAAGCAGACTTATTTGCTCGCTATGACCGCCTC
CTCCTCCAGTCTACTTTGGATCTAATGGCAGATGTGGTGTATTGTCCCCGTCCATGCTGCCAGC
TCCCTGTGATGCAAGAGCCTGGTGGCACCATGGCTATCTGCTCCAGCTGCAATTTTGCCTTCTG
CACCTTATGCAGACTGACCTATCACGGGGTTTCTCCATGTAAGGTAACGGCAGAGAAATTAATA
GACTTACGGAATGAATACCTACAAGCAGATGAAGCTACTAAAAGGTTCTTGGAACAGAGGTATG
GCAAGAGGGTGATTCAGAAGGCCCTGGAGGAGATGGAGAGTAAAGACTGGCTGGAGAAGAACTC
CAAGAGCTGCCCCTGCTGTGGAACGCCCATACAGAAATTAGACGGCTGCAACAAGATGACCTGT
ACTGGCTGTATGCAGTATTTCTGCTGGGTTTGCATGGGCTCTCTCTCAAGAGCAAACCCTTACA
AACATTTCACTGATCCTGATTCTCCATGCTTTAACAGGTTGTTCCATGCCGTGGATGTCAATGG
AGACATTTGGGAAGATGAGATTGAGGACTAGTTCATTCCTGCTCGCAATGTAGAAATGGAATGG
TTTGCCCTGACCTTCTGTCAAGTACACAAAGAGCCCTCGCAGGATATTTAGGGTACCATCTATT
CACTCTTCAGTGTAGAAGGAAGAACAGGGTTTATATTTTCCTTTGGTTCTACTGATTAAGGCAC
GTACATTTCCATGTAACATAATCTGATAAAATTATATGCCAAAGGATCAGAAATGAAAACTATA
GATTAAATATTATAATATGCCCAAACTGTGAATAGTTAAAAAGTAAATATTTATTTTCTCCCCC
AAGCTTTAGGTTAGGGAGAGGGTCAAGAGTTAAGCTTTTAGACCATGTCCAAGAAGCCCCTGCA
GCTGGGGACAGTCACAGCCCCAGCCACACTGTCCTGGGAGCCTGATCCATTCTCTGTACACTGC
TCATTTCCATTCGTGCTTTGGAGAGAGCCTCTGCTCTGTAACTGACCAAATGTCCAGTGTTGTT
CTGTTGTACTGCTTGCCAGAATAGAAATCTATAATAAATTAAAAAATATTTTTAGTATTATAAT
CCCTGTGGGTCACTTGATATTTATGAATAGTGTATTGAATCCCCTGGTTTAGAGCCAAATGTAG
AATTTAGGATTCTGGCTCAGAATTCCTCTAGATTCAGAGTCAGAGCTGTCTGTGCTCCCTTTTG
TTCTCAGCTTTCTCCCTTTGCCTCCCACCTTCTGTTGGCAAGTACAGTTTTAATGTTGATTACA
GCAGTGTGTGTCTTTATTTCCTCTGCTAGAATAGAAAAGAGCCCAATATATTCCTCATGAATGC
TCTCTGAACCTGTGAACAGCATCATGGTTCTACCCCACCTTCTGAACACTCGGGAATTGGGCTT
CCTCCCCTCCCCTCCCCTCGTAGACAGCAGTGTTTGGAGTGATAATAGTAGCTTGATAGCTAGA
TTCCTAACCCTGGCTTTTATTGGCTTTTTGAAAAACTGTCTTCCTCCTGATTCCCTAAGTGGCT
TGGTGTAGTCACTTGGTGGATGTTTTGGAAAGGACAGTAACTCACCTGTAGCTTGTGAACTTGT
GTTTTCTACTGTGACATTGAAAATTAAGGATTGCTTAACTGTCAGCTCAAACTGTTGCTGGATT
GTCAATGAGGATGCTTAATCTTAACAATAAAGTAATTTAAAATCATCCCGTAATTGGAGTAGGC
ATGGTGTCTGTTGCTTCTGTCACCAAAGCACTGACTGAATTAAAACTGACTGTGTTTC

hide sequence

RefSeq Acc Id:

XM_017601030 ⟹ XP_017456519

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,131,792 - 30,155,287 (+)	NCBI
Rnor_6.0	18	31,443,595 - 31,468,627 (+)	NCBI

Sequence:

show sequence

CGGGGAGGCGCTGTGAGCGCGCGAGGCCGAGCCGAGTGGCCGGGCCTGCTCTGTGGACACTCGG
CTCCCTGCCCGGGACAGAGCGGGGAGGCCGGCTCCGTGGGCCCTGAGGGTACAGGGCGGGGCGG
ATGGGCCCTGCGGCTGCCGCACGCCCGGGGAACAGTTCCTCTACGCCATTGCTAGCCCCGGGCC
TATAGCCCTGCCTGATCCTGTCGGGTGTTGCTTGGGAGTCGTACAAATACGTCTGCATGGCGAT
TGGCAGACTGCGGAGAGAGAGACCCAGGCTGACCCCAGCGCTGGAGCCTGCAGGGAGTGGCCGG
GAAGATGAATAGGATTTTCCCAAGCTAGGGAAAGCTGGCGGAGGAGGGGCTTCACGTCCTGCTG
GAGTGGCTTCCGATGGCAGAATTTCTGTAGTATATTGGATGCAAATCCCACATCTTGGTTTCTT
ATCCAGCTTCAGTCTAGCTTCACTGGCTAGAAAATAAATGGGATTTGCACAAATTCCAAGCCAC
AGTGAAATAACGCTTGCAGCATTGATATCCTTTTCTCCTCGTTGTTACTAACAGAAAATTCAAT
GTCGGCAGAAGACCTGGAAGCCCAGGAGGATGAACTACTGGCCCTGGCAAGTATTTATGATGGA
GATGAGTTTAGAAAAGCAGAGTCTGTCCAAGGAGGGGAAACCAGGATCTATTTGGATCTGCCAC
AGAATTTCAAGATATTCGTGAGCGGCAATTCAAATGAGTGTCTCCAGAATAGTGGCTTTGAATA
CACCATTTGCTTTCTGCCACCACTTGTGCTGAACTTTGAACTGCCACCAGATTATCCATCCTCC
TCCCCACCTTCATTCACACTTAGTGGCAAATGGCTGTCACCAACTCAGCTCTCTGCTCTCTGCA
AGCACCTGGACAACCTGTGGGAAGAACACCGAGGCCGTGTGGTGCTGTTTGCCTGGATGCAGTT
TCTTAAGGAGGAGACCCTTACCTACCTGAATATTGTCTCTCCTTTTGAGCTCAAGATGGGGTCT
CAGAAAAAGGTTCAGAGAAGGACAACAGCTCAGGCCTCTTCCAACACAGAGCTTGCTTTGGGAG
GAGCTGCTGCTGCTGCTGCTGCGTCAGATGTAGACCAAGAAGACAGTGTGGATGAGAGAGCTGT
ACAGGATGTAGAATCATTGTCAAGTCTGATCCAGGAAATCTTGGACTTCAATCAAGATCGACAG
ATGAAGTGCTTCAATAGTAAACTGTTCTTGTGCAGTATCTGTTTCTGTGAGAAGCTGGGGAGTG
ATTGTATGTACTTCTTGGAGTGCAGACATGTATATTGCAAAGCCTGTCTGAAGGATTACTTTGA
AATCCAGATCAAAGATGGTCAAGTTAAATGCCTCAACTGTCCAGAACCACAGTGTTCTTCGGTG
GCTACTCCTGGTCAGGTCAAAGAGCTGGTAGAAGCAGACTTATTTGCTCGCTATGACCGCCTCC
TCCTCCAGTCTACTTTGGATCTAATGGCAGATGTGGTGTATTGTCCCCGTCCATGCTGCCAGCT
CCCTGTGATGCAAGAGCCTGGTGGCACCATGGCTATCTGCTCCAGCTGCAATTTTGCCTTCTGC
ACCTTATGCAGACTGACCTATCACGGGGTTTCTCCATGTAAGGTAACGGCAGAGAAATTAATAG
ACTTACGGAATGAATACCTACAAGCAGATGAAGCTACTAAAAGGTTCTTGGAACAGAGGTATGG
CAAGAGGGTGATTCAGAAGGCCCTGGAGGAGATGGAGAGTAAAGACTGGCTGGAGAAGAACTCC
AAGAGCTGCCCCTGCTGTGGAACGCCCATACAGAAATTAGACGGCTGCAACAAGATGACCTGTA
CTGGCTGTATGCAGTATTTCTGCTGGGTTTGCATGGGCTCTCTCTCAAGAGCAAACCCTTACAA
ACATTTCACTGATCCTGATTCTCCATGCTTTAACAGGTTGTTCCATGCCGTGGATGTCAATGGA
GACATTTGGGAAGATGAGATTGAGGACTAGTTCATTCCTGCTCGCAATGTAGAAATGGAATGGT
TTGCCCTGACCTTCTGTCAAGTACACAAAGAGCCCTCGCAGGATATTTAGGGTACCATCTATTC
ACTCTTCAGTGTAGAAGGAAGAACAGGGTTTATATTTTCCTTTGGTTCTACTGATTAAGGCACG
TACATTTCCATGTAACATAATCTGATAAAATTATATGCCAAAGGATCAGAAATGAAAACTATAG
ATTAAATATTATAATATGCCCAAACTGTGAATAGTTAAAAAGTAAATATTTATTTTCTCCCCCA
AGCTTTAGGTTAGGGAGAGGGTCAAGAGTTAAGCTTTTAGACCATGTCCAAGAAGCCCCTGCAG
CTGGGGACAGTCACAGCCCCAGCCACACTGTCCTGGGAGCCTGATCCATTCTCTGTACACTGCT
CATTTCCATTCGTGCTTTGGAGAGAGCCTCTGCTCTGTAACTGACCAAATGTCCAGTGTTGTTC
TGTTGTACTGCTTGCCAGAATAGAAATCTATAATAAATTAAAAAATATTTTTAGTATTATAATC
CCTGTGGGTCACTTGATATTTATGAATAGTGTATTGAATCCCCTGGTTTAGAGCCAAATGTAGA
ATTTAGGATTCTGGCTCAGAATTCCTCTAGATTCAGAGTCAGAGCTGTCTGTGCTCCCTTTTGT
TCTCAGCTTTCTCCCTTTGCCTCCCACCTTCTGTTGGCAAGTACAGTTTTAATGTTGATTACAG
CAGTGTGTGTCTTTATTTCCTCTGCTAGAATAGAAAAGAGCCCAATATATTCCTCATGAATGCT
CTCTGAACCTGTGAACAGCATCATGGTTCTACCCCACCTTCTGAACACTCGGGAATTGGGCTTC
CTCCCCTCCCCTCCCCTCGTAGACAGCAGTGTTTGGAGTGATAATAGTAGCTTGATAGCTAGAT
TCCTAACCCTGGCTTTTATTGGCTTTTTGAAAAACTGTCTTCCTCCTGATTCCCTAAGTGGCTT
GGTGTAGTCACTTGGTGGATGTTTTGGAAAGGACAGTAACTCACCTGTAGCTTGTGAACTTGTG
TTTTCTACTGTGACATTGAAAATTAAGGATTGCTTAACTGTCAGCTCAAACTGTTGCTGGATTG
TCAATGAGGATGCTTAATCTTAACAATAAAGTAATTTAAAATCATCCCGTAATTGGAGTAGGCA
TGGTGTCTGTTGCTTCTGTCACCAAAGCACTGACTGAATTAAAACTGACTGTGTTTC

hide sequence

RefSeq Acc Id:

XM_039097074 ⟹ XP_038953002

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,131,638 - 30,155,287 (+)	NCBI

RefSeq Acc Id:

XM_039097075 ⟹ XP_038953003

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,133,365 - 30,155,287 (+)	NCBI

RefSeq Acc Id:

XM_039097076 ⟹ XP_038953004

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,132,539 - 30,155,287 (+)	NCBI

RefSeq Acc Id:

XM_039097078 ⟹ XP_038953006

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,131,627 - 30,155,595 (+)	NCBI

RefSeq Acc Id:

XM_039097079 ⟹ XP_038953007

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2	18	30,131,627 - 30,148,735 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001030167	(Get FASTA)	NCBI Sequence Viewer
	XP_006254698	(Get FASTA)	NCBI Sequence Viewer
	XP_006254699	(Get FASTA)	NCBI Sequence Viewer
	XP_006254701	(Get FASTA)	NCBI Sequence Viewer
	XP_006254702	(Get FASTA)	NCBI Sequence Viewer
	XP_017456519	(Get FASTA)	NCBI Sequence Viewer
	XP_038953002	(Get FASTA)	NCBI Sequence Viewer
	XP_038953003	(Get FASTA)	NCBI Sequence Viewer
	XP_038953004	(Get FASTA)	NCBI Sequence Viewer
	XP_038953006	(Get FASTA)	NCBI Sequence Viewer
	XP_038953007	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI03649	(Get FASTA)	NCBI Sequence Viewer
	AAI66497	(Get FASTA)	NCBI Sequence Viewer
	EDL76439	(Get FASTA)	NCBI Sequence Viewer
	EDL76440	(Get FASTA)	NCBI Sequence Viewer
	EDL76443	(Get FASTA)	NCBI Sequence Viewer
	EDL76444	(Get FASTA)	NCBI Sequence Viewer
	EDL76445	(Get FASTA)	NCBI Sequence Viewer
	EDL76446	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001030167 ⟸ NM_001034995

- UniProtKB:

Q3ZAU6 (UniProtKB/TrEMBL), A6J3F9 (UniProtKB/TrEMBL), A0A8I5ZTV5 (UniProtKB/TrEMBL), A6J3G1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSAEDLEAQEDELLALASIYDGDEFRKAESVQGGETRIYLDLPQNFKIFVSGNSNECLQNSGFE
YTICFLPPLVLNFELPPDYPSSSPPSFTLSGKWLSPTQLSALCKHLDNLWEEHRGRVVLFAWMQ
FLKEETLTYLNIVSPFELKMGSQKKVQRRTTAQASSNTELALGGAAAAAAASDVDQEDSVDERA
VQDVESLSSLIQEILDFNQDRQMKCFNSKLFLCSICFCEKLGSDCMYFLECRHVYCKACLKDYF
EIQIKDGQVKCLNCPEPQCSSVATPGQVKELVEADLFARYDRLLLQSTLDLMADVVYCPRPCCQ
LPVMQEPGGTMAICSSCNFAFCTLCRLTYHGVSPCKVTAEKLIDLRNEYLQADEATKRFLEQRY
GKRVIQKALEEMESKDWLEKNSKSCPCCGTPIQKLDGCNKMTCTGCMQYFCWVCMGSLSRANPY
KHFTDPDSPCFNRLFHAVDVNGDIWEDEIED

hide sequence

RefSeq Acc Id:	XP_006254701 ⟸ XM_006254639
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7D2 (UniProtKB/TrEMBL), A6J3G3 (UniProtKB/TrEMBL), B2GV23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQFLKEETLTYLNIVSPFELKMGSQKKVQRRTTAQASSNTELALGGAAAAAAASDVDQEDSVDE RAVQDVESLSSLIQEILDFNQDRQMKCFNSKLFLCSICFCEKLGSDCMYFLECRHVYCKACLKD YFEIQIKDGQVKCLNCPEPQCSSVATPGQVKELVEADLFARYDRLLLQSTLDLMADVVYCPRPC CQLPVMQEPGGTMAICSSCNFAFCTLCRLTYHGVSPCKVTAEKLIDLRNEYLQADEATKRFLEQ RYGKRVIQKALEEMESKDWLEKNSKSCPCCGTPIQKLDGCNKMTCTGCMQYFCWVCMGSLSRAN PYKHFTDPDSPCFNRLFHAVDVNGDIWEDEIED hide sequence

RefSeq Acc Id:	XP_006254698 ⟸ XM_006254636
- Peptide Label:	isoform X1
- UniProtKB:	Q3ZAU6 (UniProtKB/TrEMBL), A6J3F9 (UniProtKB/TrEMBL), A0A8I5ZTV5 (UniProtKB/TrEMBL), A6J3G1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAEDLEAQEDELLALASIYDGDEFRKAESVQGGETRIYLDLPQNFKIFVSGNSNECLQNSGFE YTICFLPPLVLNFELPPDYPSSSPPSFTLSGKWLSPTQLSALCKHLDNLWEEHRGRVVLFAWMQ FLKEETLTYLNIVSPFELKMGSQKKVQRRTTAQASSNTELALGGAAAAAAASDVDQEDSVDERA VQDVESLSSLIQEILDFNQDRQMKCFNSKLFLCSICFCEKLGSDCMYFLECRHVYCKACLKDYF EIQIKDGQVKCLNCPEPQCSSVATPGQVKELVEADLFARYDRLLLQSTLDLMADVVYCPRPCCQ LPVMQEPGGTMAICSSCNFAFCTLCRLTYHGVSPCKVTAEKLIDLRNEYLQADEATKRFLEQRY GKRVIQKALEEMESKDWLEKNSKSCPCCGTPIQKLDGCNKMTCTGCMQYFCWVCMGSLSRANPY KHFTDPDSPCFNRLFHAVDVNGDIWEDEIED hide sequence

RefSeq Acc Id:	XP_006254702 ⟸ XM_006254640
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7D2 (UniProtKB/TrEMBL), A6J3G3 (UniProtKB/TrEMBL), B2GV23 (UniProtKB/TrEMBL)
- Sequence:	show sequence MQFLKEETLTYLNIVSPFELKMGSQKKVQRRTTAQASSNTELALGGAAAAAAASDVDQEDSVDE RAVQDVESLSSLIQEILDFNQDRQMKCFNSKLFLCSICFCEKLGSDCMYFLECRHVYCKACLKD YFEIQIKDGQVKCLNCPEPQCSSVATPGQVKELVEADLFARYDRLLLQSTLDLMADVVYCPRPC CQLPVMQEPGGTMAICSSCNFAFCTLCRLTYHGVSPCKVTAEKLIDLRNEYLQADEATKRFLEQ RYGKRVIQKALEEMESKDWLEKNSKSCPCCGTPIQKLDGCNKMTCTGCMQYFCWVCMGSLSRAN PYKHFTDPDSPCFNRLFHAVDVNGDIWEDEIED hide sequence

RefSeq Acc Id:	XP_006254699 ⟸ XM_006254637
- Peptide Label:	isoform X1
- UniProtKB:	Q3ZAU6 (UniProtKB/TrEMBL), A6J3F9 (UniProtKB/TrEMBL), A0A8I5ZTV5 (UniProtKB/TrEMBL), A6J3G1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAEDLEAQEDELLALASIYDGDEFRKAESVQGGETRIYLDLPQNFKIFVSGNSNECLQNSGFE YTICFLPPLVLNFELPPDYPSSSPPSFTLSGKWLSPTQLSALCKHLDNLWEEHRGRVVLFAWMQ FLKEETLTYLNIVSPFELKMGSQKKVQRRTTAQASSNTELALGGAAAAAAASDVDQEDSVDERA VQDVESLSSLIQEILDFNQDRQMKCFNSKLFLCSICFCEKLGSDCMYFLECRHVYCKACLKDYF EIQIKDGQVKCLNCPEPQCSSVATPGQVKELVEADLFARYDRLLLQSTLDLMADVVYCPRPCCQ LPVMQEPGGTMAICSSCNFAFCTLCRLTYHGVSPCKVTAEKLIDLRNEYLQADEATKRFLEQRY GKRVIQKALEEMESKDWLEKNSKSCPCCGTPIQKLDGCNKMTCTGCMQYFCWVCMGSLSRANPY KHFTDPDSPCFNRLFHAVDVNGDIWEDEIED hide sequence

RefSeq Acc Id:	XP_017456519 ⟸ XM_017601030
- Peptide Label:	isoform X1
- UniProtKB:	Q3ZAU6 (UniProtKB/TrEMBL), A6J3F9 (UniProtKB/TrEMBL), A0A8I5ZTV5 (UniProtKB/TrEMBL), A6J3G1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSAEDLEAQEDELLALASIYDGDEFRKAESVQGGETRIYLDLPQNFKIFVSGNSNECLQNSGFE YTICFLPPLVLNFELPPDYPSSSPPSFTLSGKWLSPTQLSALCKHLDNLWEEHRGRVVLFAWMQ FLKEETLTYLNIVSPFELKMGSQKKVQRRTTAQASSNTELALGGAAAAAAASDVDQEDSVDERA VQDVESLSSLIQEILDFNQDRQMKCFNSKLFLCSICFCEKLGSDCMYFLECRHVYCKACLKDYF EIQIKDGQVKCLNCPEPQCSSVATPGQVKELVEADLFARYDRLLLQSTLDLMADVVYCPRPCCQ LPVMQEPGGTMAICSSCNFAFCTLCRLTYHGVSPCKVTAEKLIDLRNEYLQADEATKRFLEQRY GKRVIQKALEEMESKDWLEKNSKSCPCCGTPIQKLDGCNKMTCTGCMQYFCWVCMGSLSRANPY KHFTDPDSPCFNRLFHAVDVNGDIWEDEIED hide sequence

RefSeq Acc Id:

ENSRNOP00000064970 ⟸ ENSRNOT00000075159

RefSeq Acc Id:	XP_038953006 ⟸ XM_039097078
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7D2 (UniProtKB/TrEMBL), A6J3G3 (UniProtKB/TrEMBL), B2GV23 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953007 ⟸ XM_039097079
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038953002 ⟸ XM_039097074
- Peptide Label:	isoform X1
- UniProtKB:	Q3ZAU6 (UniProtKB/TrEMBL), A6J3F9 (UniProtKB/TrEMBL), A0A8I5ZTV5 (UniProtKB/TrEMBL), A6J3G1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953004 ⟸ XM_039097076
- Peptide Label:	isoform X1
- UniProtKB:	Q3ZAU6 (UniProtKB/TrEMBL), A6J3F9 (UniProtKB/TrEMBL), A0A8I5ZTV5 (UniProtKB/TrEMBL), A6J3G1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038953003 ⟸ XM_039097075
- Peptide Label:	isoform X1
- UniProtKB:	Q3ZAU6 (UniProtKB/TrEMBL), A6J3F9 (UniProtKB/TrEMBL), A0A8I5ZTV5 (UniProtKB/TrEMBL), A6J3G1 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000084800 ⟸ ENSRNOT00000115252

RefSeq Acc Id:

ENSRNOP00000082094 ⟸ ENSRNOT00000098653

RefSeq Acc Id:

ENSRNOP00000089059 ⟸ ENSRNOT00000108268

Protein Domains

RING-type RWD

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q3ZAU6-F1-model_v2	AlphaFold	Q3ZAU6	1-479	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1589576	AgrOrtholog
BioCyc Gene	G2FUF-7777	BioCyc
Ensembl Genes	ENSRNOG00000045637	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Protein	ENSRNOP00000064970	ENTREZGENE
	ENSRNOP00000064970.1	UniProtKB/TrEMBL
	ENSRNOP00000082094	ENTREZGENE
	ENSRNOP00000082094.1	UniProtKB/TrEMBL
	ENSRNOP00000084800.1	UniProtKB/TrEMBL
	ENSRNOP00000089059	ENTREZGENE
	ENSRNOP00000089059.1	UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000075159	ENTREZGENE
	ENSRNOT00000075159.2	UniProtKB/TrEMBL
	ENSRNOT00000098653	ENTREZGENE
	ENSRNOT00000098653.1	UniProtKB/TrEMBL
	ENSRNOT00000108268	ENTREZGENE
	ENSRNOT00000108268.1	UniProtKB/TrEMBL
	ENSRNOT00000115252.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.120.1750	UniProtKB/TrEMBL
	2.20.25.20	UniProtKB/TrEMBL
	3.10.110.10	UniProtKB/TrEMBL
	3.30.40.10	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7112263	IMAGE-MGC_LOAD
	IMAGE:7315158	IMAGE-MGC_LOAD
InterPro	E3_UB_ligase_RBR	UniProtKB/TrEMBL
	Rcat_RBR_RNF14	UniProtKB/TrEMBL
	RNF14	UniProtKB/TrEMBL
	RWD-domain	UniProtKB/TrEMBL
	TRIAD_supradom	UniProtKB/TrEMBL
	UBQ-conjugating_enzyme/RWD	UniProtKB/TrEMBL
	Znf_C6HC	UniProtKB/TrEMBL
	Znf_RING	UniProtKB/TrEMBL
	Znf_RING/FYVE/PHD	UniProtKB/TrEMBL
	Znf_RING_CS	UniProtKB/TrEMBL
KEGG Report	rno:619577	UniProtKB/TrEMBL
MGC_CLONE	MGC:125150	IMAGE-MGC_LOAD
	MGC:188032	IMAGE-MGC_LOAD
NCBI Gene	619577	ENTREZGENE
PANTHER	E3 UBIQUITIN-PROTEIN LIGASE RNF14	UniProtKB/TrEMBL
	PTHR11685	UniProtKB/TrEMBL
Pfam	IBR	UniProtKB/TrEMBL
	RWD	UniProtKB/TrEMBL
PhenoGen	Rnf14	PhenoGen
PROSITE	RWD	UniProtKB/TrEMBL
	TRIAD	UniProtKB/TrEMBL
	ZF_RING_1	UniProtKB/TrEMBL
	ZF_RING_2	UniProtKB/TrEMBL
SMART	IBR	UniProtKB/TrEMBL
	RWD	UniProtKB/TrEMBL
Superfamily-SCOP	RING/U-box	UniProtKB/TrEMBL
	UBQ-conjugat/RWD-like	UniProtKB/TrEMBL
UniProt	A0A8I5ZTV5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A1Y2_RAT	UniProtKB/TrEMBL
	A0A8I6A7D2	ENTREZGENE, UniProtKB/TrEMBL
	A6J3F9	ENTREZGENE, UniProtKB/TrEMBL
	A6J3G1	ENTREZGENE, UniProtKB/TrEMBL
	A6J3G3	ENTREZGENE, UniProtKB/TrEMBL
	B2GV23	ENTREZGENE, UniProtKB/TrEMBL
	Q3ZAU6	ENTREZGENE
UniProt Secondary	Q3ZAU6	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-11-19	Rnf14	ring finger protein 14			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar