Tent5b-ps1 (terminal nucleotidyltransferase 5B, pseudogene 1) - Rat Genome Database

Send us a Message



Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Gene: Tent5b-ps1 (terminal nucleotidyltransferase 5B, pseudogene 1) Rattus norvegicus
Analyze
Symbol: Tent5b-ps1
Name: terminal nucleotidyltransferase 5B, pseudogene 1
RGD ID: 1589452
Description:
Type: pseudo
RefSeq Status: MODEL
Previously known as: LOC680624; similar to CG30497-PA; similar to CG30497-PA, isoform A
Related Functional Gene: Tent5b  
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81127,212,320 - 27,214,297 (+)NCBIGRCr8
mRatBN7.21113,725,106 - 13,728,086 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.01112,275,103 - 12,277,820 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01115,937,367 - 15,940,204 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41113,864,648 - 13,866,416 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1113,743,803 - 13,746,520 (+)NCBICelera
Cytogenetic Map11p11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Tent5b-ps1
21 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)11121836709Rat
1598842Glom10Glomerulus QTL 103.4kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)11135331169Rat
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)11169446234Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)11104193166113562Rat
1641927Alcrsp10Alcohol response QTL 10alcohol metabolism trait (VT:0015089)blood ethanol level (CMO:0000535)11843667453436674Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)111283104625121472Rat

Markers in Region
RH142757  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21113,727,189 - 13,727,311 (+)MAPPERmRatBN7.2
mRatBN7.25145,702,353 - 145,702,475 (+)MAPPERmRatBN7.2
Rnor_6.01112,277,694 - 12,277,815NCBIRnor6.0
Rnor_6.05151,699,067 - 151,699,188NCBIRnor6.0
Rnor_5.01115,939,402 - 15,939,523UniSTSRnor5.0
Rnor_5.05155,361,218 - 155,361,339UniSTSRnor5.0
RGSC_v3.45151,605,482 - 151,605,603UniSTSRGSC3.4
RGSC_v3.41113,866,378 - 13,866,499UniSTSRGSC3.4
Celera1113,746,394 - 13,746,515UniSTS
Celera5144,123,103 - 144,123,224UniSTS
RH 3.4 Map5988.7UniSTS
Cytogenetic Map5q36UniSTS
Cytogenetic Map11p11UniSTS


Expression


Sequence


RefSeq Acc Id: XM_008768543   ⟹   XP_008766765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01112,275,103 - 12,277,820 (+)NCBI
Sequence:
RefSeq Acc Id: XM_008776085   ⟹   XP_008774307
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Celera1113,743,803 - 13,746,520 (+)NCBI
Sequence:

Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-22238 BioCyc
NCBI Gene 680624 ENTREZGENE
PhenoGen Tent5b-ps1 PhenoGen


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Tent5b-ps1  terminal nucleotidyltransferase 5B, pseudogene 1  LOC680624  similar to CG30497-PA, isoform A  Symbol and Name Changed 1299863 APPROVED
2006-11-19 LOC680624  similar to CG30497-PA, isoform A      Symbol and Name status set to provisional 70820 PROVISIONAL